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Mutant Information |
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Mutant Name | FN3014-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3014-S Alignment File |
Seed Availability | No |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 43
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr10 | 12768902 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24820 |
SBS | Chr10 | 12768903 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24820 |
SBS | Chr10 | 19823096 | C-T | HOMO | INTERGENIC | |
SBS | Chr10 | 20498529 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr10 | 20894606 | G-A | HOMO | INTRON | |
SBS | Chr10 | 6693459 | G-C | HET | INTERGENIC | |
SBS | Chr10 | 9032992 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr10 | 9092674 | T-A | HET | INTRON | |
SBS | Chr11 | 23684821 | C-T | HOMO | INTERGENIC | |
SBS | Chr11 | 25603599 | C-A | HOMO | INTERGENIC | |
SBS | Chr11 | 25603601 | A-G | HOMO | INTERGENIC | |
SBS | Chr11 | 511626 | A-T | HET | INTERGENIC | |
SBS | Chr12 | 21242254 | T-C | HOMO | INTRON | |
SBS | Chr2 | 21798132 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g36170 |
SBS | Chr2 | 8199737 | G-A | HET | UTR_3_PRIME | |
SBS | Chr3 | 13118986 | G-C | HOMO | INTERGENIC | |
SBS | Chr3 | 13118987 | T-C | HOMO | INTERGENIC | |
SBS | Chr3 | 13683272 | T-G | HOMO | INTERGENIC | |
SBS | Chr3 | 19677203 | A-T | HOMO | INTERGENIC | |
SBS | Chr3 | 23555785 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g42334 |
SBS | Chr3 | 33324479 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr3 | 6558600 | A-G | HET | INTRON | |
SBS | Chr4 | 12316287 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 27024180 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 6179922 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g11320 |
SBS | Chr4 | 7120075 | A-G | HET | INTRON | |
SBS | Chr4 | 9032767 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g16600 |
SBS | Chr4 | 9045297 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g16630 |
SBS | Chr5 | 10606781 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 13403153 | T-C | HOMO | INTERGENIC | |
SBS | Chr5 | 7787474 | G-C | HOMO | INTERGENIC | |
SBS | Chr6 | 10828331 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr7 | 10416654 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g17630 |
SBS | Chr7 | 20129219 | T-C | HET | INTERGENIC | |
SBS | Chr7 | 20724675 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g34570 |
SBS | Chr7 | 21961296 | C-T | HOMO | INTERGENIC | |
SBS | Chr7 | 28532868 | A-T | HOMO | INTERGENIC | |
SBS | Chr7 | 4836354 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 6368225 | C-G | HET | INTERGENIC | |
SBS | Chr8 | 18579837 | T-C | HOMO | INTERGENIC | |
SBS | Chr9 | 11551215 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g19300 |
SBS | Chr9 | 18267077 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr9 | 3227688 | C-T | HET | INTERGENIC |
Deletions: 213
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 103815 | 103827 | 12 | LOC_Os12g01180 |
Deletion | Chr6 | 105001 | 120000 | 14999 | 4 |
