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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11419626	T-A	HET	SYNONYMOUS_CODING
SBS	Chr1	17038374	C-T	HET	INTRON
SBS	Chr1	30675	A-G	HET	INTRON
SBS	Chr1	31015656	T-G	HET	INTERGENIC
SBS	Chr10	12219836	C-T	HET	INTERGENIC
SBS	Chr10	20905200	T-A	HET	INTERGENIC
SBS	Chr10	5945112	A-G	HET	INTERGENIC
SBS	Chr11	10498141	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	14183016	G-A	HOMO	INTERGENIC
SBS	Chr12	24101610	G-A	HET	INTERGENIC
SBS	Chr12	26605451	G-A	HET	INTERGENIC
SBS	Chr12	3436145	G-T	HET	INTRON
SBS	Chr2	14746149	C-A	HET	INTERGENIC
SBS	Chr2	1743552	G-A	HOMO	INTRON
SBS	Chr2	1743553	G-A	HOMO	INTRON
SBS	Chr2	27515718	G-T	HET	INTERGENIC
SBS	Chr3	12992753	G-T	HOMO	INTRON
SBS	Chr3	23865075	G-A	HET	INTERGENIC
SBS	Chr3	9550822	T-C	HOMO	INTERGENIC
SBS	Chr4	26561864	T-A	HET	INTERGENIC
SBS	Chr4	6030575	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g11080
SBS	Chr5	15224124	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g26160
SBS	Chr5	25700829	T-A	HET	INTERGENIC
SBS	Chr5	27919734	A-C	HET	INTERGENIC
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr6	24866993	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g41480
SBS	Chr6	27993090	C-T	HET	INTERGENIC
SBS	Chr6	8386577	G-A	HOMO	INTERGENIC
SBS	Chr7	23452877	G-A	HOMO	INTERGENIC
SBS	Chr7	24149448	C-A	HET	INTERGENIC
SBS	Chr7	28532846	G-C	HOMO	INTERGENIC
SBS	Chr8	18131722	C-A	HOMO	INTRON
SBS	Chr8	942398	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g02370
SBS	Chr9	16751578	G-C	HET	INTERGENIC
SBS	Chr9	17666337	G-A	HET	INTERGENIC
SBS	Chr9	18583662	G-A	HET	INTERGENIC
SBS	Chr9	4774302	A-C	HET	INTERGENIC
SBS	Chr9	4888421	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09130

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	737703	737706	3
Deletion	Chr4	972693	972698	5
Deletion	Chr3	1711001	1911000	199999	33
Deletion	Chr5	1919163	1919169	6
Deletion	Chr3	1920001	1939000	18999	4
Deletion	Chr3	2428484	2428485	1	LOC_Os03g05010
Deletion	Chr4	2880416	2880444	28
Deletion	Chr6	4568073	4568077	4
Deletion	Chr3	5069117	5069118	1
Deletion	Chr10	5096030	5096031	1
Deletion	Chr10	7137671	7137672	1
Deletion	Chr10	7158677	7158747	70
Deletion	Chr6	7867398	7867432	34
Deletion	Chr6	8619237	8619321	84	LOC_Os06g15210
Deletion	Chr5	8648387	8648389	2
Deletion	Chr4	9003268	9003269	1
Deletion	Chr5	9731001	9731031	30
Deletion	Chr11	10209841	10209846	5
Deletion	Chr8	11044110	11044113	3
Deletion	Chr9	13224235	13224281	46
Deletion	Chr10	14212029	14212030	1
Deletion	Chr2	14218656	14218664	8
Deletion	Chr1	15607151	15607152	1
Deletion	Chr12	15837814	15837821	7	LOC_Os12g27050
Deletion	Chr4	16083647	16083649	2
Deletion	Chr5	16856851	16856854	3
Deletion	Chr12	17716846	17716847	1
Deletion	Chr8	17740872	17740873	1	LOC_Os08g28990
Deletion	Chr6	19050608	19050611	3	LOC_Os06g32760
Deletion	Chr8	20204001	20227000	22999	4
Deletion	Chr7	20987045	20987046	1
Deletion	Chr8	21230591	21230595	4
Deletion	Chr3	24504121	24504127	6
Deletion	Chr11	26622499	26622500	1
Deletion	Chr4	29534569	29534578	9

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12170686	12170770	85
Insertion	Chr1	5971819	5971819	1
Insertion	Chr10	5264583	5264583	1
Insertion	Chr10	7128561	7128561	1
Insertion	Chr10	7161757	7161757	1
Insertion	Chr11	14910758	14910827	70
Insertion	Chr12	26316418	26316419	2
Insertion	Chr2	9382573	9382579	7
Insertion	Chr3	28457224	28457238	15
Insertion	Chr4	21904768	21904769	2
Insertion	Chr4	23681804	23681804	1
Insertion	Chr4	6467183	6467266	84
Insertion	Chr4	7803262	7803262	1
Insertion	Chr6	14040656	14040656	1
Insertion	Chr8	12104566	12104585	20
Insertion	Chr8	16824905	16824977	73

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	16288108	16396091

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1246800	Chr5	6483335
Translocation	Chr10	1246805	Chr5	6482921
Translocation	Chr5	5646482	Chr1	13012420	2
Translocation	Chr7	11905752	Chr4	16178237	LOC_Os04g27380
Translocation	Chr12	25668534	Chr6	4479377
Translocation	Chr11	28752670	Chr1	19235201

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