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Mutant Information

Mutant Name	FN2970-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2970-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21442377	G-A	HOMO	INTERGENIC
SBS	Chr1	39410801	T-A	HET	INTERGENIC
SBS	Chr1	39410806	T-A	HET	INTERGENIC
SBS	Chr1	40490384	C-A	HET	INTERGENIC
SBS	Chr2	14785757	G-T	HET	INTERGENIC
SBS	Chr2	16080801	G-A	HET	INTERGENIC
SBS	Chr2	19067207	G-A	HET	INTERGENIC
SBS	Chr2	28489227	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	29306489	C-T	HOMO	INTRON
SBS	Chr3	9773590	C-G	HET	INTERGENIC
SBS	Chr3	18105228	C-T	HET	INTERGENIC
SBS	Chr3	20601228	G-A	HET	INTERGENIC
SBS	Chr3	20747778	A-T	HET	INTERGENIC
SBS	Chr3	27454431	T-C	HOMO	INTERGENIC
SBS	Chr4	2013827	G-C	HET	INTERGENIC
SBS	Chr4	4682026	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g08610
SBS	Chr4	17670352	A-C	HOMO	INTRON
SBS	Chr4	34558967	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g58020
SBS	Chr4	35479638	G-A	HET	INTERGENIC
SBS	Chr5	143975	G-A	HET	UTR_5_PRIME
SBS	Chr5	18627717	T-C	HET	INTERGENIC
SBS	Chr5	20591241	T-A	HET	INTERGENIC
SBS	Chr6	1243518	G-A	HET	INTERGENIC
SBS	Chr6	7544400	C-T	HET	INTERGENIC
SBS	Chr8	9030918	G-A	HOMO	INTRON
SBS	Chr8	20306376	G-A	HOMO	INTERGENIC
SBS	Chr9	8752526	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14730
SBS	Chr9	9840475	T-G	HET	INTERGENIC
SBS	Chr9	12899378	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g21370
SBS	Chr9	12939582	A-G	HOMO	INTRON
SBS	Chr9	17277020	G-A	HOMO	INTERGENIC
SBS	Chr9	19847871	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	19847872	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g33610
SBS	Chr9	20927537	G-A	HOMO	INTERGENIC
SBS	Chr10	13810701	T-C	HET	INTERGENIC
SBS	Chr11	6353123	C-A	HOMO	INTERGENIC
SBS	Chr11	6353124	T-C	HOMO	INTERGENIC
SBS	Chr11	6353125	C-A	HOMO	INTERGENIC
SBS	Chr11	8509111	T-C	HET	INTERGENIC
SBS	Chr11	15535465	C-T	HET	INTERGENIC
SBS	Chr11	18735167	C-A	HET	INTERGENIC

