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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	209818	C-A	HET	UTR_5_PRIME
SBS	Chr1	13033443	T-C	HET	INTERGENIC
SBS	Chr1	17336129	G-A	HET	STOP_GAINED	LOC_Os01g31670
SBS	Chr1	43140227	A-G	HOMO	INTERGENIC
SBS	Chr2	9680912	G-T	HET	INTERGENIC
SBS	Chr2	12308527	G-A	HET	INTERGENIC
SBS	Chr2	20809361	T-C	HOMO	INTERGENIC
SBS	Chr2	20810805	T-C	HOMO	INTERGENIC
SBS	Chr2	27100747	T-A	HET	INTERGENIC
SBS	Chr2	27910842	C-A	HET	INTRON
SBS	Chr3	869417	T-A	HET	INTERGENIC
SBS	Chr3	6642620	C-T	HET	INTERGENIC
SBS	Chr3	22558634	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	34079610	T-C	HOMO	INTERGENIC
SBS	Chr3	36145156	G-A	HET	INTERGENIC
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	18993354	T-C	HOMO	UTR_3_PRIME
SBS	Chr5	25153590	C-T	HET	INTERGENIC
SBS	Chr6	12936862	C-T	HOMO	INTERGENIC
SBS	Chr6	17185489	G-T	HOMO	INTERGENIC
SBS	Chr6	29862591	C-T	HOMO	INTERGENIC
SBS	Chr7	14138864	G-A	HET	INTERGENIC
SBS	Chr7	24284434	T-A	HET	INTERGENIC
SBS	Chr8	12809026	C-T	HET	INTRON
SBS	Chr9	10130026	T-A	HET	INTRON
SBS	Chr9	10193553	T-C	HET	INTERGENIC
SBS	Chr10	1348075	C-T	HOMO	INTRON
SBS	Chr10	16616086	G-A	HET	INTERGENIC
SBS	Chr10	21995691	C-T	HET	UTR_3_PRIME
SBS	Chr11	1790405	C-T	HET	INTRON
SBS	Chr11	21712988	A-G	HET	INTERGENIC
SBS	Chr11	24873086	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41460
SBS	Chr12	9974476	C-T	HET	INTERGENIC
SBS	Chr12	24235487	T-A	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	871584	871585	1
Deletion	Chr7	3561151	3561152	1
Deletion	Chr5	4005251	4005253	2
Deletion	Chr5	4523607	4523608	1
Deletion	Chr4	4849085	4849156	71
Deletion	Chr8	4900490	4900496	6
Deletion	Chr10	7846918	7846919	1	LOC_Os10g14990
Deletion	Chr7	8271598	8271605	7	LOC_Os07g14514
Deletion	Chr7	8521067	8521074	7
Deletion	Chr9	9055964	9055965	1	LOC_Os09g15020
Deletion	Chr1	9378552	9378553	1
Deletion	Chr6	10317569	10317571	2
Deletion	Chr1	10794507	10794543	36
Deletion	Chr8	10957962	10957974	12
Deletion	Chr7	11816198	11816199	1
Deletion	Chr8	11836200	11836201	1
Deletion	Chr6	12690409	12690410	1
Deletion	Chr9	15874001	15896000	21999	4
Deletion	Chr4	20306625	20306627	2
Deletion	Chr1	22319114	22319115	1	LOC_Os01g39570
Deletion	Chr7	26355978	26355979	1
Deletion	Chr5	26819791	26819802	11
Deletion	Chr6	27131461	27131462	1
Deletion	Chr4	27407080	27407084	4
Deletion	Chr5	29955720	29955721	1
Deletion	Chr1	32550727	32550729	2
Deletion	Chr1	35377890	35377897	7
Deletion	Chr1	36869274	36869279	5

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	15634727	15634732	6
Insertion	Chr2	11611663	11611663	1
Insertion	Chr3	3669986	3669987	2
Insertion	Chr3	10130255	10130371	117
Insertion	Chr3	13372325	13372325	1
Insertion	Chr3	18343568	18343571	4
Insertion	Chr4	11985397	11985397	1
Insertion	Chr5	20461582	20461587	6
Insertion	Chr6	21789993	21789993	1
Insertion	Chr8	10714504	10714505	2
Insertion	Chr8	19339992	19339995	4
Insertion	Chr9	7692865	7692865	1
Insertion	Chr10	9023677	9023679	3
Insertion	Chr11	7559858	7559863	6
Insertion	Chr12	12985098	12985098	1
Insertion	Chr12	20254484	20254485	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23933650	24280568	LOC_Os07g39910
Inversion	Chr7	23933692	24280653	LOC_Os07g39910
Inversion	Chr2	33227152	33227454	LOC_Os02g54200

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5549401	Chr3	31963077
Translocation	Chr10	20534963	Chr9	7256735

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