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Mutant Information

Mutant Name	FN2958-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2958-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14171367	G-A	HOMO	INTRON
SBS	Chr1	14437846	G-T	HOMO	UTR_3_PRIME
SBS	Chr1	24644470	G-A	HOMO	INTERGENIC
SBS	Chr1	27468427	C-G	HOMO	INTERGENIC
SBS	Chr1	43143213	A-T	HOMO	INTERGENIC
SBS	Chr1	5688004	C-A	HET	INTERGENIC
SBS	Chr11	18139043	G-A	HOMO	INTERGENIC
SBS	Chr11	7587452	G-A	HOMO	START_GAINED
SBS	Chr12	8362675	G-A	HOMO	INTERGENIC
SBS	Chr2	20437789	G-T	HOMO	STOP_GAINED	LOC_Os02g34170
SBS	Chr2	20437790	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g34170
SBS	Chr2	22933696	C-T	HET	INTERGENIC
SBS	Chr2	24845122	A-G	HET	INTERGENIC
SBS	Chr2	32760531	C-T	HET	INTERGENIC
SBS	Chr2	475052	C-A	HOMO	INTERGENIC
SBS	Chr2	6790359	A-T	HET	INTERGENIC
SBS	Chr3	15785150	A-G	HOMO	INTERGENIC
SBS	Chr3	20024833	T-A	HET	INTERGENIC
SBS	Chr3	2624617	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05360
SBS	Chr4	23665718	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39710
SBS	Chr5	27739659	C-T	HOMO	INTERGENIC
SBS	Chr6	13779872	C-T	HET	INTERGENIC
SBS	Chr7	28079204	G-T	HOMO	INTRON
SBS	Chr8	12604118	G-T	HET	INTERGENIC
SBS	Chr8	27332220	A-G	HOMO	INTERGENIC
SBS	Chr8	734813	C-G	HET	UTR_3_PRIME
SBS	Chr9	2239466	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04240

Deletions: 47

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	233169	233170	1	LOC_Os02g01390
Deletion	Chr2	461066	461080	14	LOC_Os02g01840
Deletion	Chr10	1651292	1651293	1
Deletion	Chr12	2085792	2085793	1
Deletion	Chr4	2098001	2115000	16999	4
Deletion	Chr7	2867141	2867148	7
Deletion	Chr9	3285419	3285420	1
Deletion	Chr1	3441735	3441761	26
Deletion	Chr3	4051219	4051220	1
Deletion	Chr7	4217384	4217392	8
Deletion	Chr2	6351001	6364000	12999
Deletion	Chr8	6443606	6443634	28
Deletion	Chr2	6893754	6893755	1
Deletion	Chr6	7727540	7727546	6
Deletion	Chr5	7898988	7898990	2
Deletion	Chr4	7997173	7997175	2
Deletion	Chr10	9015008	9015009	1
Deletion	Chr10	9015152	9015153	1
Deletion	Chr8	9579987	9579988	1
Deletion	Chr8	9651378	9651380	2	LOC_Os08g15870
Deletion	Chr7	9681973	9681976	3
Deletion	Chr5	10058985	10058986	1
Deletion	Chr4	12074001	12086000	11999	2
Deletion	Chr7	12148653	12148654	1
Deletion	Chr3	12574046	12574047	1
Deletion	Chr2	13752849	13753004	155
Deletion	Chr11	15326088	15326089	1
Deletion	Chr7	16461257	16461265	8
Deletion	Chr3	16859312	16859313	1
Deletion	Chr12	17132980	17132981	1
Deletion	Chr6	17171382	17171418	36
Deletion	Chr5	17562409	17562439	30
Deletion	Chr1	18210515	18210516	1
Deletion	Chr4	18325807	18325808	1
Deletion	Chr5	18535639	18535645	6	LOC_Os05g31830
Deletion	Chr10	18539290	18539294	4	LOC_Os10g34710
Deletion	Chr2	23340124	23340125	1
Deletion	Chr12	24331808	24331928	120
Deletion	Chr5	27602601	27602616	15	LOC_Os05g48150
Deletion	Chr7	29352072	29352087	15
Deletion	Chr2	30254681	30254682	1	LOC_Os02g49500
Deletion	Chr2	30850536	30850539	3
Deletion	Chr1	31175418	31175423	5
Deletion	Chr4	31709157	31709158	1
Deletion	Chr4	32262548	32262581	33
Deletion	Chr4	33393892	33393893	1
Deletion	Chr1	40289276	40289277	1

Insertions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13350422	13350442	21
Insertion	Chr1	33623573	33623573	1
Insertion	Chr10	14085074	14085074	1
Insertion	Chr10	5134468	5134468	1
Insertion	Chr11	12082918	12083025	108
Insertion	Chr12	13361956	13361959	4
Insertion	Chr12	15228442	15228455	14	LOC_Os12g26140
Insertion	Chr12	20277984	20277988	5
Insertion	Chr12	6994745	6994745	1
Insertion	Chr4	16920537	16920537	1
Insertion	Chr4	29551237	29551296	60
Insertion	Chr4	3005728	3005728	1
Insertion	Chr4	5456370	5456370	1
Insertion	Chr4	9553067	9553067	1
Insertion	Chr5	2689821	2689821	1
Insertion	Chr6	13470604	13470608	5
Insertion	Chr6	21413656	21413680	25
Insertion	Chr7	21249680	21249681	2
Insertion	Chr7	27253455	27253455	1
Insertion	Chr7	5051356	5051356	1
Insertion	Chr8	13869200	13869200	1
Insertion	Chr8	16212030	16212031	2
Insertion	Chr8	16462824	16462845	22
Insertion	Chr8	18060585	18060588	4
Insertion	Chr8	19481080	19481109	30
Insertion	Chr8	5029213	5029217	5
Insertion	Chr8	7313746	7313746	1
Insertion	Chr9	10600776	10600779	4
Insertion	Chr9	13454051	13454051	1
Insertion	Chr9	2829203	2829203	1
Insertion	Chr9	5496088	5496088	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	30442183	30446256
Inversion	Chr2	30442189	30446261

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2005036	Chr11	11393167
Translocation	Chr8	2048230	Chr1	293034	LOC_Os01g01580
Translocation	Chr10	7977844	Chr1	17134626
Translocation	Chr6	10800796	Chr4	16769161
Translocation	Chr12	14078253	Chr8	10124019	LOC_Os08g16540
Translocation	Chr8	20135631	Chr1	2999830
Translocation	Chr11	27827270	Chr6	25897961
Translocation	Chr4	33111949	Chr2	8784288	LOC_Os04g55620

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