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Mutant Information

Mutant NameFN3014-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3014-S Alignment File
Seed AvailabilityNo
Mapping
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Variant Information

Single base substitutions: 43
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr1012768902T-AHETNON_SYNONYMOUS_CODINGLOC_Os10g24820
SBSChr1012768903C-AHETNON_SYNONYMOUS_CODINGLOC_Os10g24820
SBSChr1019823096C-THOMOINTERGENIC
SBSChr1020498529G-AHOMOSYNONYMOUS_CODING
SBSChr1020894606G-AHOMOINTRON
SBSChr106693459G-CHETINTERGENIC
SBSChr109032992T-CHETSYNONYMOUS_CODING
SBSChr109092674T-AHETINTRON
SBSChr1123684821C-THOMOINTERGENIC
SBSChr1125603599C-AHOMOINTERGENIC
SBSChr1125603601A-GHOMOINTERGENIC
SBSChr11511626A-THETINTERGENIC
SBSChr1221242254T-CHOMOINTRON
SBSChr221798132C-THETNON_SYNONYMOUS_CODINGLOC_Os02g36170
SBSChr28199737G-AHETUTR_3_PRIME
SBSChr313118986G-CHOMOINTERGENIC
SBSChr313118987T-CHOMOINTERGENIC
SBSChr313683272T-GHOMOINTERGENIC
SBSChr319677203A-THOMOINTERGENIC
SBSChr323555785C-THOMONON_SYNONYMOUS_CODINGLOC_Os03g42334
SBSChr333324479G-AHOMOSYNONYMOUS_CODING
SBSChr36558600A-GHETINTRON
SBSChr412316287G-AHETINTERGENIC
SBSChr427024180C-THOMOINTERGENIC
SBSChr46179922T-GHETNON_SYNONYMOUS_CODINGLOC_Os04g11320
SBSChr47120075A-GHETINTRON
SBSChr49032767T-AHETNON_SYNONYMOUS_CODINGLOC_Os04g16600
SBSChr49045297T-CHETNON_SYNONYMOUS_CODINGLOC_Os04g16630
SBSChr510606781G-AHOMOINTERGENIC
SBSChr513403153T-CHOMOINTERGENIC
SBSChr57787474G-CHOMOINTERGENIC
SBSChr610828331C-THETSYNONYMOUS_CODING
SBSChr710416654G-THETNON_SYNONYMOUS_CODINGLOC_Os07g17630
SBSChr720129219T-CHETINTERGENIC
SBSChr720724675G-THETNON_SYNONYMOUS_CODINGLOC_Os07g34570
SBSChr721961296C-THOMOINTERGENIC
SBSChr728532868A-THOMOINTERGENIC
SBSChr74836354G-AHETINTERGENIC
SBSChr76368225C-GHETINTERGENIC
SBSChr818579837T-CHOMOINTERGENIC
SBSChr911551215C-THETNON_SYNONYMOUS_CODINGLOC_Os09g19300
SBSChr918267077G-AHOMOSYNONYMOUS_CODING
SBSChr93227688C-THETINTERGENIC