Deletion | Chr1 | 376291 | 376304 | 13 | |
Deletion | Chr12 | 578016 | 578018 | 2 | LOC_Os12g01970 |
Deletion | Chr10 | 593001 | 606000 | 12999 | 3 |
Deletion | Chr9 | 607001 | 621000 | 13999 | 2 |
Deletion | Chr12 | 739001 | 762000 | 22999 | 2 |
Deletion | Chr11 | 1201001 | 1223000 | 21999 | 3 |
Deletion | Chr4 | 1434001 | 1455000 | 20999 | 5 |
Deletion | Chr4 | 1485001 | 1497000 | 11999 | 2 |
Deletion | Chr12 | 1600437 | 1600438 | 1 | |
Deletion | Chr4 | 1627001 | 1649000 | 21999 | 4 |
Deletion | Chr4 | 1792001 | 1809000 | 16999 | 5 |
Deletion | Chr8 | 2061001 | 2070000 | 8999 | 3 |
Deletion | Chr9 | 2203001 | 2220000 | 16999 | 3 |
Deletion | Chr8 | 2246001 | 2262000 | 15999 | LOC_Os08g04540 |
Deletion | Chr4 | 2383001 | 2397000 | 13999 | 2 |
Deletion | Chr9 | 2768184 | 2768186 | 2 | |
Deletion | Chr3 | 2852705 | 2852712 | 7 | LOC_Os03g05730 |
Deletion | Chr12 | 3130001 | 3148000 | 17999 | 2 |
Deletion | Chr10 | 3292001 | 3307000 | 14999 | 3 |
Deletion | Chr2 | 3314001 | 3327000 | 12999 | 2 |
Deletion | Chr10 | 3638001 | 3664000 | 25999 | 4 |
Deletion | Chr9 | 3754024 | 3754039 | 15 | |
Deletion | Chr1 | 3985001 | 3994000 | 8999 | LOC_Os01g08560 |
Deletion | Chr9 | 4237001 | 4254000 | 16999 | 2 |
Deletion | Chr9 | 4315001 | 4325000 | 9999 | 2 |
Deletion | Chr10 | 4407001 | 4415000 | 7999 | |
Deletion | Chr8 | 4486001 | 4500000 | 13999 | 2 |
Deletion | Chr11 | 4528001 | 4540000 | 11999 | LOC_Os11g08569 |
Deletion | Chr5 | 4532001 | 4550000 | 17999 | 5 |
Deletion | Chr10 | 4683001 | 4735000 | 51999 | 11 |
Deletion | Chr9 | 4760001 | 4795000 | 34999 | 5 |
Deletion | Chr4 | 4981001 | 5011000 | 29999 | 4 |
Deletion | Chr4 | 5188001 | 5206000 | 17999 | 5 |
Deletion | Chr11 | 5679001 | 5697000 | 17999 | 3 |
Deletion | Chr4 | 5816001 | 5854000 | 37999 | 7 |
Deletion | Chr7 | 6162001 | 6173000 | 10999 | 4 |
Deletion | Chr10 | 6287001 | 6316000 | 28999 | 4 |
Deletion | Chr5 | 6455506 | 6455513 | 7 | |
Deletion | Chr7 | 6503001 | 6529000 | 25999 | 4 |
Deletion | Chr3 | 6544001 | 6559000 | 14999 | 3 |
Deletion | Chr5 | 6550001 | 6574000 | 23999 | 3 |
Deletion | Chr3 | 6638001 | 6654000 | 15999 | 3 |
Deletion | Chr2 | 7056971 | 7056974 | 3 | LOC_Os02g13250 |
Deletion | Chr8 | 7063001 | 7088000 | 24999 | 2 |
Deletion | Chr5 | 7240001 | 7256000 | 15999 | 3 |
Deletion | Chr7 | 7629001 | 7642000 | 12999 | 3 |
Deletion | Chr7 | 7847001 | 7856000 | 8999 | 2 |
Deletion | Chr5 | 7865001 | 7891000 | 25999 | 4 |
Deletion | Chr10 | 8071001 | 8088000 | 16999 | 2 |
Deletion | Chr7 | 8094001 | 8108000 | 13999 | 5 |
Deletion | Chr12 | 8111001 | 8145000 | 33999 | 4 |
Deletion | Chr4 | 8148001 | 8159000 | 10999 | LOC_Os04g14840 |
Deletion | Chr11 | 8478001 | 8505000 | 26999 | 4 |
Deletion | Chr7 | 8595001 | 8616000 | 20999 | 5 |
Deletion | Chr4 | 8776001 | 8810000 | 33999 | 6 |
Deletion | Chr4 | 8855520 | 8855528 | 8 | |
Deletion | Chr5 | 9007001 | 9033000 | 25999 | 4 |
Deletion | Chr6 | 9115001 | 9133000 | 17999 | 3 |
Deletion | Chr9 | 9120001 | 9135000 | 14999 | LOC_Os09g15120 |
Deletion | Chr9 | 9168001 | 9191000 | 22999 | 3 |
Deletion | Chr5 | 9202001 | 9217000 | 14999 | 2 |
Deletion | Chr12 | 9218001 | 9229000 | 10999 | LOC_Os12g16150 |
