Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3744876	T-A	HET	INTERGENIC
SBS	Chr11	11938498	G-A	HET	INTERGENIC
SBS	Chr11	14707325	C-T	HET	INTRON
SBS	Chr11	18222863	C-A	HET	INTERGENIC
SBS	Chr11	24140215	T-C	HOMO	INTERGENIC
SBS	Chr11	25455408	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g42250
SBS	Chr12	14068105	G-C	HOMO	INTERGENIC
SBS	Chr12	195570	T-A	HOMO	INTERGENIC
SBS	Chr2	20429320	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34160
SBS	Chr2	30193443	G-A	HOMO	INTERGENIC
SBS	Chr2	31773576	T-C	HOMO	UTR_3_PRIME
SBS	Chr2	32750792	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53530
SBS	Chr2	34475701	T-C	HOMO	INTERGENIC
SBS	Chr2	68919	A-G	HET	INTERGENIC
SBS	Chr3	11651336	A-G	HOMO	UTR_5_PRIME
SBS	Chr3	12666729	C-T	HOMO	INTERGENIC
SBS	Chr3	7992392	A-T	HOMO	INTRON
SBS	Chr4	20942518	A-C	HOMO	INTRON
SBS	Chr4	25430261	C-T	HET	INTERGENIC
SBS	Chr4	33511067	G-A	HOMO	INTERGENIC
SBS	Chr4	7481375	C-A	HOMO	INTERGENIC
SBS	Chr5	20914055	G-A	HET	INTRON
SBS	Chr5	22291931	T-C	HET	INTERGENIC
SBS	Chr6	24778215	G-A	HET	INTERGENIC
SBS	Chr7	1449528	G-C	HET	SYNONYMOUS_CODING
SBS	Chr7	16536956	A-T	HOMO	INTERGENIC
SBS	Chr7	19059338	T-C	HOMO	INTRON
SBS	Chr7	27275496	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45680
SBS	Chr8	10030938	A-G	HET	INTERGENIC
SBS	Chr8	10539215	C-T	HET	INTERGENIC
SBS	Chr8	10890453	G-A	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	4052874	4052876	2
Deletion	Chr2	4083385	4083389	4	LOC_Os02g07800
Deletion	Chr12	5011736	5011829	93
Deletion	Chr9	7115595	7115692	97
Deletion	Chr2	8123449	8123457	8
Deletion	Chr2	9242777	9242779	2
Deletion	Chr5	10636001	10674000	37999	5
Deletion	Chr12	14064739	14064741	2
Deletion	Chr3	15300188	15300198	10
Deletion	Chr8	15762409	15762416	7
Deletion	Chr7	15934295	15934296	1
Deletion	Chr1	16427628	16427646	18	LOC_Os01g29320
Deletion	Chr5	17136987	17136991	4
Deletion	Chr7	18139912	18139914	2	LOC_Os07g30650
Deletion	Chr1	18477918	18477936	18
Deletion	Chr7	19491521	19491532	11
Deletion	Chr3	19977899	19977910	11
Deletion	Chr7	20469627	20469631	4
Deletion	Chr6	21780344	21780365	21
Deletion	Chr10	21785205	21785216	11
Deletion	Chr4	22612001	22612010	9
Deletion	Chr2	22702097	22702099	2
Deletion	Chr4	26083643	26083644	1	LOC_Os04g44000
Deletion	Chr12	27236984	27236985	1
Deletion	Chr1	29212171	29212172	1
Deletion	Chr1	30447645	30447659	14	LOC_Os01g52970
Deletion	Chr3	31180263	31180287	24

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14351763	14351765	3
Insertion	Chr1	23304124	23304124	1
Insertion	Chr3	9431456	9431467	12
Insertion	Chr4	22379339	22379463	125
Insertion	Chr4	26611044	26611044	1
Insertion	Chr6	11658603	11658604	2
Insertion	Chr6	19365850	19365850	1
Insertion	Chr8	11243534	11243536	3

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16209412	16586979
Inversion	Chr8	16209419	16586980
Inversion	Chr3	26098372	26196038
Inversion	Chr3	26098376	26196037
Inversion	Chr3	26463488	27191784
Inversion	Chr3	26463498	27191796
Inversion	Chr2	31352121	31517552
Inversion	Chr2	31352131	31517659	LOC_Os02g51440

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	10659256	Chr6	15618050
Translocation	Chr12	13352820	Chr1	18686327

Main menu