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Mutant Information

Mutant Name	FN2986-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2986-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5599732	G-A	HOMO	INTERGENIC
SBS	Chr1	6717477	A-G	HET	INTERGENIC
SBS	Chr1	22155551	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g39370
SBS	Chr1	30411004	C-T	HET	INTERGENIC
SBS	Chr1	33602931	C-T	HET	INTRON
SBS	Chr1	38896144	A-G	HET	INTRON
SBS	Chr2	1378058	G-T	HET	INTERGENIC
SBS	Chr2	34566539	A-T	HOMO	INTERGENIC
SBS	Chr3	6793347	A-G	HOMO	INTERGENIC
SBS	Chr4	9327122	G-A	HET	INTERGENIC
SBS	Chr4	28096759	T-A	HOMO	INTRON
SBS	Chr4	31614849	G-A	HOMO	INTERGENIC
SBS	Chr6	20895445	G-T	HET	INTERGENIC
SBS	Chr6	20895447	G-A	HET	INTERGENIC
SBS	Chr7	17505771	T-C	HET	INTRON
SBS	Chr7	25828367	G-A	HET	INTERGENIC
SBS	Chr8	1816990	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	2718578	G-A	HET	INTERGENIC
SBS	Chr8	13596400	A-T	HET	INTERGENIC
SBS	Chr9	17520063	C-G	HET	INTERGENIC
SBS	Chr9	18858498	T-C	HET	INTERGENIC
SBS	Chr9	20396777	C-T	HET	INTERGENIC
SBS	Chr10	700764	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02120
SBS	Chr10	4269680	T-C	HET	INTERGENIC
SBS	Chr10	13667605	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26360
SBS	Chr10	22785592	A-T	HET	INTERGENIC
SBS	Chr11	8671480	G-A	HOMO	INTERGENIC
SBS	Chr12	21858089	G-A	HOMO	INTERGENIC

Deletions: 50

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	401424	401425	1
Deletion	Chr4	579246	579247	1
Deletion	Chr6	1327165	1327176	11
Deletion	Chr7	1376123	1376127	4
Deletion	Chr4	2629660	2629661	1
Deletion	Chr12	2800340	2800379	39
Deletion	Chr4	3018376	3018379	3
Deletion	Chr9	3086489	3086491	2
Deletion	Chr4	3870723	3870737	14
Deletion	Chr12	4126421	4126423	2
Deletion	Chr3	4210497	4210520	23
Deletion	Chr9	4802996	4802998	2
Deletion	Chr12	5274832	5274837	5
Deletion	Chr10	5955544	5955560	16
Deletion	Chr4	7526177	7526178	1
Deletion	Chr4	8197053	8197054	1
Deletion	Chr3	8280252	8280272	20
Deletion	Chr9	8288596	8288634	38
Deletion	Chr1	8466096	8466103	7
Deletion	Chr12	8491772	8491838	66
Deletion	Chr5	8563003	8563008	5
Deletion	Chr6	9104204	9104217	13
Deletion	Chr5	9504842	9504843	1
Deletion	Chr6	9896683	9896694	11
Deletion	Chr8	11680876	11680877	1
Deletion	Chr2	11823998	11824011	13
Deletion	Chr10	12290952	12290963	11
Deletion	Chr1	12446118	12446133	15	LOC_Os01g22150
Deletion	Chr9	12612967	12612968	1
Deletion	Chr2	12766001	12843000	76999	11
Deletion	Chr1	13967353	13967354	1
Deletion	Chr7	15091335	15091349	14
Deletion	Chr10	15254659	15254660	1
Deletion	Chr6	16161616	16161617	1
Deletion	Chr4	22510501	22510502	1
Deletion	Chr11	22722918	22723009	91
Deletion	Chr9	22867317	22867318	1
Deletion	Chr12	22891160	22891162	2
Deletion	Chr1	24750101	24750112	11
Deletion	Chr8	27138307	27138308	1
Deletion	Chr7	27362691	27362698	7
Deletion	Chr2	27388169	27388172	3	LOC_Os02g45150
Deletion	Chr4	28192090	28192094	4
Deletion	Chr7	28646980	28646983	3
Deletion	Chr4	30246420	30246424	4
Deletion	Chr2	30256809	30256811	2
Deletion	Chr6	30704414	30704416	2
Deletion	Chr1	33964290	33964291	1
Deletion	Chr1	36599907	36599913	6	LOC_Os01g63150
Deletion	Chr1	38869536	38869556	20

Insertions: 30

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	2216295	2216296	2
Insertion	Chr1	10729835	10729835	1
Insertion	Chr1	29698811	29698811	1
Insertion	Chr2	9676554	9676554	1
Insertion	Chr3	7298755	7298757	3
Insertion	Chr3	23394211	23394211	1
Insertion	Chr4	8051948	8051948	1
Insertion	Chr4	10337162	10337162	1
Insertion	Chr4	22669379	22669379	1
Insertion	Chr5	10149790	10149790	1
Insertion	Chr5	11553728	11553728	1
Insertion	Chr6	12547000	12547000	1
Insertion	Chr7	12157728	12157728	1
Insertion	Chr9	319609	319610	2
Insertion	Chr9	4874891	4874891	1
Insertion	Chr10	3607469	3607469	1
Insertion	Chr10	4653582	4653582	1
Insertion	Chr10	8214104	8214104	1
Insertion	Chr10	21062114	21062114	1
Insertion	Chr11	20814650	20814652	3
Insertion	Chr11	20864781	20864782	2
Insertion	Chr11	21129520	21129525	6
Insertion	Chr11	22204165	22204247	83
Insertion	Chr11	22782088	22782119	32
Insertion	Chr11	24286491	24286543	53
Insertion	Chr12	8548657	8548658	2
Insertion	Chr12	15291864	15291864	1
Insertion	Chr12	20377384	20377402	19
Insertion	Chr12	21483587	21483605	19
Insertion	Chr12	25737226	25737261	36

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	9149878	9251066
Inversion	Chr9	9149920	9251085

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	1640946	Chr6	4298291
Translocation	Chr12	2099745	Chr2	29749005
Translocation	Chr12	2100079	Chr11	11633032
Translocation	Chr9	6717110	Chr2	29749009
Translocation	Chr5	8349294	Chr1	10581590
Translocation	Chr11	11634520	Chr9	6717341
Translocation	Chr8	19434187	Chr6	494463
Translocation	Chr3	25459343	Chr2	34293880

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