Deletion | Chr5 | 9517001 | 9533000 | 15999 | LOC_Os05g17010 |
Deletion | Chr11 | 9656001 | 9669000 | 12999 | 2 |
Deletion | Chr11 | 9708001 | 9725000 | 16999 | 4 |
Deletion | Chr5 | 9710001 | 9744000 | 33999 | 4 |
Deletion | Chr12 | 9893001 | 9909000 | 15999 | 3 |
Deletion | Chr4 | 10012703 | 10012705 | 2 | |
Deletion | Chr2 | 10074660 | 10074661 | 1 | |
Deletion | Chr4 | 10586001 | 10607000 | 20999 | 3 |
Deletion | Chr5 | 10738138 | 10738140 | 2 | |
Deletion | Chr4 | 10865001 | 10877000 | 11999 | 4 |
Deletion | Chr11 | 10902001 | 10914000 | 11999 | 3 |
Deletion | Chr2 | 11266001 | 11283000 | 16999 | 3 |
Deletion | Chr11 | 11306001 | 11331000 | 24999 | 6 |
Deletion | Chr11 | 11417001 | 11434000 | 16999 | 3 |
Deletion | Chr10 | 11609555 | 11609557 | 2 | |
Deletion | Chr8 | 11612001 | 11634000 | 21999 | 4 |
Deletion | Chr9 | 11716001 | 11729000 | 12999 | 4 |
Deletion | Chr1 | 11717001 | 11732000 | 14999 | 3 |
Deletion | Chr12 | 11762001 | 11794000 | 31999 | 4 |
Deletion | Chr5 | 11791001 | 11802000 | 10999 | 2 |
Deletion | Chr2 | 11833001 | 11855000 | 21999 | 4 |
Deletion | Chr6 | 11840001 | 11858000 | 17999 | 4 |
Deletion | Chr12 | 11877001 | 11895000 | 17999 | 4 |
Deletion | Chr5 | 11904001 | 12011000 | 106999 | 16 |
Deletion | Chr4 | 12068001 | 12100000 | 31999 | 5 |
Deletion | Chr12 | 12172001 | 12183000 | 10999 | 3 |
Deletion | Chr12 | 12239001 | 12257000 | 17999 | 2 |
Deletion | Chr1 | 12679038 | 12679039 | 1 | |
Deletion | Chr1 | 12687001 | 12823000 | 135999 | 21 |
Deletion | Chr2 | 12768001 | 12782000 | 13999 | 3 |
Deletion | Chr3 | 12869001 | 12891000 | 21999 | 3 |
Deletion | Chr7 | 12946010 | 12946018 | 8 | |
Deletion | Chr1 | 13065775 | 13065783 | 8 | |
Deletion | Chr1 | 13218001 | 13230000 | 11999 | 4 |
Deletion | Chr1 | 13252464 | 13252465 | 1 | |
Deletion | Chr4 | 13258001 | 13296000 | 37999 | 6 |
Deletion | Chr9 | 13319001 | 13341000 | 21999 | 4 |
Deletion | Chr9 | 13393001 | 13406000 | 12999 | 4 |
Deletion | Chr11 | 13421001 | 13454000 | 32999 | 4 |
Deletion | Chr11 | 13540001 | 13549000 | 8999 | 2 |
Deletion | Chr7 | 13595001 | 13616000 | 20999 | 4 |
Deletion | Chr12 | 13635001 | 13644000 | 8999 | LOC_Os12g24680 |
Deletion | Chr8 | 13674001 | 13691000 | 16999 | 4 |
Deletion | Chr4 | 14115001 | 14129000 | 13999 | 2 |
Deletion | Chr6 | 14125001 | 14154000 | 28999 | 4 |
Deletion | Chr12 | 14131001 | 14162000 | 30999 | 3 |
Deletion | Chr10 | 14154001 | 14170000 | 15999 | 2 |
Deletion | Chr6 | 14429001 | 14442000 | 12999 | |
Deletion | Chr7 | 14668001 | 14700000 | 31999 | 5 |
Deletion | Chr2 | 14698001 | 14731000 | 32999 | 4 |
Deletion | Chr7 | 14986001 | 15000000 | 13999 | 2 |
Deletion | Chr5 | 15432585 | 15432606 | 21 | |
Deletion | Chr6 | 15497511 | 15497524 | 13 | |
Deletion | Chr5 | 15510001 | 15541000 | 30999 | 9 |
Deletion | Chr5 | 15784001 | 15796000 | 11999 | 2 |
Deletion | Chr8 | 15794001 | 15810000 | 15999 | 3 |
Deletion | Chr11 | 15835114 | 15835144 | 30 | |
Deletion | Chr1 | 15924001 | 15952000 | 27999 | 4 |
Deletion | Chr2 | 15927001 | 15947000 | 19999 | LOC_Os02g27110 |
Deletion | Chr4 | 15941001 | 15986000 | 44999 | 5 |
Deletion | Chr3 | 16275001 | 16296000 | 20999 | 3 |
