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Mutant Information

Mutant Name	FN3028-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3028-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24205784	G-A	HET	INTERGENIC
SBS	Chr1	35384566	G-A	HET	INTERGENIC
SBS	Chr1	38675040	C-T	HOMO	INTERGENIC
SBS	Chr1	8183534	T-C	HOMO	INTERGENIC
SBS	Chr10	15529452	C-T	HOMO	INTERGENIC
SBS	Chr11	17538111	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g30170
SBS	Chr11	4993381	C-A	HET	INTERGENIC
SBS	Chr2	32232318	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	32582033	A-T	HOMO	INTERGENIC
SBS	Chr3	17140123	A-T	HET	INTERGENIC
SBS	Chr3	18817260	A-G	HOMO	INTERGENIC
SBS	Chr3	21013069	T-C	HET	INTRON
SBS	Chr3	2689715	C-T	HET	INTERGENIC
SBS	Chr4	13275191	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23260
SBS	Chr4	21215831	G-A	HET	UTR_3_PRIME
SBS	Chr4	25948023	G-A	HET	INTERGENIC
SBS	Chr4	27076813	C-A	HET	INTERGENIC
SBS	Chr7	12977999	A-G	HET	INTERGENIC
SBS	Chr7	17100521	G-A	HOMO	INTERGENIC
SBS	Chr8	11768004	C-T	HET	INTERGENIC
SBS	Chr8	9753069	G-A	HOMO	SPLICE_SITE_REGION
SBS	Chr9	1454701	A-C	HET	INTERGENIC
SBS	Chr9	5769257	G-T	HET	INTRON

Deletions: 957

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	343001	370000	26999	LOC_Os01g08200
Deletion	Chr10	518001	529000	10999	3
Deletion	Chr10	534001	554000	19999	4
Deletion	Chr9	541001	553000	11999	3
Deletion	Chr8	556001	583000	26999	5
Deletion	Chr9	687001	699000	11999	4
Deletion	Chr7	705001	721000	15999	3
Deletion	Chr12	743001	763000	19999	2
Deletion	Chr7	772001	794000	21999	2
Deletion	Chr8	807001	823000	15999	2
Deletion	Chr8	909001	928000	18999	2
Deletion	Chr7	923001	951000	27999	8
Deletion	Chr10	959001	991000	31999	5
Deletion	Chr2	984001	1013000	28999	3
Deletion	Chr10	1014001	1039000	24999	3
Deletion	Chr11	1019001	1053000	33999	7
Deletion	Chr10	1040328	1040329	1
Deletion	Chr9	1066001	1102000	35999	2
Deletion	Chr2	1105001	1116000	10999	LOC_Os02g03330
Deletion	Chr12	1120001	1140000	19999	4
Deletion	Chr6	1148001	1165000	16999	2
Deletion	Chr9	1186001	1213000	26999	3
Deletion	Chr8	1342001	1368000	25999	4
Deletion	Chr2	1345001	1375000	29999	6
Deletion	Chr10	1363001	1449000	85999	17
Deletion	Chr12	1419001	1454000	34999	13
Deletion	Chr4	1436001	1451000	14999	3
Deletion	Chr4	1481001	1501000	19999	3
Deletion	Chr2	1628001	1650000	21999	4
Deletion	Chr4	1632906	1632907	1
Deletion	Chr9	1645001	1676000	30999	2
Deletion	Chr4	1661001	1676000	14999
Deletion	Chr11	1662001	1684000	21999	5
Deletion	Chr9	1683001	1713000	29999	7
Deletion	Chr8	1695001	1781000	85999	14
Deletion	Chr12	1712001	1730000	17999	6
Deletion	Chr10	1723001	1738000	14999	2
Deletion	Chr9	1767001	1794000	26999	3
Deletion	Chr8	1808001	1826000	17999	3
Deletion	Chr8	1866001	1877000	10999	3