Deletions: 213
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr1210381510382712LOC_Os12g01180
DeletionChr6105001120000149994
DeletionChr137629137630413
DeletionChr125780165780182LOC_Os12g01970
DeletionChr10593001606000129993
DeletionChr9607001621000139992
DeletionChr12739001762000229992
DeletionChr1112010011223000219993
DeletionChr414340011455000209995
DeletionChr414850011497000119992
DeletionChr12160043716004381
DeletionChr416270011649000219994
DeletionChr417920011809000169995
DeletionChr82061001207000089993
DeletionChr922030012220000169993
DeletionChr82246001226200015999LOC_Os08g04540
DeletionChr423830012397000139992
DeletionChr9276818427681862
DeletionChr3285270528527127LOC_Os03g05730
DeletionChr1231300013148000179992
DeletionChr1032920013307000149993
DeletionChr233140013327000129992
DeletionChr1036380013664000259994
DeletionChr93754024375403915
DeletionChr1398500139940008999LOC_Os01g08560
DeletionChr942370014254000169992
DeletionChr94315001432500099992
DeletionChr10440700144150007999
DeletionChr844860014500000139992
DeletionChr114528001454000011999LOC_Os11g08569
DeletionChr545320014550000179995
DeletionChr10468300147350005199911
DeletionChr947600014795000349995
DeletionChr449810015011000299994
DeletionChr451880015206000179995
DeletionChr1156790015697000179993
DeletionChr458160015854000379997
DeletionChr761620016173000109994
DeletionChr1062870016316000289994
DeletionChr5645550664555137
DeletionChr765030016529000259994
DeletionChr365440016559000149993
DeletionChr565500016574000239993
DeletionChr366380016654000159993
DeletionChr2705697170569743LOC_Os02g13250
DeletionChr870630017088000249992
DeletionChr572400017256000159993
DeletionChr776290017642000129993
DeletionChr77847001785600089992
DeletionChr578650017891000259994
DeletionChr1080710018088000169992
DeletionChr780940018108000139995
DeletionChr1281110018145000339994
DeletionChr48148001815900010999LOC_Os04g14840
DeletionChr1184780018505000269994
DeletionChr785950018616000209995
DeletionChr487760018810000339996
DeletionChr4885552088555288
DeletionChr590070019033000259994
DeletionChr691150019133000179993
DeletionChr99120001913500014999LOC_Os09g15120
DeletionChr991680019191000229993
DeletionChr592020019217000149992
DeletionChr129218001922900010999LOC_Os12g16150
DeletionChr59517001953300015999LOC_Os05g17010
DeletionChr1196560019669000129992
DeletionChr1197080019725000169994
DeletionChr597100019744000339994
DeletionChr1298930019909000159993
DeletionChr410012703100127052
DeletionChr210074660100746611
DeletionChr41058600110607000209993
DeletionChr510738138107381402
DeletionChr41086500110877000119994
DeletionChr111090200110914000119993
DeletionChr21126600111283000169993
DeletionChr111130600111331000249996
DeletionChr111141700111434000169993
DeletionChr1011609555116095572
DeletionChr81161200111634000219994
DeletionChr91171600111729000129994
DeletionChr11171700111732000149993
DeletionChr121176200111794000319994
DeletionChr51179100111802000109992
DeletionChr21183300111855000219994
DeletionChr61184000111858000179994
DeletionChr121187700111895000179994
DeletionChr5119040011201100010699916
DeletionChr41206800112100000319995
DeletionChr121217200112183000109993
DeletionChr121223900112257000179992
DeletionChr112679038126790391
DeletionChr1126870011282300013599921
DeletionChr21276800112782000139993
DeletionChr31286900112891000219993
DeletionChr712946010129460188
DeletionChr113065775130657838
DeletionChr11321800113230000119994
DeletionChr113252464132524651
DeletionChr41325800113296000379996
DeletionChr91331900113341000219994
DeletionChr91339300113406000129994
DeletionChr111342100113454000329994
DeletionChr11135400011354900089992
DeletionChr71359500113616000209994
DeletionChr1213635001136440008999LOC_Os12g24680
DeletionChr81367400113691000169994
DeletionChr41411500114129000139992
DeletionChr61412500114154000289994
DeletionChr121413100114162000309993
DeletionChr101415400114170000159992
DeletionChr6144290011444200012999
DeletionChr71466800114700000319995
DeletionChr21469800114731000329994
DeletionChr71498600115000000139992
DeletionChr5154325851543260621
DeletionChr6154975111549752413
DeletionChr51551000115541000309999
DeletionChr51578400115796000119992
DeletionChr81579400115810000159993
DeletionChr11158351141583514430
DeletionChr11592400115952000279994
DeletionChr2159270011594700019999LOC_Os02g27110
DeletionChr41594100115986000449995
DeletionChr31627500116296000209993
