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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20220161	G-T	HET	INTERGENIC
SBS	Chr1	42242731	A-T	HOMO	INTRON
SBS	Chr10	2027363	A-T	HOMO	INTRON
SBS	Chr10	2577869	G-C	HOMO	INTERGENIC
SBS	Chr11	11769047	G-A	HET	INTERGENIC
SBS	Chr12	8580138	G-A	HET	INTERGENIC
SBS	Chr12	8580139	G-A	HET	INTERGENIC
SBS	Chr2	19053396	T-A	HET	INTERGENIC
SBS	Chr2	31287287	C-T	HOMO	INTERGENIC
SBS	Chr2	31287292	C-T	HOMO	INTERGENIC
SBS	Chr2	32829940	C-T	HET	STOP_GAINED	LOC_Os02g53670
SBS	Chr3	19334859	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33850
SBS	Chr3	30231722	C-A	HOMO	INTRON
SBS	Chr3	32312070	G-A	HET	INTERGENIC
SBS	Chr3	8306710	T-A	HET	INTERGENIC
SBS	Chr4	11161	G-A	HET	INTRON
SBS	Chr4	11276116	A-G	HOMO	INTRON
SBS	Chr4	11315442	T-C	HOMO	INTERGENIC
SBS	Chr4	11762406	G-T	HOMO	INTERGENIC
SBS	Chr4	21001443	G-T	HOMO	INTERGENIC
SBS	Chr6	6051618	A-T	HET	INTERGENIC
SBS	Chr7	10423124	C-T	HET	INTERGENIC
SBS	Chr7	11702945	A-C	HET	INTERGENIC
SBS	Chr7	15037276	A-G	HET	INTERGENIC
SBS	Chr7	17070887	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g29160
SBS	Chr7	20922876	A-G	HOMO	INTERGENIC
SBS	Chr8	12142592	A-T	HOMO	INTRON
SBS	Chr8	22146025	T-G	HOMO	INTERGENIC
SBS	Chr9	20728418	A-G	HET	INTERGENIC
SBS	Chr9	20736075	A-T	HET	INTERGENIC
SBS	Chr9	20736076	A-T	HET	INTERGENIC
SBS	Chr9	22139014	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g38460
SBS	Chr9	22835000	C-T	HET	INTERGENIC
SBS	Chr9	4339880	G-T	HOMO	INTRON

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	133782	133783	1
Deletion	Chr4	161685	161687	2
Deletion	Chr12	2269355	2269364	9
Deletion	Chr4	2453589	2453594	5
Deletion	Chr4	7631491	7631492	1
Deletion	Chr9	8877001	8926000	48999	5
Deletion	Chr9	8929001	8977000	47999	4
Deletion	Chr4	10166401	10166404	3	LOC_Os04g18410
Deletion	Chr4	10383555	10383572	17
Deletion	Chr11	10507936	10507937	1	LOC_Os11g18620
Deletion	Chr6	12471155	12471194	39
Deletion	Chr9	14504962	14504967	5
Deletion	Chr3	15590401	15590421	20
Deletion	Chr4	16011404	16011411	7
Deletion	Chr4	17141828	17141829	1
Deletion	Chr12	18036999	18037090	91
Deletion	Chr5	18386840	18386846	6
Deletion	Chr1	18491074	18491075	1
Deletion	Chr10	18704607	18704608	1
Deletion	Chr2	20052263	20052266	3
Deletion	Chr3	20810654	20810655	1	LOC_Os03g37500
Deletion	Chr2	22703382	22703418	36	LOC_Os02g37620
Deletion	Chr8	23258540	23258541	1
Deletion	Chr4	24123260	24123265	5
Deletion	Chr2	31633991	31634005	14
Deletion	Chr2	32830517	32830529	12	LOC_Os02g53670
Deletion	Chr2	34343782	34343783	1	LOC_Os02g56110
Deletion	Chr1	38122405	38122410	5

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	6884165	6884166	2
Insertion	Chr2	33339524	33339531	8
Insertion	Chr2	6882883	6882884	2
Insertion	Chr7	2463118	2463118	1
Insertion	Chr8	13027238	13027239	2
Insertion	Chr8	24481449	24481487	39
Insertion	Chr9	8502861	8502862	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9658619	9674988	LOC_Os04g17640
Inversion	Chr7	20928560	20947499	LOC_Os07g34964
Inversion	Chr7	20928562	20947500	LOC_Os07g34964

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	22337468	Chr4	4257957	LOC_Os06g37700

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