Deletion	Chr3	1870001	1893000	22999	6
Deletion	Chr9	1895001	1913000	17999	LOC_Os09g03870
Deletion	Chr4	1945001	1982000	36999	7
Deletion	Chr9	1967001	2004000	36999	6
Deletion	Chr3	1968001	1993000	24999	3
Deletion	Chr5	2035001	2051000	15999	4
Deletion	Chr10	2239001	2277000	37999	6
Deletion	Chr8	2249001	2260000	10999	LOC_Os08g05370
Deletion	Chr10	2291001	2308000	16999	2
Deletion	Chr11	2298001	2337000	38999	8
Deletion	Chr3	2328001	2355000	26999	3
Deletion	Chr4	2384001	2429000	44999	7
Deletion	Chr2	2450001	2485000	34999	7
Deletion	Chr12	2688001	2711000	22999	7
Deletion	Chr10	2725001	2754000	28999	4
Deletion	Chr12	2745001	2762000	16999	3
Deletion	Chr8	2835001	2886000	50999	8
Deletion	Chr3	2893001	2908000	14999	4
Deletion	Chr2	2898001	2919000	20999	2
Deletion	Chr11	2950001	2987000	36999	8
Deletion	Chr8	3051001	3097000	45999	7
Deletion	Chr9	3053001	3078000	24999	3
Deletion	Chr10	3061001	3103000	41999	5
Deletion	Chr3	3067001	3090000	22999	2
Deletion	Chr5	3069001	3106000	36999	6
Deletion	Chr4	3089001	3152000	62999	9
Deletion	Chr5	3109001	3163000	53999	5
Deletion	Chr12	3132001	3151000	18999	2
Deletion	Chr6	3234001	3246000	11999	2
Deletion	Chr9	3241001	3263000	21999	5
Deletion	Chr7	3250001	3290000	39999	7
Deletion	Chr10	3270001	3303000	32999	9
Deletion	Chr9	3300001	3342000	41999	5
Deletion	Chr2	3302001	3329000	26999	5
Deletion	Chr12	3366001	3387000	20999	3
Deletion	Chr7	3376001	3448000	71999	10
Deletion	Chr9	3425001	3440000	14999	2
Deletion	Chr9	3454001	3486000	31999	3
Deletion	Chr12	3462001	3478000	15999	3
Deletion	Chr4	3473001	3483000	9999	2
Deletion	Chr11	3552001	3591000	38999	7
Deletion	Chr9	3584001	3603000	18999	2
Deletion	Chr11	3629001	3669000	39999	7
Deletion	Chr10	3640001	3660000	19999	4
Deletion	Chr7	3647001	3667000	19999	2
Deletion	Chr10	3676001	3712000	35999	3
Deletion	Chr6	3685001	3762000	76999	13
Deletion	Chr10	3686553	3686556	3
Deletion	Chr9	3696001	3714000	17999	2
Deletion	Chr9	3797001	3821000	23999	4
Deletion	Chr10	3817001	3839000	21999	2
Deletion	Chr3	3871001	3900000	28999	8
Deletion	Chr10	3894001	3921000	26999	4
Deletion	Chr11	3904001	3952000	47999	9
Deletion	Chr8	3955001	3995000	39999	5
Deletion	Chr11	3988001	4007000	18999	5
Deletion	Chr9	3998001	4041000	42999	6
Deletion	Chr6	4002001	4023000	20999	4
Deletion	Chr9	4069001	4094000	24999	3
Deletion	Chr8	4117001	4134000	16999	4
Deletion	Chr12	4131001	4155000	23999	3
Deletion	Chr6	4160593	4160594	1
Deletion	Chr9	4227001	4255000	27999	3
Deletion	Chr7	4248001	4275000	26999	4
Deletion	Chr1	4256001	4270000	13999	2
Deletion	Chr9	4290001	4330000	39999	5
Deletion	Chr12	4291001	4328000	36999	9
Deletion	Chr10	4294001	4430000	135999	24
Deletion	Chr7	4371001	4397000	25999	3
Deletion	Chr2	4383001	4407000	23999	4