Deletions: 69

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1	845000	844999	138
Deletion	Chr7	545670	545673	3
Deletion	Chr9	682001	702000	19999	4
Deletion	Chr11	1023001	1049000	25999	6
Deletion	Chr1	3951643	3951645	2
Deletion	Chr4	4187104	4187108	4
Deletion	Chr10	4398001	4416000	17999	2
Deletion	Chr9	4753131	4753204	73
Deletion	Chr9	4904955	4904963	8
Deletion	Chr4	5019177	5019192	15
Deletion	Chr8	5896001	5907000	10999	2
Deletion	Chr3	5913001	5928000	14999	2
Deletion	Chr10	6197001	6213000	15999	2
Deletion	Chr5	6821435	6821436	1
Deletion	Chr10	7286001	7317000	30999	4
Deletion	Chr8	7414078	7414079	1
Deletion	Chr2	7906071	7906072	1
Deletion	Chr3	7925608	7925623	15	LOC_Os03g14600
Deletion	Chr11	8142004	8142007	3
Deletion	Chr11	8145616	8145641	25
Deletion	Chr11	8237001	8247000	9999	2
Deletion	Chr8	8545561	8545562	1
Deletion	Chr11	8588766	8588767	1
Deletion	Chr4	8778001	8812000	33999	6
Deletion	Chr5	9004001	9036000	31999	6
Deletion	Chr8	9064370	9064379	9
Deletion	Chr9	9097561	9097570	9
Deletion	Chr8	9621855	9621858	3	LOC_Os08g15830
Deletion	Chr2	10073741	10073742	1
Deletion	Chr9	10082712	10082720	8
Deletion	Chr4	10243001	10265000	21999	4
Deletion	Chr11	10833001	10853000	19999	4
Deletion	Chr5	10936804	10936805	1
Deletion	Chr4	11182846	11182860	14
Deletion	Chr11	11217337	11217341	4
Deletion	Chr1	11333649	11333652	3	LOC_Os01g19960
Deletion	Chr10	11456298	11456359	61
Deletion	Chr12	11616289	11616290	1
Deletion	Chr12	11942001	11966000	23999	3
Deletion	Chr10	12034434	12034441	7
Deletion	Chr5	12189001	12202000	12999	2
Deletion	Chr9	14215712	14215713	1
Deletion	Chr2	14368001	14415000	46999	9
Deletion	Chr1	14574001	14600000	25999	5
Deletion	Chr12	15230814	15230818	4
Deletion	Chr12	15334001	15385000	50999	5
Deletion	Chr2	15932001	15945000	12999	LOC_Os02g27110
Deletion	Chr10	16014368	16014369	1
Deletion	Chr5	16923169	16923181	12
Deletion	Chr6	17068260	17068270	10
Deletion	Chr12	17661072	17661073	1	LOC_Os12g29605
Deletion	Chr8	17771001	17812000	40999	6
Deletion	Chr8	18654001	18671000	16999	3
Deletion	Chr1	19415001	19436000	20999	4
Deletion	Chr10	19877159	19877166	7
Deletion	Chr5	20434001	20561000	126999	21
Deletion	Chr2	21197001	21217000	19999	2
Deletion	Chr1	22146001	22175000	28999	4
Deletion	Chr7	22691001	22713000	21999	4
Deletion	Chr12	23324998	23325003	5
Deletion	Chr12	24420001	24449000	28999	3
Deletion	Chr7	26188965	26188978	13
Deletion	Chr12	26464107	26464121	14
Deletion	Chr11	26601834	26601835	1
Deletion	Chr2	27887001	27908000	20999	4
Deletion	Chr11	28996150	28996151	1
Deletion	Chr6	29376763	29376764	1
Deletion	Chr4	29649444	29649445	1
Deletion	Chr2	31417001	31481000	63999	9

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	21243030	21243032	3
Insertion	Chr1	28904030	28904033	4
Insertion	Chr4	14748003	14748004	2
Insertion	Chr8	27970626	27970627	2
Insertion	Chr11	24199989	24199990	2
Insertion	Chr3	2355512	2355600	89
Insertion	Chr3	20862130	20862130	1
Insertion	Chr3	32944306	32944306	1
Insertion	Chr4	29203953	29203953	1	LOC_Os04g48970
Insertion	Chr4	35261571	35261571	1
Insertion	Chr5	9952385	9952385	1
Insertion	Chr5	25750379	25750380	2
Insertion	Chr6	12007334	12007334	1
Insertion	Chr7	11810008	11810058	51
Insertion	Chr8	6341171	6341172	2
Insertion	Chr9	22463082	22463090	9
Insertion	Chr10	5512865	5512865	1
Insertion	Chr10	13395688	13395691	4
Insertion	Chr11	27065088	27065088	1
Insertion	Chr12	20633789	20633797	9
Insertion	Chr12	25785111	25785130	20

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9980951	10795252
Inversion	Chr8	25051223	25051957
Inversion	Chr6	29889698	29890423	LOC_Os06g49330

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4006323	Chr4	33382101	LOC_Os12g07900
Translocation	Chr12	4006867	Chr4	33382100	LOC_Os12g07900
Translocation	Chr11	10848049	Chr1	17616091	LOC_Os11g19030
Translocation	Chr11	10848486	Chr1	17616073
Translocation	Chr5	14223371	Chr4	50479
Translocation	Chr11	19363264	Chr2	31415402
Translocation	Chr11	19363270	Chr2	31461361	LOC_Os02g51370
Translocation	Chr11	24709249	Chr7	7793849
Translocation	Chr8	28122946	Chr7	840673	LOC_Os07g02440
Translocation	Chr8	28122960	Chr7	840680	LOC_Os07g02440
Translocation	Chr11	28480779	Chr4	3329195

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