DeletionChr121633100116380000489999
DeletionChr216431073164310796
DeletionChr216499225164992261
DeletionChr7165780011658900010999LOC_Os07g28960
DeletionChr31660900116626000169995
DeletionChr121670900116725000159992
DeletionChr41698900117005000159992
DeletionChr31714700117170000229993
DeletionChr61731100117336000249993
DeletionChr31731300117326000129993
DeletionChr11736000117390000299994
DeletionChr51740900117426000169992
DeletionChr21764000117665000249994
DeletionChr81777800117804000259996
DeletionChr10178220011784600023999LOC_Os10g33750
DeletionChr31785600117875000189993
DeletionChr3180700011807900089992
DeletionChr81810700118123000159994
DeletionChr11826900118285000159993
DeletionChr41828000118296000159992
DeletionChr11836400118378000139993
DeletionChr81865300118673000199993
DeletionChr31900000119051000509998
DeletionChr5192650011927900013999LOC_Os05g33330
DeletionChr919312171193121732
DeletionChr31933100119354000229998
DeletionChr11941000119441000309996
DeletionChr51954600119580000339992
DeletionChr121955300119576000229993
DeletionChr11969900119719000199994
DeletionChr2198130011982700013999LOC_Os02g33490
DeletionChr11199140011992700012999LOC_Os11g34305
DeletionChr12019200120235000429996
DeletionChr11208430012085400010999LOC_Os11g35650
DeletionChr112092400120940000159992
DeletionChr112108700121115000279994
DeletionChr32113000121143000129993
DeletionChr22119200121223000309992
DeletionChr112135000121371000209992
DeletionChr82136800121391000229993
DeletionChr122173700121759000219992
DeletionChr32186600121882000159995
DeletionChr22211300122141000279996
DeletionChr92244800122496000479997
DeletionChr8225938742259390733
DeletionChr72268300122711000279995
DeletionChr82311900123149000299995
DeletionChr12325800123276000179994
DeletionChr3233053072330531710
DeletionChr22365400123682000279995
DeletionChr52370300123718000149993
DeletionChr112378200123796000139992
DeletionChr32395300123965000119994
DeletionChr112412500124137000119992
DeletionChr122442700124449000219993
DeletionChr12245670012457800010999LOC_Os12g40210
DeletionChr112466700124687000199992
DeletionChr82473300124756000229994
DeletionChr112475100124769000179993
DeletionChr224799105247991061
DeletionChr524801805248018105
DeletionChr52520200125214000119992
DeletionChr82576200125780000179996
DeletionChr52610500126124000189993
DeletionChr826259092262590942
DeletionChr11265880012660000011999LOC_Os11g44050
DeletionChr72688700126904000169993
DeletionChr7273730012738300099992
DeletionChr22788100127906000249994
DeletionChr5284671582846716810
DeletionChr12939900129414000149992
DeletionChr22995600129977000209993
DeletionChr33013300130151000179996
DeletionChr230855496308555048LOC_Os02g50530
DeletionChr23094300130967000239994
DeletionChr631029314310293228
DeletionChr33221900132233000139993
DeletionChr43224500132259000139993
DeletionChr13286200132875000129992
DeletionChr333278815332788161
DeletionChr13423300134246000129992
DeletionChr33436200134387000249995
DeletionChr43476600134782000159995
DeletionChr134787247347872481
DeletionChr1356300013564400013999LOC_Os01g61980
DeletionChr23590200135924000219993
DeletionChr33604600136063000169992
DeletionChr136452621364526243

Insertions: 22
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr125727533257275342
InsertionChr13397373397371
InsertionChr1490913149091344
InsertionChr10166072431660725614
InsertionChr1213462604134626041
InsertionChr211920872119208743
InsertionChr217648765176487684
InsertionChr2676705267670521
InsertionChr319033119190331191LOC_Os03g33270image
InsertionChr4125291591252916810
InsertionChr426456788264567903
InsertionChr519407613194076142
InsertionChr5204681632046817210
InsertionChr5512997051299756
InsertionChr5948499694849961
InsertionChr725737648257376514
InsertionChr817915418179154181
InsertionChr8202269402022700768
InsertionChr820522199205221991
InsertionChr9110410531104107826
InsertionChr94898974489903966
InsertionChr95177773517778210

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr12143367535512
InversionChr12143382535515
InversionChr41512320515168442LOC_Os04g25990
InversionChr122091014821304478LOC_Os12g35000
InversionChr122091015821304510LOC_Os12g35000

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr106618993Chr6134574122
TranslocationChr813778155Chr512302080LOC_Os08g22910
TranslocationChr320535249Chr114983481LOC_Os01g26400
TranslocationChr921806557Chr56399594