Deletion	Chr9	4390001	4405000	14999	2
Deletion	Chr11	4392001	4453000	60999	13
Deletion	Chr10	4457001	4483000	25999	4
Deletion	Chr7	4465001	4478000	12999	4
Deletion	Chr2	4466001	4504000	37999	4
Deletion	Chr6	4467001	4483000	15999	3
Deletion	Chr11	4530001	4558000	27999	3
Deletion	Chr4	4560001	4610000	49999	5
Deletion	Chr10	4566001	4604000	37999	7
Deletion	Chr10	4677001	4741000	63999	14
Deletion	Chr12	4684001	4776000	91999	14
Deletion	Chr1	4693001	4708000	14999	2
Deletion	Chr9	4754001	4791000	36999	6
Deletion	Chr7	4859001	4887000	27999	4
Deletion	Chr3	4892001	4919000	26999	6
Deletion	Chr10	4916001	4933000	16999	3
Deletion	Chr3	4929001	4950000	20999	3
Deletion	Chr4	4960001	5070000	109999	11
Deletion	Chr7	5020001	5071000	50999	6
Deletion	Chr8	5075001	5104000	28999	5
Deletion	Chr12	5120001	5147000	26999	3
Deletion	Chr2	5124001	5151000	26999	3
Deletion	Chr5	5152001	5176000	23999	6
Deletion	Chr1	5186001	5203000	16999	3
Deletion	Chr5	5188001	5209000	20999	6
Deletion	Chr7	5190001	5207000	16999	4
Deletion	Chr12	5247001	5272000	24999	7
Deletion	Chr8	5276001	5301000	24999	4
Deletion	Chr12	5279001	5313000	33999	5
Deletion	Chr10	5334001	5365000	30999	5
Deletion	Chr12	5373001	5403000	29999	8
Deletion	Chr10	5441001	5467000	25999	2
Deletion	Chr4	5496001	5511000	14999	3
Deletion	Chr10	5514001	5547000	32999	3
Deletion	Chr6	5559001	5609000	49999	10
Deletion	Chr11	5562001	5583000	20999	4
Deletion	Chr7	5565001	5585000	19999	4
Deletion	Chr8	5609001	5654000	44999	9
Deletion	Chr10	5635001	5660000	24999	11
Deletion	Chr5	5658001	5697000	38999	10
Deletion	Chr11	5672001	5696000	23999	3
Deletion	Chr10	5718001	5734000	15999	3
Deletion	Chr7	5723001	5747000	23999	3
Deletion	Chr1	5728001	5758000	29999	7
Deletion	Chr11	5792001	5833000	40999	8
Deletion	Chr4	5803001	5857000	53999	9
Deletion	Chr5	5826001	5841000	14999	5
Deletion	Chr10	5857326	5857327	1
Deletion	Chr11	5890001	5904000	13999	7
Deletion	Chr9	5905001	5915000	9999	2
Deletion	Chr3	5911001	5981000	69999	9
Deletion	Chr5	5937001	5959000	21999	2
Deletion	Chr6	5985001	6005000	19999	2
Deletion	Chr8	6010001	6042000	31999	3
Deletion	Chr10	6085001	6112000	26999	5
Deletion	Chr6	6091001	6108000	16999	3
Deletion	Chr9	6096001	6168000	71999	12
Deletion	Chr1	6106001	6121000	14999	2
Deletion	Chr11	6173001	6207000	33999	5
Deletion	Chr10	6184001	6254000	69999	10
Deletion	Chr4	6199001	6214000	14999	LOC_Os04g11390
Deletion	Chr4	6224001	6248000	23999	4
Deletion	Chr3	6273001	6297000	23999	7
Deletion	Chr9	6283001	6299000	15999	2
Deletion	Chr10	6286001	6316000	29999	4
Deletion	Chr1	6317001	6340000	22999	2
Deletion	Chr6	6319001	6357000	37999	6
Deletion	Chr2	6349001	6364000	14999
Deletion	Chr9	6350001	6381000	30999	5
Deletion	Chr9	6443001	6467000	23999	6
Deletion	Chr7	6463001	6534000	70999	10
