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Mutant Information

Mutant Name	FN3016-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3016-S Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29483372	A-G	HET	UTR_3_PRIME
SBS	Chr1	3052807	G-A	HET	INTERGENIC
SBS	Chr1	33607890	T-A	HET	INTERGENIC
SBS	Chr1	34874780	C-T	HET	INTRON
SBS	Chr1	39719562	T-A	HOMO	INTERGENIC
SBS	Chr1	8273031	G-T	HET	INTERGENIC
SBS	Chr10	10205178	T-C	HET	INTERGENIC
SBS	Chr10	12103240	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g23190
SBS	Chr10	12103241	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	17100566	C-T	HET	INTERGENIC
SBS	Chr10	17859632	T-G	HET	INTRON
SBS	Chr11	11477660	G-A	HOMO	INTERGENIC
SBS	Chr11	14848107	A-T	HET	INTERGENIC
SBS	Chr11	14848109	C-T	HET	INTERGENIC
SBS	Chr11	26668329	T-A	HET	INTERGENIC
SBS	Chr11	9058168	C-T	HET	INTRON
SBS	Chr11	9869571	C-T	HET	INTERGENIC
SBS	Chr12	15945706	A-C	HET	INTRON
SBS	Chr2	18989821	T-A	HET	INTERGENIC
SBS	Chr2	22781194	G-A	HET	INTERGENIC
SBS	Chr2	32764606	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr2	85012	C-T	HOMO	INTERGENIC
SBS	Chr6	14165269	T-A	HET	INTERGENIC
SBS	Chr6	16711962	G-A	HET	INTRON
SBS	Chr7	5951456	C-G	HET	UTR_5_PRIME
SBS	Chr7	7529309	T-A	HET	INTRON
SBS	Chr8	12324413	C-T	HET	INTERGENIC
SBS	Chr8	17708785	T-C	HET	INTERGENIC
SBS	Chr9	14756658	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	22632554	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g39350
SBS	Chr9	5495450	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 89

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	241487	241488	1
Deletion	Chr8	1412520	1412521	1
Deletion	Chr7	1661566	1661567	1	LOC_Os07g03940
Deletion	Chr11	2096907	2096915	8
Deletion	Chr4	3177612	3177613	1
Deletion	Chr11	3595695	3595705	10
Deletion	Chr8	4247361	4247362	1
Deletion	Chr12	4350777	4350800	23
Deletion	Chr10	4674001	4741000	66999	15
Deletion	Chr8	5036828	5036829	1
Deletion	Chr10	5186976	5186977	1
Deletion	Chr4	5365826	5365827	1
Deletion	Chr9	5500404	5500445	41
Deletion	Chr10	5728291	5728370	79
Deletion	Chr7	5925256	5925257	1
Deletion	Chr10	6290001	6312000	21999	3
Deletion	Chr10	6439364	6439366	2	LOC_Os10g11666
Deletion	Chr9	6646001	6740000	93999	10
Deletion	Chr4	7538302	7538313	11
Deletion	Chr1	7861415	7861419	4
Deletion	Chr5	7872001	7892000	19999	4
Deletion	Chr7	8253283	8253285	2
Deletion	Chr1	8715233	8715234	1
Deletion	Chr4	8767001	8810000	42999	7
Deletion	Chr10	9032001	9136000	103999	14
Deletion	Chr5	9187001	9240000	52999	5
Deletion	Chr10	9318001	9344000	25999	5
Deletion	Chr1	9569713	9569726	13
Deletion	Chr5	9716001	9745000	28999	4
Deletion	Chr6	10408001	10433000	24999	2
Deletion	Chr4	10589001	10611000	21999	3
Deletion	Chr6	10750372	10750451	79
Deletion	Chr8	10894001	10912000	17999	2
Deletion	Chr1	11139562	11139582	20
Deletion	Chr1	11292339	11292340	1
Deletion	Chr5	11911001	12012000	100999	15
Deletion	Chr3	12496347	12496348	1	LOC_Os03g21850
Deletion	Chr12	13381592	13381609	17
Deletion	Chr4	13541927	13541929	2
Deletion	Chr12	14098357	14098359	2
Deletion	Chr12	14141001	14157000	15999	2
Deletion	Chr11	14219770	14219859	89
Deletion	Chr9	14230796	14230797	1
Deletion	Chr1	14579001	14616000	36999	10
Deletion	Chr7	14673001	14709000	35999	6
Deletion	Chr6	14889001	14927000	37999	5
Deletion	Chr7	14968784	14968793	9
Deletion	Chr12	15034563	15034576	13
Deletion	Chr2	15038001	15067000	28999	4
Deletion	Chr7	15404951	15404952	1
Deletion	Chr8	15792001	15810000	17999	3
Deletion	Chr12	15857001	15893000	35999	2
Deletion	Chr2	15933001	15961000	27999	3
Deletion	Chr3	16769218	16769219	1
Deletion	Chr1	17364001	17423000	58999	9
Deletion	Chr3	18039001	18082000	42999	7
Deletion	Chr12	18061808	18061817	9
Deletion	Chr12	18162001	18186000	23999	4
Deletion	Chr12	18258001	18282000	23999	3
Deletion	Chr10	18446001	18512000	65999	9
Deletion	Chr8	18648001	18673000	24999	3
Deletion	Chr9	19174450	19174505	55	LOC_Os09g32120
Deletion	Chr1	20009369	20009439	70
Deletion	Chr2	20414001	20437000	22999	4
Deletion	Chr5	21995348	21995354	6	LOC_Os05g37590
Deletion	Chr2	22606001	22690000	83999	16
Deletion	Chr3	22725001	22753000	27999	5
Deletion	Chr12	23655379	23655400	21
Deletion	Chr11	24660001	24699000	38999	3
Deletion	Chr8	26450001	26481000	30999	3
Deletion	Chr11	27012178	27012181	3	LOC_Os11g44670
Deletion	Chr7	27408001	27428000	19999	4
Deletion	Chr2	27885001	27910000	24999	5
Deletion	Chr3	27913001	27926000	12999	3
Deletion	Chr11	28982147	28982152	5
Deletion	Chr3	29255001	29271000	15999	LOC_Os03g51550
Deletion	Chr2	29698373	29698376	3
Deletion	Chr5	29951853	29951854	1
Deletion	Chr3	30126001	30175000	48999	8
Deletion	Chr4	31790001	31807000	16999	2
Deletion	Chr3	32215001	32231000	15999	3
Deletion	Chr3	32400359	32400361	2
Deletion	Chr4	33158001	33174000	15999	3
Deletion	Chr3	34137633	34137703	70
Deletion	Chr4	35074674	35074677	3
Deletion	Chr1	35281004	35281005	1
Deletion	Chr1	36755001	36775000	19999	3
Deletion	Chr1	40746184	40746195	11
Deletion	Chr1	40963001	40976000	12999	3

