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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24974132	C-T	HOMO	INTERGENIC
SBS	Chr1	3433747	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g07280
SBS	Chr1	5932512	C-A	HET	INTRON
SBS	Chr10	12427593	A-G	HET	INTERGENIC
SBS	Chr10	22358169	C-A	HET	INTERGENIC
SBS	Chr10	22358170	T-A	HET	INTERGENIC
SBS	Chr10	3192187	G-T	HET	INTERGENIC
SBS	Chr10	6617679	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	13052102	C-T	HOMO	INTERGENIC
SBS	Chr11	8801887	G-A	HOMO	INTERGENIC
SBS	Chr12	16600706	C-G	HET	INTERGENIC
SBS	Chr2	15626683	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26614
SBS	Chr2	15911363	G-A	HET	INTRON
SBS	Chr2	27088884	G-A	HET	INTERGENIC
SBS	Chr2	35271652	G-T	HET	UTR_5_PRIME
SBS	Chr2	35271654	G-T	HET	START_GAINED
SBS	Chr2	6690898	C-T	HET	INTERGENIC
SBS	Chr3	29166787	G-A	HOMO	INTERGENIC
SBS	Chr4	11553475	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20640
SBS	Chr4	18395644	C-T	HET	INTERGENIC
SBS	Chr4	321717	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g01480
SBS	Chr6	14041752	G-T	HET	INTERGENIC
SBS	Chr6	24370798	C-A	HET	UTR_3_PRIME
SBS	Chr6	26238325	A-G	HET	INTERGENIC
SBS	Chr6	7339143	T-C	HET	INTRON
SBS	Chr7	11121085	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18790
SBS	Chr7	14225238	C-G	HET	INTERGENIC
SBS	Chr7	7853027	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr8	8460526	C-T	HET	STOP_GAINED	LOC_Os08g14170

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	270161	270170	9	LOC_Os02g01460
Deletion	Chr7	1185382	1185397	15	LOC_Os07g03110
Deletion	Chr7	1409279	1409283	4
Deletion	Chr9	3292717	3292718	1
Deletion	Chr4	4853057	4853143	86
Deletion	Chr1	6381738	6381742	4	LOC_Os01g11790
Deletion	Chr6	7029076	7029078	2
Deletion	Chr1	8177047	8177049	2
Deletion	Chr5	8759769	8759778	9
Deletion	Chr3	11436983	11436984	1
Deletion	Chr5	12942218	12942230	12
Deletion	Chr7	13632907	13632908	1
Deletion	Chr11	15724983	15724991	8
Deletion	Chr1	16855373	16855374	1
Deletion	Chr4	19849657	19849661	4	LOC_Os04g32870
Deletion	Chr2	19890360	19890402	42
Deletion	Chr12	20326729	20326730	1
Deletion	Chr10	23083175	23083180	5
Deletion	Chr4	23640298	23640304	6
Deletion	Chr3	23921453	23921471	18
Deletion	Chr3	24007635	24007636	1
Deletion	Chr7	24223393	24223403	10
Deletion	Chr1	25822942	25822990	48
Deletion	Chr4	26058546	26058552	6
Deletion	Chr6	26435941	26435942	1	LOC_Os06g43880
Deletion	Chr12	26686172	26686182	10
Deletion	Chr5	27466641	27466649	8	LOC_Os05g47910
Deletion	Chr4	28032467	28032468	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	7232157	7232166	10
Insertion	Chr2	7771452	7771452	1
Insertion	Chr6	30058988	30058989	2
Insertion	Chr8	26847326	26847328	3
Insertion	Chr8	8953700	8953727	28

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3853850	3912700
Inversion	Chr3	3853867	3912703
Inversion	Chr1	12366264	12512344	LOC_Os01g22010
Inversion	Chr4	16096371	16494242
Inversion	Chr3	25369655	25835250
Inversion	Chr3	25814853	25835245

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	10812725	Chr6	24395506	LOC_Os07g18240
Translocation	Chr6	19238242	Chr4	11584971
Translocation	Chr10	22358960	Chr6	28454356

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