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Mutant Information

Mutant Name	FN3015-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3015-S Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11950963	C-T	HET	INTERGENIC
SBS	Chr1	12698015	T-A	HET	INTERGENIC
SBS	Chr1	12724036	G-T	HET	SYNONYMOUS_CODING
SBS	Chr1	12724038	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22620
SBS	Chr1	1274528	G-A	HOMO	INTERGENIC
SBS	Chr1	17338305	G-A	HET	INTERGENIC
SBS	Chr1	21939212	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g39020
SBS	Chr1	30436713	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	33670341	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	37934840	A-G	HOMO	INTERGENIC
SBS	Chr10	15506178	T-A	HET	INTERGENIC
SBS	Chr10	614129	A-G	HET	INTERGENIC
SBS	Chr10	754040	A-G	HET	INTERGENIC
SBS	Chr10	754051	A-G	HET	INTERGENIC
SBS	Chr11	10286058	G-A	HOMO	INTERGENIC
SBS	Chr12	14498624	T-C	HET	INTERGENIC
SBS	Chr12	2183457	C-T	HET	INTERGENIC
SBS	Chr12	25294299	G-A	HET	INTERGENIC
SBS	Chr2	1298553	G-A	HET	SPLICE_SITE_ACCEPTOR	LOC_Os02g03240
SBS	Chr2	30204504	A-C	HET	INTERGENIC
SBS	Chr2	3852592	C-T	HET	INTERGENIC
SBS	Chr3	30979550	G-A	HET	INTERGENIC
SBS	Chr3	31804952	A-T	HET	INTERGENIC
SBS	Chr3	32774982	A-T	HET	INTERGENIC
SBS	Chr3	8572312	G-A	HET	INTERGENIC
SBS	Chr4	27901447	G-C	HOMO	INTERGENIC
SBS	Chr5	7214283	G-C	HET	INTRON
SBS	Chr6	15027955	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g25730
SBS	Chr6	27240716	A-G	HOMO	INTERGENIC
SBS	Chr6	29505563	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	4909959	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g09650
SBS	Chr7	19022109	C-T	HOMO	INTERGENIC
SBS	Chr7	26934533	C-T	HET	START_GAINED
SBS	Chr7	27290520	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	29088545	C-T	HET	INTERGENIC
SBS	Chr9	6812314	T-G	HET	INTERGENIC

