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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11018735	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	18695949	G-A	HET	INTERGENIC
SBS	Chr2	19632397	A-T	HET	INTERGENIC
SBS	Chr2	20036548	T-G	HET	INTERGENIC
SBS	Chr2	21185472	C-T	HET	INTERGENIC
SBS	Chr3	7498512	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g13830
SBS	Chr3	17541647	G-A	HOMO	INTERGENIC
SBS	Chr3	20310418	C-T	HOMO	INTERGENIC
SBS	Chr3	20310419	A-T	HOMO	INTERGENIC
SBS	Chr3	28478290	C-T	HOMO	INTRON
SBS	Chr3	35851135	C-T	HET	INTRON
SBS	Chr4	8909004	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16400
SBS	Chr5	22883234	C-T	HET	INTERGENIC
SBS	Chr7	132463	A-G	HET	INTERGENIC
SBS	Chr7	7202681	C-T	HET	INTERGENIC
SBS	Chr7	21998655	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g36720
SBS	Chr8	22577877	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35800
SBS	Chr8	22645991	A-C	HET	SYNONYMOUS_CODING
SBS	Chr8	27887799	C-A	HET	INTERGENIC
SBS	Chr9	9091813	A-T	HET	INTERGENIC
SBS	Chr10	3240263	C-T	HET	INTRON
SBS	Chr10	4473759	G-T	HET	INTERGENIC
SBS	Chr10	16211972	T-C	HET	INTERGENIC
SBS	Chr10	19218323	C-T	HET	INTERGENIC
SBS	Chr11	14820696	A-T	HET	INTERGENIC
SBS	Chr11	15096452	C-T	HOMO	INTERGENIC
SBS	Chr12	7410190	T-A	HET	UTR_3_PRIME
SBS	Chr12	22477819	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g36690
SBS	Chr12	22477820	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1527992	1528082	90
Deletion	Chr12	4419501	4419512	11
Deletion	Chr4	5293511	5293512	1
Deletion	Chr12	5447822	5447823	1
Deletion	Chr9	5560396	5560397	1
Deletion	Chr9	6694001	6737000	42999	5
Deletion	Chr8	6771211	6771212	1
Deletion	Chr4	7655009	7655011	2
Deletion	Chr7	8694006	8694007	1
Deletion	Chr5	9717001	9743000	25999	3
Deletion	Chr11	11222437	11222439	2
Deletion	Chr2	11261001	11282000	20999	3
Deletion	Chr7	11802472	11802476	4
Deletion	Chr1	12473427	12473431	4
Deletion	Chr5	13040001	13072000	31999	3
Deletion	Chr10	13314422	13314435	13
Deletion	Chr3	13447888	13447923	35	LOC_Os03g23230
Deletion	Chr7	14674001	14698000	23999	4
Deletion	Chr5	15397960	15397961	1
Deletion	Chr11	15646001	15693000	46999	6
Deletion	Chr11	15770251	15770299	48
Deletion	Chr12	16443505	16443507	2
Deletion	Chr1	16657119	16657121	2
Deletion	Chr10	17062669	17062670	1
Deletion	Chr6	17084368	17084419	51	LOC_Os06g29750
Deletion	Chr8	18395712	18395713	1
Deletion	Chr7	20943388	20943394	6
Deletion	Chr6	22482944	22482954	10
Deletion	Chr5	27816043	27816071	28
Deletion	Chr2	30163860	30163870	10
Deletion	Chr1	34239790	34239791	1
Deletion	Chr2	35270001	35284000	13999	4

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	22286518	22286519	2
Insertion	Chr3	8952516	8952517	2
Insertion	Chr6	4597882	4597883	2
Insertion	Chr6	25551052	25551053	2
Insertion	Chr2	9139264	9139264	1	LOC_Os02g16060
Insertion	Chr2	15267660	15267661	2
Insertion	Chr3	11687381	11687414	34
Insertion	Chr4	1058037	1058037	1
Insertion	Chr4	2655878	2655880	3
Insertion	Chr6	11923167	11923167	1
Insertion	Chr7	2658155	2658258	104
Insertion	Chr7	21202638	21202641	4
Insertion	Chr7	27613274	27613274	1
Insertion	Chr8	17284959	17284959	1
Insertion	Chr8	26825109	26825169	61
Insertion	Chr9	21645029	21645029	1
Insertion	Chr10	15482047	15482048	2
Insertion	Chr12	9191945	9191945	1
Insertion	Chr12	20737222	20737222	1
Insertion	Chr12	25500420	25500420	1

No Inversion

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	2747255	Chr5	977146
Translocation	Chr10	9175607	Chr3	22377469
Translocation	Chr10	9175612	Chr3	22377049
Translocation	Chr11	11221807	Chr2	35243787	LOC_Os02g57520
Translocation	Chr4	11231489	Chr3	4244405
Translocation	Chr12	18487858	Chr11	18175911
Translocation	Chr11	23404412	Chr2	35266784	LOC_Os11g39310
Translocation	Chr11	23404417	Chr3	34653225	LOC_Os11g39310
Translocation	Chr11	23404730	Chr3	34653219	LOC_Os11g39310
Translocation	Chr8	26997820	Chr5	23804825

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