Deletion | Chr12 | 16331001 | 16380000 | 48999 | 9 |
Deletion | Chr2 | 16431073 | 16431079 | 6 | |
Deletion | Chr2 | 16499225 | 16499226 | 1 | |
Deletion | Chr7 | 16578001 | 16589000 | 10999 | LOC_Os07g28960 |
Deletion | Chr3 | 16609001 | 16626000 | 16999 | 5 |
Deletion | Chr12 | 16709001 | 16725000 | 15999 | 2 |
Deletion | Chr4 | 16989001 | 17005000 | 15999 | 2 |
Deletion | Chr3 | 17147001 | 17170000 | 22999 | 3 |
Deletion | Chr6 | 17311001 | 17336000 | 24999 | 3 |
Deletion | Chr3 | 17313001 | 17326000 | 12999 | 3 |
Deletion | Chr1 | 17360001 | 17390000 | 29999 | 4 |
Deletion | Chr5 | 17409001 | 17426000 | 16999 | 2 |
Deletion | Chr2 | 17640001 | 17665000 | 24999 | 4 |
Deletion | Chr8 | 17778001 | 17804000 | 25999 | 6 |
Deletion | Chr10 | 17822001 | 17846000 | 23999 | LOC_Os10g33750 |
Deletion | Chr3 | 17856001 | 17875000 | 18999 | 3 |
Deletion | Chr3 | 18070001 | 18079000 | 8999 | 2 |
Deletion | Chr8 | 18107001 | 18123000 | 15999 | 4 |
Deletion | Chr1 | 18269001 | 18285000 | 15999 | 3 |
Deletion | Chr4 | 18280001 | 18296000 | 15999 | 2 |
Deletion | Chr1 | 18364001 | 18378000 | 13999 | 3 |
Deletion | Chr8 | 18653001 | 18673000 | 19999 | 3 |
Deletion | Chr3 | 19000001 | 19051000 | 50999 | 8 |
Deletion | Chr5 | 19265001 | 19279000 | 13999 | LOC_Os05g33330 |
Deletion | Chr9 | 19312171 | 19312173 | 2 | |
Deletion | Chr3 | 19331001 | 19354000 | 22999 | 8 |
Deletion | Chr1 | 19410001 | 19441000 | 30999 | 6 |
Deletion | Chr5 | 19546001 | 19580000 | 33999 | 2 |
Deletion | Chr12 | 19553001 | 19576000 | 22999 | 3 |
Deletion | Chr1 | 19699001 | 19719000 | 19999 | 4 |
Deletion | Chr2 | 19813001 | 19827000 | 13999 | LOC_Os02g33490 |
Deletion | Chr11 | 19914001 | 19927000 | 12999 | LOC_Os11g34305 |
Deletion | Chr1 | 20192001 | 20235000 | 42999 | 6 |
Deletion | Chr11 | 20843001 | 20854000 | 10999 | LOC_Os11g35650 |
Deletion | Chr11 | 20924001 | 20940000 | 15999 | 2 |
Deletion | Chr11 | 21087001 | 21115000 | 27999 | 4 |
Deletion | Chr3 | 21130001 | 21143000 | 12999 | 3 |
Deletion | Chr2 | 21192001 | 21223000 | 30999 | 2 |
Deletion | Chr11 | 21350001 | 21371000 | 20999 | 2 |
Deletion | Chr8 | 21368001 | 21391000 | 22999 | 3 |
Deletion | Chr12 | 21737001 | 21759000 | 21999 | 2 |
Deletion | Chr3 | 21866001 | 21882000 | 15999 | 5 |
Deletion | Chr2 | 22113001 | 22141000 | 27999 | 6 |
Deletion | Chr9 | 22448001 | 22496000 | 47999 | 7 |
Deletion | Chr8 | 22593874 | 22593907 | 33 | |
Deletion | Chr7 | 22683001 | 22711000 | 27999 | 5 |
Deletion | Chr8 | 23119001 | 23149000 | 29999 | 5 |
Deletion | Chr1 | 23258001 | 23276000 | 17999 | 4 |
Deletion | Chr3 | 23305307 | 23305317 | 10 | |
Deletion | Chr2 | 23654001 | 23682000 | 27999 | 5 |
Deletion | Chr5 | 23703001 | 23718000 | 14999 | 3 |
Deletion | Chr11 | 23782001 | 23796000 | 13999 | 2 |
Deletion | Chr3 | 23953001 | 23965000 | 11999 | 4 |
Deletion | Chr11 | 24125001 | 24137000 | 11999 | 2 |
Deletion | Chr12 | 24427001 | 24449000 | 21999 | 3 |
Deletion | Chr12 | 24567001 | 24578000 | 10999 | LOC_Os12g40210 |
Deletion | Chr11 | 24667001 | 24687000 | 19999 | 2 |
Deletion | Chr8 | 24733001 | 24756000 | 22999 | 4 |
Deletion | Chr11 | 24751001 | 24769000 | 17999 | 3 |
