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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12201198	G-C	HET	INTERGENIC
SBS	Chr1	15596932	C-A	HOMO	INTERGENIC
SBS	Chr10	3635517	A-C	HET	INTERGENIC
SBS	Chr11	18838613	G-A	HOMO	INTERGENIC
SBS	Chr11	25183854	T-C	HET	INTERGENIC
SBS	Chr12	11495046	A-T	HOMO	INTERGENIC
SBS	Chr12	11871698	C-T	HET	INTERGENIC
SBS	Chr12	14330502	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24960
SBS	Chr12	17873062	A-T	HOMO	INTERGENIC
SBS	Chr12	24043240	G-A	HOMO	INTERGENIC
SBS	Chr2	9031833	T-C	HOMO	INTERGENIC
SBS	Chr2	9031842	A-T	HOMO	INTERGENIC
SBS	Chr3	14623132	C-T	HET	INTERGENIC
SBS	Chr3	1541871	C-G	HET	INTERGENIC
SBS	Chr3	17270623	G-A	HET	INTERGENIC
SBS	Chr3	18227078	A-T	HET	INTERGENIC
SBS	Chr3	21816983	C-T	HET	INTRON
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr3	8358049	T-C	HET	INTERGENIC
SBS	Chr4	19965044	G-A	HOMO	INTERGENIC
SBS	Chr4	24717863	A-C	HET	INTERGENIC
SBS	Chr4	31671858	T-C	HOMO	INTRON
SBS	Chr4	9212804	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16810
SBS	Chr5	12804950	G-A	HET	INTERGENIC
SBS	Chr5	17197849	C-A	HET	UTR_5_PRIME
SBS	Chr5	19628689	C-T	HOMO	INTERGENIC
SBS	Chr6	7855170	T-A	HOMO	INTERGENIC
SBS	Chr6	942302	G-A	HET	INTRON
SBS	Chr7	12403177	C-T	HOMO	INTERGENIC
SBS	Chr7	22365025	C-G	HET	INTERGENIC
SBS	Chr7	2635488	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05610
SBS	Chr8	1078981	G-A	HET	INTERGENIC
SBS	Chr8	14299832	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23620
SBS	Chr8	17326338	C-T	HET	INTERGENIC
SBS	Chr8	6224330	A-C	HET	INTERGENIC
SBS	Chr9	21812197	A-G	HET	INTRON
SBS	Chr9	21812198	A-G	HET	INTRON
SBS	Chr9	3997712	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g07860

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	107234	107236	2
Deletion	Chr9	130379	130380	1
Deletion	Chr4	535983	535992	9
Deletion	Chr8	603684	603685	1
Deletion	Chr2	3667280	3667290	10
Deletion	Chr9	5730508	5730509	1
Deletion	Chr1	6161511	6161512	1
Deletion	Chr7	6209039	6209040	1
Deletion	Chr7	6798318	6798319	1
Deletion	Chr6	8610052	8610053	1
Deletion	Chr12	9118198	9118199	1
Deletion	Chr7	9590959	9590960	1
Deletion	Chr10	9732795	9732796	1
Deletion	Chr9	9851225	9851226	1
Deletion	Chr9	10594467	10594469	2
Deletion	Chr6	11088113	11088114	1
Deletion	Chr1	12168241	12168243	2	LOC_Os01g21690
Deletion	Chr12	12299692	12299693	1
Deletion	Chr8	12812744	12812755	11
Deletion	Chr2	13698430	13698751	321
Deletion	Chr12	17798001	17853000	54999	8
Deletion	Chr2	18782842	18782879	37
Deletion	Chr10	20077856	20077857	1
Deletion	Chr5	20267338	20267350	12
Deletion	Chr11	21126278	21126280	2
Deletion	Chr11	24787732	24787755	23
Deletion	Chr2	24878001	24887000	8999	LOC_Os02g44720
Deletion	Chr3	28218060	28218061	1
Deletion	Chr6	29550967	29550968	1
Deletion	Chr1	31730768	31730769	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	5665704	5665706	3
Insertion	Chr11	4357002	4357003	2
Insertion	Chr2	1417698	1417699	2
Insertion	Chr2	20486311	20486326	16
Insertion	Chr2	26721325	26721325	1
Insertion	Chr3	23901198	23901198	1
Insertion	Chr3	24036385	24036469	85
Insertion	Chr3	32397597	32397640	44
Insertion	Chr3	9533618	9533619	2
Insertion	Chr4	21210997	21211007	11
Insertion	Chr5	14520416	14520417	2
Insertion	Chr5	20602816	20602823	8
Insertion	Chr6	15456150	15456150	1
Insertion	Chr6	9006320	9006320	1
Insertion	Chr8	16171403	16171403	1
Insertion	Chr8	3731944	3731944	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr4	9589267	9590595
Inversion	Chr5	17824207	18135031
Inversion	Chr5	17824221	18135105
Inversion	Chr2	18810277	18810823
Inversion	Chr4	18932078	18933045
Inversion	Chr11	23519636	23519997
Inversion	Chr3	34287082	34288774

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	985230	Chr1	25907714
Translocation	Chr8	6088991	Chr3	3629975
Translocation	Chr8	6089753	Chr3	3629966
Translocation	Chr5	12223018	Chr1	40255502
Translocation	Chr5	12223344	Chr1	27211624
Translocation	Chr11	23519623	Chr4	24265986	LOC_Os04g40874
Translocation	Chr11	23522693	Chr4	24270555	LOC_Os11g39510
Translocation	Chr11	25115600	Chr5	26317109

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