Insertions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23862783	23862858	76
Insertion	Chr1	27072046	27072046	1
Insertion	Chr10	5103788	5103789	2
Insertion	Chr11	19295064	19295065	2
Insertion	Chr11	22388532	22388561	30
Insertion	Chr11	24234501	24234508	8
Insertion	Chr11	5620482	5620486	5
Insertion	Chr12	11626172	11626178	7
Insertion	Chr12	14971531	14971531	1
Insertion	Chr12	15922813	15922814	2
Insertion	Chr12	21379526	21379526	1
Insertion	Chr12	6926849	6926905	57
Insertion	Chr2	27891472	27891491	20
Insertion	Chr2	5330255	5330255	1
Insertion	Chr2	9034220	9034252	33
Insertion	Chr3	9316533	9316534	2
Insertion	Chr4	15177145	15177145	1
Insertion	Chr4	28252597	28252600	4
Insertion	Chr4	6670465	6670479	15
Insertion	Chr5	20345564	20345594	31
Insertion	Chr6	1143128	1143129	2	LOC_Os06g03090
Insertion	Chr6	11538872	11538872	1
Insertion	Chr6	12168232	12168233	2
Insertion	Chr6	20528740	20528822	83
Insertion	Chr6	21389882	21389882	1
Insertion	Chr6	6706942	6706943	2
Insertion	Chr6	6948495	6948495	1
Insertion	Chr7	11487908	11487908	1
Insertion	Chr7	14384256	14384298	43
Insertion	Chr7	8214608	8214608	1
Insertion	Chr8	3835125	3835141	17
Insertion	Chr9	12239664	12239684	21
Insertion	Chr9	2243395	2243395	1	LOC_Os09g04240
Insertion	Chr9	5365238	5365238	1

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2901155	Chr1	39715916
Translocation	Chr7	9666151	Chr4	14117289
Translocation	Chr11	11900466	Chr9	13703324
Translocation	Chr12	16182376	Chr4	32905476	2
Translocation	Chr5	17883149	Chr3	31648204

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