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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11671200	T-A	HOMO	INTERGENIC
SBS	Chr10	3860495	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g07310
SBS	Chr11	12328867	T-C	HET	INTERGENIC
SBS	Chr11	25201750	G-A	HOMO	INTRON
SBS	Chr11	778173	C-T	HET	INTERGENIC
SBS	Chr12	17991620	A-G	HOMO	INTERGENIC
SBS	Chr12	9138033	C-T	HOMO	INTERGENIC
SBS	Chr2	11218045	G-A	HET	INTERGENIC
SBS	Chr2	14386041	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	15438294	A-C	HET	INTERGENIC
SBS	Chr2	33854121	G-T	HET	INTERGENIC
SBS	Chr3	22196267	C-A	HET	INTERGENIC
SBS	Chr3	29906126	A-T	HOMO	INTRON
SBS	Chr3	35957212	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g63660
SBS	Chr3	9227849	T-A	HET	INTERGENIC
SBS	Chr5	24869300	G-T	HET	INTERGENIC
SBS	Chr6	11102491	G-A	HOMO	INTERGENIC
SBS	Chr6	19674917	T-C	HOMO	INTERGENIC
SBS	Chr7	15159569	G-A	HET	INTERGENIC
SBS	Chr7	17428925	T-G	HET	UTR_5_PRIME
SBS	Chr7	25595022	T-A	HET	INTERGENIC
SBS	Chr8	3429022	A-G	HOMO	INTERGENIC
SBS	Chr9	14040682	T-A	HOMO	INTERGENIC
SBS	Chr9	4076991	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5709653	G-C	HOMO	INTERGENIC

Deletions: 42

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	671963	671964	1
Deletion	Chr5	682412	682413	1
Deletion	Chr4	2857405	2857420	15
Deletion	Chr4	3365909	3365910	1
Deletion	Chr10	3386842	3386908	66
Deletion	Chr9	3912400	3912404	4
Deletion	Chr12	5600628	5600630	2
Deletion	Chr7	6156198	6156199	1	LOC_Os07g11160
Deletion	Chr7	7137963	7138056	93
Deletion	Chr9	8657453	8657463	10
Deletion	Chr7	8953033	8953035	2
Deletion	Chr11	9056342	9056346	4
Deletion	Chr9	9535477	9535480	3
Deletion	Chr11	10024566	10024568	2
Deletion	Chr10	10078741	10078749	8
Deletion	Chr4	11284132	11284133	1
Deletion	Chr9	11695318	11695322	4
Deletion	Chr12	12046496	12046497	1
Deletion	Chr7	12378597	12378683	86
Deletion	Chr9	13429247	13429261	14	LOC_Os09g22200
Deletion	Chr12	14098149	14098150	1
Deletion	Chr4	14135499	14135500	1	LOC_Os04g24610
Deletion	Chr12	14281355	14281406	51
Deletion	Chr9	14291940	14291941	1
Deletion	Chr2	14886599	14886600	1
Deletion	Chr3	16310097	16310098	1
Deletion	Chr12	16806525	16806526	1
Deletion	Chr4	17329863	17329864	1	LOC_Os04g29224
Deletion	Chr12	18033436	18033437	1	LOC_Os12g30100
Deletion	Chr2	19396931	19396932	1
Deletion	Chr6	20214162	20214164	2
Deletion	Chr3	20625462	20625467	5
Deletion	Chr2	21646019	21646020	1
Deletion	Chr8	22073984	22073985	1
Deletion	Chr6	24163428	24163434	6
Deletion	Chr1	24186310	24186321	11
Deletion	Chr12	24591182	24591186	4
Deletion	Chr6	25383954	25383955	1
Deletion	Chr3	32293001	32305000	11999
Deletion	Chr4	32893831	32893832	1
Deletion	Chr3	32937915	32937916	1
Deletion	Chr1	41589671	41589672	1

Insertions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	30210531	30210658	128
Insertion	Chr1	40128411	40128411	1
Insertion	Chr1	40423363	40423372	10
Insertion	Chr11	13603928	13603928	1
Insertion	Chr11	15578672	15578672	1
Insertion	Chr12	10306948	10306948	1
Insertion	Chr12	11336483	11336483	1
Insertion	Chr12	16787051	16787051	1
Insertion	Chr12	17949649	17949649	1
Insertion	Chr12	21069272	21069272	1
Insertion	Chr12	21539961	21539961	1
Insertion	Chr2	14923093	14923093	1
Insertion	Chr2	30554828	30554839	12	LOC_Os02g50000
Insertion	Chr3	14364831	14364831	1
Insertion	Chr3	2381430	2381433	4
Insertion	Chr3	27219007	27219007	1
Insertion	Chr3	30745197	30745272	76
Insertion	Chr4	11756552	11756552	1
Insertion	Chr4	2610506	2610506	1
Insertion	Chr4	8623757	8623757	1
Insertion	Chr5	15431998	15431998	1
Insertion	Chr6	10986230	10986230	1
Insertion	Chr6	16243273	16243273	1	LOC_Os06g28540
Insertion	Chr7	7930974	7930977	4
Insertion	Chr8	15935106	15935106	1
Insertion	Chr8	7317670	7317670	1
Insertion	Chr9	13032976	13032976	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	11968522	11987931
Inversion	Chr1	24799647	25092576

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8094083	Chr1	24799652
Translocation	Chr10	8094336	Chr1	25092576
Translocation	Chr10	11760185	Chr2	4884740
Translocation	Chr10	14869719	Chr6	16456233	LOC_Os10g28570
Translocation	Chr10	14869730	Chr6	16455877	LOC_Os10g28570
Translocation	Chr8	17268779	Chr4	4103749	LOC_Os08g28290
Translocation	Chr11	18176531	Chr6	10800616

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