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Mutant Information

Mutant Name	FN2933-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2933-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3173454	C-G	HET	INTERGENIC
SBS	Chr1	3932511	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g08130
SBS	Chr1	34579994	C-T	HOMO	INTERGENIC
SBS	Chr2	18419100	C-T	HOMO	INTRON
SBS	Chr2	27001031	T-C	HOMO	INTERGENIC
SBS	Chr3	2606088	C-T	HOMO	INTERGENIC
SBS	Chr3	13862272	C-T	HET	INTERGENIC
SBS	Chr3	18093366	T-C	HOMO	INTRON
SBS	Chr3	18093367	G-A	HOMO	INTRON
SBS	Chr3	33054857	G-A	HET	INTRON
SBS	Chr4	20379598	G-T	HOMO	INTERGENIC
SBS	Chr4	20379599	T-G	HOMO	INTERGENIC
SBS	Chr4	29288240	A-T	HET	INTERGENIC
SBS	Chr4	30148884	T-A	HET	INTERGENIC
SBS	Chr5	639011	T-C	HET	INTERGENIC
SBS	Chr6	11796000	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	15640401	C-T	HET	INTERGENIC
SBS	Chr6	27228525	T-G	HET	SYNONYMOUS_CODING
SBS	Chr7	6543809	A-G	HOMO	INTERGENIC
SBS	Chr7	13665813	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	28131636	C-T	HOMO	INTERGENIC
SBS	Chr8	2133802	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	12787988	G-A	HET	INTERGENIC
SBS	Chr10	4216222	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g07574
SBS	Chr11	11112086	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g19340
SBS	Chr11	11112087	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g19340
SBS	Chr11	15180057	G-A	HOMO	INTERGENIC
SBS	Chr12	1249286	G-A	HET	INTERGENIC
SBS	Chr12	1556462	C-T	HET	UTR_5_PRIME

Deletions: 48

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	449284	449285	1
Deletion	Chr2	1502631	1502632	1	LOC_Os02g03630
Deletion	Chr4	1730678	1730679	1
Deletion	Chr3	2239385	2239388	3
Deletion	Chr4	2797684	2797685	1
Deletion	Chr7	2925306	2925339	33
Deletion	Chr8	3108923	3108927	4	LOC_Os08g05800
Deletion	Chr8	3463799	3463804	5
Deletion	Chr1	3902521	3902526	5
Deletion	Chr4	7294736	7294738	2
Deletion	Chr7	8441494	8441496	2
Deletion	Chr9	9607572	9607583	11
Deletion	Chr10	9640125	9640126	1
Deletion	Chr9	10257668	10257669	1
Deletion	Chr11	10882002	10882005	3
Deletion	Chr11	10995148	10995150	2	LOC_Os11g19230
Deletion	Chr7	11067876	11067893	17
Deletion	Chr12	13724499	13724502	3	LOC_Os12g24120
Deletion	Chr2	14106632	14106638	6
Deletion	Chr4	14143249	14143291	42	LOC_Os04g24630
Deletion	Chr9	14318358	14318361	3
Deletion	Chr7	15395175	15395254	79
Deletion	Chr2	15658317	15658318	1
Deletion	Chr3	16624429	16624430	1
Deletion	Chr1	16643047	16643055	8
Deletion	Chr12	17016686	17016687	1
Deletion	Chr12	18132684	18132685	1	LOC_Os12g30214
Deletion	Chr4	18154102	18154123	21
Deletion	Chr7	19131948	19132012	64
Deletion	Chr6	19850144	19850160	16
Deletion	Chr4	20800023	20800024	1
Deletion	Chr6	21926778	21926779	1
Deletion	Chr12	22840796	22840812	16
Deletion	Chr8	23101429	23101430	1
Deletion	Chr3	23393302	23393303	1
Deletion	Chr3	24364525	24364529	4
Deletion	Chr11	24574566	24574567	1
Deletion	Chr2	24778976	24778983	7
Deletion	Chr2	25582495	25582496	1
Deletion	Chr3	26111523	26111524	1
Deletion	Chr1	26144378	26144381	3	LOC_Os01g46000
Deletion	Chr12	26396019	26396020	1
Deletion	Chr7	27373654	27373655	1
Deletion	Chr5	27654902	27654903	1
Deletion	Chr4	28636298	28636299	1
Deletion	Chr4	29698542	29698543	1
Deletion	Chr4	32264807	32264822	15	LOC_Os04g54160
Deletion	Chr1	42849270	42849271	1

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	15906826	15906827	2
Insertion	Chr1	26935317	26935317	1
Insertion	Chr1	29173556	29173556	1
Insertion	Chr2	18232028	18232097	70
Insertion	Chr3	26761919	26761980	62
Insertion	Chr3	34562750	34562842	93
Insertion	Chr4	480831	480831	1
Insertion	Chr4	7994877	7994877	1
Insertion	Chr4	13737263	13737263	1
Insertion	Chr5	8681381	8681384	4
Insertion	Chr7	2834866	2834866	1
Insertion	Chr7	7458951	7458951	1
Insertion	Chr7	20854229	20854229	1
Insertion	Chr7	22435148	22435188	41
Insertion	Chr8	3462895	3462895	1	LOC_Os08g06280
Insertion	Chr8	12653086	12653086	1
Insertion	Chr8	17016910	17016910	1
Insertion	Chr8	17515866	17515869	4
Insertion	Chr11	21125946	21125949	4
Insertion	Chr12	16443436	16443436	1

No Inversion

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3680139	Chr8	1215877
Translocation	Chr5	7498285	Chr2	19413192	2
Translocation	Chr5	7498286	Chr2	19411398	2
Translocation	Chr7	7985056	Chr5	20661013
Translocation	Chr10	8111377	Chr9	19170310
Translocation	Chr11	14496679	Chr4	3485500
Translocation	Chr10	18918265	Chr4	26474456	LOC_Os10g35390
Translocation	Chr10	18918653	Chr4	26474458
Translocation	Chr11	27757074	Chr4	3131190

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