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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28071529	C-A	HOMO	INTRON
SBS	Chr10	23172769	T-C	HET	INTRON
SBS	Chr11	16079537	C-G	HET	INTERGENIC
SBS	Chr11	18018371	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g30970
SBS	Chr11	23606374	C-T	HET	INTERGENIC
SBS	Chr12	11036332	G-T	HOMO	INTERGENIC
SBS	Chr12	11519557	A-C	HOMO	INTERGENIC
SBS	Chr12	21122262	G-C	HET	INTERGENIC
SBS	Chr12	5695033	T-C	HOMO	INTRON
SBS	Chr2	12289667	C-T	HET	INTRON
SBS	Chr2	25674067	T-C	HET	UTR_5_PRIME
SBS	Chr2	27231296	C-T	HET	INTERGENIC
SBS	Chr3	216024	G-A	HOMO	INTERGENIC
SBS	Chr3	35301574	C-A	HET	INTERGENIC
SBS	Chr4	13532525	A-C	HOMO	INTERGENIC
SBS	Chr4	26598603	G-A	HET	INTERGENIC
SBS	Chr4	27667028	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g46670
SBS	Chr4	28510509	G-T	HET	INTERGENIC
SBS	Chr4	34225230	C-A	HOMO	INTERGENIC
SBS	Chr5	1599817	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	13741434	C-T	HET	INTERGENIC
SBS	Chr6	6247525	A-G	HET	UTR_5_PRIME
SBS	Chr6	9107566	C-T	HET	INTERGENIC
SBS	Chr7	10032723	T-A	HET	INTRON
SBS	Chr7	10607278	C-T	HET	INTERGENIC
SBS	Chr7	78110	A-T	HET	INTRON
SBS	Chr8	10892907	T-A	HET	INTERGENIC
SBS	Chr8	21841117	T-A	HET	INTERGENIC
SBS	Chr9	109832	A-T	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1916845	1916852	7	LOC_Os08g03990
Deletion	Chr2	2814602	2814603	1	LOC_Os02g05720
Deletion	Chr10	3145218	3145219	1
Deletion	Chr6	3762508	3762514	6
Deletion	Chr11	3986114	3986115	1
Deletion	Chr5	4446139	4446140	1
Deletion	Chr6	5065652	5065660	8
Deletion	Chr7	5633736	5633737	1	LOC_Os07g10470
Deletion	Chr8	6294268	6294269	1	LOC_Os08g10680
Deletion	Chr4	6598668	6598669	1
Deletion	Chr11	7731082	7731096	14
Deletion	Chr6	8410048	8410049	1	LOC_Os06g14810
Deletion	Chr8	9279448	9279449	1
Deletion	Chr12	9615535	9615628	93
Deletion	Chr3	12759629	12759656	27
Deletion	Chr12	16890436	16890438	2
Deletion	Chr10	17392605	17392628	23
Deletion	Chr2	17567001	17612000	44999	5
Deletion	Chr5	19603853	19603858	5	LOC_Os05g33370
Deletion	Chr12	21152828	21152832	4
Deletion	Chr3	23681838	23681839	1
Deletion	Chr2	26131738	26131744	6
Deletion	Chr7	27252376	27252386	10
Deletion	Chr11	27615479	27615489	10
Deletion	Chr4	28104062	28104151	89
Deletion	Chr2	29460847	29460854	7
Deletion	Chr4	29699250	29699251	1
Deletion	Chr1	30295519	30295532	13	LOC_Os01g52690
Deletion	Chr2	34528819	34528823	4
Deletion	Chr1	37704058	37704108	50

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31479258	31479259	2
Insertion	Chr10	22789987	22790007	21
Insertion	Chr10	6366909	6366910	2
Insertion	Chr11	26982523	26982523	1
Insertion	Chr3	8825062	8825070	9
Insertion	Chr3	9059126	9059128	3
Insertion	Chr4	7871912	7871934	23
Insertion	Chr5	11149272	11149272	1
Insertion	Chr6	1246778	1246804	27
Insertion	Chr7	13708741	13708741	1
Insertion	Chr7	14422450	14422450	1	LOC_Os07g25230
Insertion	Chr7	20331374	20331374	1
Insertion	Chr8	144604	144604	1
Insertion	Chr8	17291236	17291236	1
Insertion	Chr8	3876548	3876548	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	15845491	15847588
Inversion	Chr2	17568190	18006530
Inversion	Chr2	17622719	18006537	LOC_Os02g29630

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2741905	Chr7	10663580	2
Translocation	Chr4	12290058	Chr3	34340975	LOC_Os03g60380
Translocation	Chr7	18542654	Chr4	17812135

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