Deletions: 116

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	133001	165000	31999	4
Deletion	Chr9	324874	324875	1
Deletion	Chr4	1439001	1454000	14999	4
Deletion	Chr12	1704001	1726000	21999	6
Deletion	Chr4	1793001	1806000	12999	3
Deletion	Chr4	1957115	1957116	1	LOC_Os04g04200
Deletion	Chr9	2173001	2180000	6999
Deletion	Chr8	2899829	2899830	1
Deletion	Chr10	3219385	3219386	1
Deletion	Chr6	3721001	3759000	37999	7
Deletion	Chr8	3731944	3731945	1
Deletion	Chr10	4403001	4421000	17999	3
Deletion	Chr12	4407609	4407610	1
Deletion	Chr10	4685001	4733000	47999	11
Deletion	Chr4	4983001	5007000	23999	4
Deletion	Chr9	5061428	5061516	88
Deletion	Chr9	5479001	5493000	13999	2
Deletion	Chr8	5894001	5907000	12999	2
Deletion	Chr10	6292001	6315000	22999	3
Deletion	Chr11	6734283	6734284	1
Deletion	Chr9	7156001	7173000	16999	2
Deletion	Chr10	7228481	7228482	1
Deletion	Chr7	7623001	7643000	19999	3
Deletion	Chr5	7866001	7895000	28999	5
Deletion	Chr8	8050001	8071000	20999	5
Deletion	Chr12	8119001	8144000	24999	4
Deletion	Chr5	8231001	8252000	20999	LOC_Os05g14540
Deletion	Chr11	8246314	8246316	2
Deletion	Chr11	8484001	8504000	19999	4
Deletion	Chr7	8591001	8620000	28999	6
Deletion	Chr12	8714524	8714529	5
Deletion	Chr9	8737001	8758000	20999	3
Deletion	Chr4	8777001	8810000	32999	6
Deletion	Chr2	8936001	8955000	18999	3
Deletion	Chr5	9011001	9031000	19999	4
Deletion	Chr6	9112001	9132000	19999	4
Deletion	Chr12	9221001	9232000	10999	2
Deletion	Chr1	9428321	9428322	1
Deletion	Chr11	9709001	9727000	17999	4
Deletion	Chr4	10240001	10262000	21999	5
Deletion	Chr11	10295001	10345000	49999	7
Deletion	Chr7	10342001	10361000	18999	4
Deletion	Chr8	10444001	10458000	13999	2
Deletion	Chr8	10978001	10997000	18999	4
Deletion	Chr9	11022001	11058000	35999	2
Deletion	Chr9	11285001	11295000	9999	2
Deletion	Chr11	11310001	11329000	18999	5
Deletion	Chr7	11941001	11954000	12999	2
Deletion	Chr1	11983001	11999000	15999	LOC_Os01g22590
Deletion	Chr6	12116001	12149000	32999	8
Deletion	Chr10	12138001	12150000	11999	2
Deletion	Chr12	12245001	12258000	12999	2
Deletion	Chr6	12287001	12310000	22999	5
Deletion	Chr10	12522469	12522473	4	LOC_Os10g24420
Deletion	Chr4	12703001	12720000	16999	4
Deletion	Chr2	12760001	12778000	17999	2
Deletion	Chr5	13043001	13079000	35999	3
Deletion	Chr4	13254001	13290000	35999	5
Deletion	Chr3	13388576	13388580	4
Deletion	Chr2	13531001	13560000	28999	7
Deletion	Chr1	14573001	14597000	23999	4
Deletion	Chr7	14679001	14695000	15999	2
Deletion	Chr2	15047001	15070000	22999	4
Deletion	Chr5	15782001	15798000	15999	2
Deletion	Chr1	15929001	15973000	43999	8
Deletion	Chr4	15940001	15981000	40999	4
Deletion	Chr10	15952374	15952375	1
Deletion	Chr7	15974001	15988000	13999	2
Deletion	Chr6	16552001	16577000	24999	3
Deletion	Chr9	16594251	16594253	2
Deletion	Chr9	16681237	16681259	22	LOC_Os09g27460
Deletion	Chr1	16851211	16851893	682
Deletion	Chr4	16925001	16940000	14999	2
Deletion	Chr6	17041001	17058000	16999	2
Deletion	Chr5	17412001	17428000	15999	2
Deletion	Chr10	17829001	17842000	12999	LOC_Os10g34602
Deletion	Chr8	18658001	18670000	11999	3
Deletion	Chr5	18669001	18679000	9999	2
Deletion	Chr8	18845001	18862000	16999	2
Deletion	Chr1	19413001	19433000	19999	3
Deletion	Chr3	20105001	20125000	19999	4
Deletion	Chr2	20405294	20405295	1
Deletion	Chr12	20440677	20440678	1
Deletion	Chr1	20617483	20617484	1
Deletion	Chr9	20925001	20935000	9999	LOC_Os09g37230
Deletion	Chr11	21085001	21113000	27999	4
Deletion	Chr12	21729001	21759000	29999	2
Deletion	Chr12	21904673	21904696	23
Deletion	Chr6	22298221	22298239	18
Deletion	Chr9	22450001	22500000	49999	7
Deletion	Chr7	22684001	22716000	31999	5
Deletion	Chr2	23658001	23688000	29999	6
Deletion	Chr7	24039001	24057000	17999	4
Deletion	Chr12	24418001	24450000	31999	4
Deletion	Chr6	24643001	24673000	29999	3
Deletion	Chr3	25403113	25403114	1	LOC_Os03g45000
Deletion	Chr11	25416001	25429000	12999	3
Deletion	Chr6	25446001	25475000	28999	4
Deletion	Chr5	26107001	26127000	19999	3
Deletion	Chr3	26132675	26132679	4	LOC_Os03g46220
Deletion	Chr11	26625001	26643000	17999	6
Deletion	Chr7	26885001	26911000	25999	3
Deletion	Chr7	27222436	27222438	2
Deletion	Chr3	28269001	28288000	18999	3
Deletion	Chr3	28724001	28739000	14999	2
Deletion	Chr3	29250001	29266000	15999	LOC_Os03g51140
Deletion	Chr1	29396001	29415000	18999	2
Deletion	Chr2	29566001	29581000	14999	LOC_Os02g48620
Deletion	Chr3	30122001	30148000	25999	6
Deletion	Chr2	31336745	31336780	35
Deletion	Chr4	31469951	31470018	67
Deletion	Chr4	33143236	33143242	6
Deletion	Chr2	33733933	33733944	11
Deletion	Chr3	35081994	35081995	1
Deletion	Chr3	36045962	36045964	2
Deletion	Chr1	38400213	38400215	2

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12457320	12457320	1
Insertion	Chr12	12061963	12061963	1
Insertion	Chr12	14972322	14972323	2
Insertion	Chr12	20683500	20683501	2
Insertion	Chr2	27574813	27574813	1
Insertion	Chr2	3899198	3899198	1	LOC_Os02g07530
Insertion	Chr4	9988432	9988432	1
Insertion	Chr5	11410351	11410353	3
Insertion	Chr5	2429594	2429594	1	LOC_Os05g05000
Insertion	Chr5	5207897	5207898	2
Insertion	Chr5	5234037	5234037	1
Insertion	Chr6	10303215	10303215	1
Insertion	Chr6	23209053	23209053	1
Insertion	Chr6	7425702	7425765	64
Insertion	Chr7	19022119	19022122	4
Insertion	Chr7	27604320	27604322	3	LOC_Os07g46260
Insertion	Chr7	4625865	4625989	125
Insertion	Chr9	21477611	21477614	4

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1246392	1497430
Inversion	Chr2	1246401	1497436
Inversion	Chr6	24302592	24408171
Inversion	Chr7	26557974	27379636	LOC_Os07g44460
Inversion	Chr7	26561030	27396118
Inversion	Chr2	29566257	29836730	LOC_Os02g48740

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	677610	Chr1	28337514
Translocation	Chr3	12737380	Chr1	15903698
Translocation	Chr2	12757219	Chr1	38645014
Translocation	Chr2	12757312	Chr1	38645012
Translocation	Chr10	17168622	Chr2	8469346
Translocation	Chr10	17168625	Chr2	8468548
Translocation	Chr6	23358762	Chr1	15903707
Translocation	Chr6	23359415	Chr3	12746207
Translocation	Chr6	23539623	Chr2	10935360	LOC_Os02g18760
Translocation	Chr6	24302595	Chr2	32926349
Translocation	Chr6	24408172	Chr2	32915130

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