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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14234779	C-T	HET	INTERGENIC
SBS	Chr1	25212863	G-A	HET	INTERGENIC
SBS	Chr1	29332721	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51060
SBS	Chr1	40720841	G-A	HET	INTERGENIC
SBS	Chr1	7123120	G-A	HET	INTRON
SBS	Chr1	8318156	T-A	HET	INTERGENIC
SBS	Chr10	14029603	G-T	HOMO	INTERGENIC
SBS	Chr10	3723801	T-C	HOMO	INTERGENIC
SBS	Chr11	23816458	G-A	HOMO	INTERGENIC
SBS	Chr11	2970060	C-T	HET	INTERGENIC
SBS	Chr2	26095772	G-A	HET	INTERGENIC
SBS	Chr2	3598467	C-T	HOMO	INTERGENIC
SBS	Chr3	22210728	T-C	HET	INTERGENIC
SBS	Chr3	26739672	C-T	HET	INTERGENIC
SBS	Chr4	18278912	G-A	HET	INTERGENIC
SBS	Chr4	25300817	G-T	HET	INTERGENIC
SBS	Chr5	21366108	T-A	HET	INTERGENIC
SBS	Chr5	21366109	A-G	HET	INTERGENIC
SBS	Chr5	27954334	G-A	HET	INTERGENIC
SBS	Chr5	7681571	G-C	HOMO	INTERGENIC
SBS	Chr5	8986500	T-A	HOMO	INTRON
SBS	Chr6	10638976	C-T	HET	INTERGENIC
SBS	Chr6	23065808	C-T	HOMO	INTERGENIC
SBS	Chr6	29170169	A-G	HET	INTERGENIC
SBS	Chr6	29675379	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	27681230	G-A	HOMO	INTERGENIC
SBS	Chr9	13074080	C-A	HET	INTERGENIC
SBS	Chr9	17275009	G-A	HET	INTERGENIC
SBS	Chr9	7477506	C-A	HET	INTRON
SBS	Chr9	7928903	A-T	HET	INTRON

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	369407	369408	1
Deletion	Chr1	2855673	2855679	6
Deletion	Chr8	5507932	5507934	2
Deletion	Chr10	6964186	6964196	10
Deletion	Chr10	6988136	6988137	1
Deletion	Chr9	7804136	7804137	1
Deletion	Chr5	7870001	7891000	20999	4
Deletion	Chr4	8198114	8198115	1
Deletion	Chr10	8645288	8645291	3
Deletion	Chr10	8728114	8728115	1
Deletion	Chr11	9355144	9355145	1
Deletion	Chr3	9417001	9439000	21999	5
Deletion	Chr12	10993319	10993324	5
Deletion	Chr9	11860552	11860554	2	LOC_Os09g19810
Deletion	Chr5	12131073	12131074	1
Deletion	Chr5	12661867	12661874	7
Deletion	Chr7	13291001	13308000	16999	3
Deletion	Chr11	13426060	13426061	1
Deletion	Chr5	13439091	13439092	1
Deletion	Chr5	13513211	13513213	2
Deletion	Chr1	14025948	14025949	1
Deletion	Chr2	15080474	15080475	1
Deletion	Chr5	15279212	15279213	1
Deletion	Chr8	17044703	17044706	3
Deletion	Chr8	18146954	18146955	1
Deletion	Chr3	19567719	19568029	310
Deletion	Chr11	21952848	21952849	1	LOC_Os11g37180
Deletion	Chr5	26109001	26121000	11999	3
Deletion	Chr1	26654489	26654497	8
Deletion	Chr1	26943148	26943150	2
Deletion	Chr1	30358655	30358656	1
Deletion	Chr3	35232627	35232631	4
Deletion	Chr1	37285504	37285505	1
Deletion	Chr1	38308001	38384000	75999	10
Deletion	Chr1	38520001	38629000	108999	17
Deletion	Chr1	43086201	43086202	1	LOC_Os01g74390

Insertions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11401812	11401885	74
Insertion	Chr1	32174968	32175022	55
Insertion	Chr10	21842335	21842335	1
Insertion	Chr11	23637084	23637084	1
Insertion	Chr11	26250630	26250630	1	LOC_Os11g43470
Insertion	Chr11	6137372	6137373	2
Insertion	Chr11	9104310	9104310	1
Insertion	Chr12	17164740	17164740	1
Insertion	Chr12	18092712	18092715	4
Insertion	Chr12	18817390	18817390	1
Insertion	Chr12	22243474	22243474	1
Insertion	Chr2	26912952	26912991	40
Insertion	Chr2	5705371	5705379	9
Insertion	Chr3	29252770	29252771	2
Insertion	Chr4	2349290	2349290	1	LOC_Os04g04880
Insertion	Chr4	26597673	26597673	1
Insertion	Chr4	4431807	4431807	1
Insertion	Chr6	21857776	21857777	2
Insertion	Chr6	21995472	21995472	1
Insertion	Chr6	22931000	22931001	2
Insertion	Chr6	75847	75847	1
Insertion	Chr6	9968314	9968314	1
Insertion	Chr7	16690877	16690879	3
Insertion	Chr7	21097155	21097157	3
Insertion	Chr7	28611150	28611150	1
Insertion	Chr8	16861603	16861722	120
Insertion	Chr8	22791197	22791197	1
Insertion	Chr8	6385387	6385387	1
Insertion	Chr8	9568995	9568995	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	13011349	13188326	LOC_Os07g23400
Inversion	Chr7	13011356	13188328	LOC_Os07g23400
Inversion	Chr4	20493803	20494700

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6920482	Chr2	33036911
Translocation	Chr12	6981581	Chr3	2404419	LOC_Os12g12664
Translocation	Chr3	8256556	Chr2	33465394
Translocation	Chr8	13069112	Chr5	5933479
Translocation	Chr12	13966876	Chr2	6928695
Translocation	Chr11	22690016	Chr3	11914698
Translocation	Chr8	23204111	Chr2	34492399
Translocation	Chr4	24131102	Chr3	29024171
Translocation	Chr4	24131112	Chr3	29024165
Translocation	Chr3	25386524	Chr1	15783886
Translocation	Chr12	26149614	Chr7	8252837
Translocation	Chr11	26207283	Chr2	30805326
Translocation	Chr11	26982428	Chr6	23272910
Translocation	Chr3	29762044	Chr1	9051713

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