Deletion	Chr5	6549001	6574000	24999	3
Deletion	Chr2	6555001	6575000	19999	5
Deletion	Chr10	6597001	6617000	19999	4
Deletion	Chr4	6621001	6640000	18999	4
Deletion	Chr9	6677001	6739000	61999	6
Deletion	Chr10	6684001	6708000	23999	2
Deletion	Chr10	6733001	6768000	34999	4
Deletion	Chr9	6756001	6785000	28999	4
Deletion	Chr12	6765001	6787000	21999	4
Deletion	Chr1	6767001	6797000	29999	5
Deletion	Chr7	6770001	6821000	50999	8
Deletion	Chr12	6930001	6944000	13999	LOC_Os12g12990
Deletion	Chr10	6950001	6986000	35999	5
Deletion	Chr5	6975001	7010000	34999	7
Deletion	Chr7	6983001	7008000	24999	LOC_Os07g12740
Deletion	Chr10	6993001	7022000	28999	4
Deletion	Chr7	7013246	7013256	10
Deletion	Chr4	7018001	7045000	26999	7
Deletion	Chr1	7048001	7070000	21999	3
Deletion	Chr5	7049001	7094000	44999	7
Deletion	Chr8	7057001	7086000	28999	LOC_Os08g12020
Deletion	Chr1	7123001	7145000	21999	3
Deletion	Chr9	7155001	7170000	14999	LOC_Os09g12500
Deletion	Chr2	7166001	7185000	18999	5
Deletion	Chr12	7195001	7216000	20999	3
Deletion	Chr10	7216001	7337000	120999	18
Deletion	Chr5	7241001	7252000	10999	2
Deletion	Chr7	7281001	7304000	22999	3
Deletion	Chr11	7348001	7378000	29999	4
Deletion	Chr12	7360001	7377000	16999	6
Deletion	Chr7	7426001	7448000	21999	4
Deletion	Chr10	7428001	7549000	120999	18
Deletion	Chr7	7476001	7536000	59999	10
Deletion	Chr11	7505001	7548000	42999	2
Deletion	Chr10	7588001	7608000	19999	4
Deletion	Chr7	7601001	7651000	49999	6
Deletion	Chr11	7664001	7693000	28999	3
Deletion	Chr6	7698001	7736000	37999	4
Deletion	Chr11	7717001	7737000	19999	3
Deletion	Chr7	7783001	7822000	38999	6
Deletion	Chr12	7802001	7822000	19999	3
Deletion	Chr8	7805001	7819000	13999	2
Deletion	Chr3	7836001	7871000	34999	9
Deletion	Chr7	7849001	7927000	77999	17
Deletion	Chr1	7923001	7973000	49999	10
Deletion	Chr4	7929001	7937000	7999	LOC_Os04g14220
Deletion	Chr4	7975001	8010000	34999	8
Deletion	Chr6	7982001	8002000	19999	4
Deletion	Chr10	8019001	8030000	10999	3
Deletion	Chr8	8028001	8079000	50999	10
Deletion	Chr9	8065001	8088000	22999	4
Deletion	Chr6	8079001	8099000	19999	LOC_Os06g15420
Deletion	Chr12	8110001	8194000	83999	10
Deletion	Chr4	8144001	8167000	22999	2
Deletion	Chr1	8170001	8182000	11999	4
Deletion	Chr7	8172001	8191000	18999	2
Deletion	Chr11	8221001	8268000	46999	8
Deletion	Chr5	8229001	8254000	24999	LOC_Os05g14540
Deletion	Chr3	8268304	8268305	1
Deletion	Chr12	8269001	8288000	18999	4
Deletion	Chr1	8276001	8293000	16999	3
Deletion	Chr9	8298001	8355000	56999	7
Deletion	Chr4	8328001	8382000	53999	6
Deletion	Chr12	8353001	8379000	25999	3
Deletion	Chr5	8379001	8431000	51999	9
Deletion	Chr7	8384001	8406000	21999	2
Deletion	Chr2	8411001	8438000	26999	5
Deletion	Chr11	8435001	8507000	71999	14
Deletion	Chr10	8486001	8508000	21999	4
