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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38240658	G-A	HET	INTERGENIC
SBS	Chr1	7643828	C-T	HOMO	INTERGENIC
SBS	Chr10	14813865	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28470
SBS	Chr10	8077406	T-C	HOMO	INTERGENIC
SBS	Chr11	13151091	G-A	HET	INTERGENIC
SBS	Chr11	13788711	C-T	HET	INTERGENIC
SBS	Chr11	1398818	C-A	HET	INTERGENIC
SBS	Chr11	1398820	A-G	HET	INTERGENIC
SBS	Chr11	16460690	C-T	HET	INTERGENIC
SBS	Chr11	18758580	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	21319112	G-A	HET	INTERGENIC
SBS	Chr11	2845143	C-T	HET	INTRON
SBS	Chr11	28863007	A-C	HOMO	INTERGENIC
SBS	Chr11	595832	C-T	HET	INTRON
SBS	Chr12	1720970	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	444693	C-T	HET	INTERGENIC
SBS	Chr2	25530092	G-A	HOMO	INTERGENIC
SBS	Chr4	10967395	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g19660
SBS	Chr4	3233692	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g06230
SBS	Chr5	27200736	T-C	HET	INTERGENIC
SBS	Chr5	27910755	G-A	HET	UTR_3_PRIME
SBS	Chr6	19566317	T-C	HOMO	INTRON
SBS	Chr7	20247520	C-T	HET	INTERGENIC
SBS	Chr7	7721995	G-A	HOMO	STOP_GAINED	LOC_Os07g13460
SBS	Chr8	23507651	G-A	HET	INTERGENIC
SBS	Chr8	6387389	C-T	HET	INTERGENIC
SBS	Chr9	17299227	T-C	HET	INTRON
SBS	Chr9	4818945	A-T	HOMO	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr6	565232	565234	2
Deletion	Chr9	1935499	1935509	10
Deletion	Chr9	2913880	2913884	4
Deletion	Chr9	3653755	3653756	1
Deletion	Chr5	3954177	3954178	1
Deletion	Chr12	4233833	4233835	2
Deletion	Chr5	4517553	4517565	12
Deletion	Chr8	4777487	4777504	17
Deletion	Chr6	5477612	5477627	15
Deletion	Chr8	6383413	6383414	1
Deletion	Chr4	8745263	8745265	2
Deletion	Chr11	9701675	9701677	2
Deletion	Chr7	9848281	9848283	2
Deletion	Chr6	11319269	11319270	1
Deletion	Chr5	12061543	12061544	1
Deletion	Chr3	13208911	13208912	1
Deletion	Chr5	13949273	13949274	1
Deletion	Chr3	15789634	15789635	1
Deletion	Chr2	16477033	16477036	3
Deletion	Chr5	19520112	19520120	8
Deletion	Chr12	21110106	21110108	2
Deletion	Chr4	21187185	21187186	1
Deletion	Chr3	21255700	21255702	2
Deletion	Chr8	21734592	21734594	2
Deletion	Chr7	22763969	22763970	1
Deletion	Chr12	23652369	23652370	1
Deletion	Chr11	26622462	26622463	1
Deletion	Chr3	32540349	32540354	5
Deletion	Chr3	35032123	35032125	2

Insertions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20169290	20169291	2
Insertion	Chr1	32185290	32185290	1
Insertion	Chr1	40508245	40508355	111
Insertion	Chr10	2821743	2821810	68
Insertion	Chr11	8006404	8006459	56
Insertion	Chr12	4835162	4835163	2
Insertion	Chr12	6171473	6171474	2
Insertion	Chr2	13691040	13691041	2
Insertion	Chr2	25678708	25678749	42
Insertion	Chr2	34738868	34738885	18
Insertion	Chr3	14105130	14105131	2
Insertion	Chr3	14401854	14401855	2
Insertion	Chr3	16685616	16685616	1
Insertion	Chr3	19772580	19772582	3
Insertion	Chr3	31127909	31127910	2
Insertion	Chr3	34562746	34562838	93
Insertion	Chr4	1559843	1559843	1
Insertion	Chr4	18677424	18677425	2
Insertion	Chr4	9530080	9530080	1
Insertion	Chr5	10373502	10373502	1
Insertion	Chr5	12702223	12702223	1
Insertion	Chr5	16384764	16384781	18
Insertion	Chr5	5062025	5062025	1
Insertion	Chr5	9871996	9871996	1
Insertion	Chr6	10659381	10659388	8
Insertion	Chr6	20641078	20641153	76
Insertion	Chr6	21594347	21594347	1
Insertion	Chr6	4130423	4130426	4
Insertion	Chr6	9516062	9516092	31
Insertion	Chr7	10511877	10511901	25
Insertion	Chr7	1374025	1374025	1
Insertion	Chr8	10826472	10826472	1
Insertion	Chr8	13642396	13642396	1	LOC_Os08g22680
Insertion	Chr8	16899200	16899205	6
Insertion	Chr8	18376583	18376584	2
Insertion	Chr8	25744699	25744700	2
Insertion	Chr8	5022341	5022343	3
Insertion	Chr9	10600672	10600675	4
Insertion	Chr9	13645715	13645719	5

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	24141350	24322311	LOC_Os12g39200
Inversion	Chr12	24141363	24322324	LOC_Os12g39200
Inversion	Chr5	26409709	26416496
Inversion	Chr5	26409723	26416504

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	728668	Chr2	13225535
Translocation	Chr11	4272681	Chr10	9303963
Translocation	Chr8	10913923	Chr5	9160327
Translocation	Chr7	15550460	Chr5	5643364
Translocation	Chr11	15613258	Chr9	749691
Translocation	Chr8	16304115	Chr1	10794244
Translocation	Chr7	19482327	Chr6	19245667
Translocation	Chr11	20626394	Chr10	1329135
Translocation	Chr12	23212713	Chr4	22896146
Translocation	Chr12	26611650	Chr9	1675493

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