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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20922489	G-A	HET	INTERGENIC
SBS	Chr1	34503483	A-G	HET	INTERGENIC
SBS	Chr10	6718858	G-A	HET	INTERGENIC
SBS	Chr11	19900654	T-C	HOMO	INTERGENIC
SBS	Chr11	7357254	C-T	HOMO	INTRON
SBS	Chr12	11079460	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19080
SBS	Chr2	32526714	A-T	HET	INTERGENIC
SBS	Chr3	151486	G-C	HOMO	INTERGENIC
SBS	Chr3	5756922	G-A	HET	INTERGENIC
SBS	Chr3	6519735	G-A	HET	INTRON
SBS	Chr4	10187718	A-G	HET	INTERGENIC
SBS	Chr4	11050726	T-C	HET	INTERGENIC
SBS	Chr4	16905081	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	20162424	C-T	HOMO	INTERGENIC
SBS	Chr4	8585048	T-A	HET	INTRON
SBS	Chr5	11528309	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19750
SBS	Chr5	22292504	A-G	HET	INTERGENIC
SBS	Chr5	29644413	T-C	HOMO	INTERGENIC
SBS	Chr5	7147399	A-T	HOMO	INTERGENIC
SBS	Chr5	9742950	A-G	HOMO	INTERGENIC
SBS	Chr6	19380419	G-A	HOMO	INTERGENIC
SBS	Chr7	28594227	T-A	HOMO	INTERGENIC
SBS	Chr8	12549627	A-C	HET	INTERGENIC
SBS	Chr8	12995774	T-C	HOMO	INTERGENIC
SBS	Chr8	4076042	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g07290
SBS	Chr8	4581844	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g08070

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1594378	1594379	1
Deletion	Chr10	2646246	2646247	1
Deletion	Chr10	3579736	3579737	1
Deletion	Chr11	4273268	4273287	19
Deletion	Chr11	4874381	4874388	7
Deletion	Chr7	6332101	6332190	89
Deletion	Chr8	6677660	6677661	1
Deletion	Chr1	6825383	6825393	10
Deletion	Chr5	7186005	7186011	6
Deletion	Chr5	7225887	7225906	19
Deletion	Chr11	7674446	7674454	8
Deletion	Chr12	8158223	8158224	1
Deletion	Chr3	12206509	12206510	1
Deletion	Chr5	12945564	12945565	1
Deletion	Chr7	14189955	14189956	1
Deletion	Chr12	16885741	16885769	28
Deletion	Chr3	21257416	21257417	1
Deletion	Chr11	22911851	22911857	6	LOC_Os11g38640
Deletion	Chr5	24701817	24701819	2
Deletion	Chr4	24904996	24905000	4
Deletion	Chr4	25596298	25596307	9
Deletion	Chr12	26832904	26832905	1	LOC_Os12g43230
Deletion	Chr7	26855238	26855239	1
Deletion	Chr3	27795430	27795529	99
Deletion	Chr2	31371048	31371049	1

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	16914490	16914524	35
Insertion	Chr1	8926302	8926302	1
Insertion	Chr10	3245048	3245048	1
Insertion	Chr10	4901798	4901800	3
Insertion	Chr10	8670969	8670969	1
Insertion	Chr10	87041	87138	98
Insertion	Chr11	12044926	12044979	54
Insertion	Chr11	20582229	20582263	35
Insertion	Chr12	11016854	11016854	1
Insertion	Chr2	14792958	14792998	41
Insertion	Chr4	18571970	18572053	84
Insertion	Chr4	725425	725491	67
Insertion	Chr5	10289090	10289090	1
Insertion	Chr5	27368678	27368689	12
Insertion	Chr6	1233526	1233527	2
Insertion	Chr7	11392750	11392750	1
Insertion	Chr7	23377254	23377254	1
Insertion	Chr7	28603125	28603125	1
Insertion	Chr8	24779573	24779574	2
Insertion	Chr8	3980778	3980778	1
Insertion	Chr8	6083709	6083709	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	24797483	24926351
Inversion	Chr4	24797499	24926355

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2321506	Chr4	12931320
Translocation	Chr6	9896753	Chr1	9951767
Translocation	Chr10	19384333	Chr6	10870015
Translocation	Chr6	20501793	Chr1	11600022	LOC_Os01g20820
Translocation	Chr7	20984972	Chr5	10173549	LOC_Os07g35030
Translocation	Chr3	24678380	Chr2	9608628
Translocation	Chr11	27420985	Chr7	17149932
Translocation	Chr4	33750280	Chr3	5010024

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