Deletion | Chr2 | 24799105 | 24799106 | 1 | |
Deletion | Chr5 | 24801805 | 24801810 | 5 | |
Deletion | Chr5 | 25202001 | 25214000 | 11999 | 2 |
Deletion | Chr8 | 25762001 | 25780000 | 17999 | 6 |
Deletion | Chr5 | 26105001 | 26124000 | 18999 | 3 |
Deletion | Chr8 | 26259092 | 26259094 | 2 | |
Deletion | Chr11 | 26588001 | 26600000 | 11999 | LOC_Os11g44050 |
Deletion | Chr7 | 26887001 | 26904000 | 16999 | 3 |
Deletion | Chr7 | 27373001 | 27383000 | 9999 | 2 |
Deletion | Chr2 | 27881001 | 27906000 | 24999 | 4 |
Deletion | Chr5 | 28467158 | 28467168 | 10 | |
Deletion | Chr1 | 29399001 | 29414000 | 14999 | 2 |
Deletion | Chr2 | 29956001 | 29977000 | 20999 | 3 |
Deletion | Chr3 | 30133001 | 30151000 | 17999 | 6 |
Deletion | Chr2 | 30855496 | 30855504 | 8 | LOC_Os02g50530 |
Deletion | Chr2 | 30943001 | 30967000 | 23999 | 4 |
Deletion | Chr6 | 31029314 | 31029322 | 8 | |
Deletion | Chr3 | 32219001 | 32233000 | 13999 | 3 |
Deletion | Chr4 | 32245001 | 32259000 | 13999 | 3 |
Deletion | Chr1 | 32862001 | 32875000 | 12999 | 2 |
Deletion | Chr3 | 33278815 | 33278816 | 1 | |
Deletion | Chr1 | 34233001 | 34246000 | 12999 | 2 |
Deletion | Chr3 | 34362001 | 34387000 | 24999 | 5 |
Deletion | Chr4 | 34766001 | 34782000 | 15999 | 5 |
Deletion | Chr1 | 34787247 | 34787248 | 1 | |
Deletion | Chr1 | 35630001 | 35644000 | 13999 | LOC_Os01g61980 |
Deletion | Chr2 | 35902001 | 35924000 | 21999 | 3 |
Deletion | Chr3 | 36046001 | 36063000 | 16999 | 2 |
Deletion | Chr1 | 36452621 | 36452624 | 3 |
Insertions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 25727533 | 25727534 | 2 | |
Insertion | Chr1 | 339737 | 339737 | 1 | |
Insertion | Chr1 | 4909131 | 4909134 | 4 | |
Insertion | Chr10 | 16607243 | 16607256 | 14 | |
Insertion | Chr12 | 13462604 | 13462604 | 1 | |
Insertion | Chr2 | 11920872 | 11920874 | 3 | |
Insertion | Chr2 | 17648765 | 17648768 | 4 | |
Insertion | Chr2 | 6767052 | 6767052 | 1 | |
Insertion | Chr3 | 19033119 | 19033119 | 1 | LOC_Os03g33270![]() |
Insertion | Chr4 | 12529159 | 12529168 | 10 | |
Insertion | Chr4 | 26456788 | 26456790 | 3 | |
Insertion | Chr5 | 19407613 | 19407614 | 2 | |
Insertion | Chr5 | 20468163 | 20468172 | 10 | |
Insertion | Chr5 | 5129970 | 5129975 | 6 | |
Insertion | Chr5 | 9484996 | 9484996 | 1 | |
Insertion | Chr7 | 25737648 | 25737651 | 4 | |
Insertion | Chr8 | 17915418 | 17915418 | 1 | |
Insertion | Chr8 | 20226940 | 20227007 | 68 | |
Insertion | Chr8 | 20522199 | 20522199 | 1 | |
Insertion | Chr9 | 11041053 | 11041078 | 26 | |
Insertion | Chr9 | 4898974 | 4899039 | 66 | |
Insertion | Chr9 | 5177773 | 5177782 | 10 |
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr12 | 143367 | 535512 | |
Inversion | Chr12 | 143382 | 535515 | |
Inversion | Chr4 | 15123205 | 15168442 | LOC_Os04g25990 |
Inversion | Chr12 | 20910148 | 21304478 | LOC_Os12g35000 |
Inversion | Chr12 | 20910158 | 21304510 | LOC_Os12g35000 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 6618993 | Chr6 | 13457412 | 2 |
Translocation | Chr8 | 13778155 | Chr5 | 12302080 | LOC_Os08g22910 |
Translocation | Chr3 | 20535249 | Chr1 | 14983481 | LOC_Os01g26400 |
Translocation | Chr9 | 21806557 | Chr5 | 6399594 |