Deletion	Chr4	8509001	8533000	23999	5
Deletion	Chr5	8524001	8537000	12999	LOC_Os05g15950
Deletion	Chr5	8551084	8551086	2
Deletion	Chr3	8582001	8594000	11999	LOC_Os03g16880
Deletion	Chr4	8584001	8607000	22999	5
Deletion	Chr11	8588001	8610000	21999	3
Deletion	Chr9	8618001	8664000	45999	7
Deletion	Chr9	8742001	8766000	23999	3
Deletion	Chr11	8744001	8836000	91999	15
Deletion	Chr6	8765001	8793000	27999	8
Deletion	Chr4	8773001	8808000	34999	6
Deletion	Chr8	8869889	8869904	15
Deletion	Chr11	8885001	8929000	43999	10
Deletion	Chr4	8886001	8907000	20999	5
Deletion	Chr8	8929001	8967000	37999	5
Deletion	Chr8	8987001	9052000	64999	9
Deletion	Chr9	8988001	9014000	25999	2
Deletion	Chr2	9006001	9042000	35999	4
Deletion	Chr11	9038001	9055000	16999	2
Deletion	Chr4	9064001	9083000	18999	4
Deletion	Chr8	9082001	9098000	15999	LOC_Os08g15290
Deletion	Chr9	9092001	9193000	100999	7
Deletion	Chr6	9117001	9161000	43999	7
Deletion	Chr5	9193001	9241000	47999	5
Deletion	Chr12	9214001	9245000	30999	4
Deletion	Chr1	9217001	9244000	26999	4
Deletion	Chr11	9237001	9327000	89999	13
Deletion	Chr12	9262001	9315000	52999	12
Deletion	Chr8	9301001	9319000	17999	4
Deletion	Chr10	9306001	9377000	70999	12
Deletion	Chr8	9352001	9376000	23999	7
Deletion	Chr7	9369001	9393000	23999	6
Deletion	Chr3	9379001	9408000	28999	4
Deletion	Chr10	9449001	9476000	26999	4
Deletion	Chr8	9456138	9456139	1
Deletion	Chr4	9490001	9520000	29999	8
Deletion	Chr11	9506001	9553000	46999	4
Deletion	Chr8	9530001	9562000	31999	9
Deletion	Chr10	9531001	9560000	28999	5
Deletion	Chr8	9575001	9609000	33999	3
Deletion	Chr10	9580001	9603000	22999	3
Deletion	Chr7	9609001	9621000	11999	2
Deletion	Chr12	9618001	9649000	30999	6
Deletion	Chr8	9639001	9684000	44999	4
Deletion	Chr11	9651001	9670000	18999	2
Deletion	Chr7	9655001	9680000	24999	4
Deletion	Chr5	9708001	9742000	33999	5
Deletion	Chr6	9710001	9743000	32999	5
Deletion	Chr7	9742001	9762000	19999	3
Deletion	Chr2	9762366	9762370	4
Deletion	Chr3	9769001	9812000	42999	5
Deletion	Chr6	9817001	9851000	33999	5
Deletion	Chr8	9847001	9872000	24999	4
Deletion	Chr8	9881001	9909000	27999	4
Deletion	Chr12	9898001	9918000	19999	4
Deletion	Chr10	9928001	9955000	26999	4
Deletion	Chr9	9945001	9961000	15999	2
Deletion	Chr11	9988001	10014000	25999	4
Deletion	Chr11	10029001	10048000	18999	2
Deletion	Chr10	10118001	10159000	40999	7
Deletion	Chr9	10140001	10176000	35999	6
Deletion	Chr2	10153001	10185000	31999	5
Deletion	Chr8	10195001	10212000	16999	3
Deletion	Chr4	10204001	10281000	76999	13
Deletion	Chr1	10229001	10257000	27999	3
Deletion	Chr7	10233001	10255000	21999	3
Deletion	Chr5	10235001	10281000	45999	8
Deletion	Chr11	10244001	10367000	122999	13
Deletion	Chr7	10292001	10372000	79999	10
Deletion	Chr12	10385001	10486000	100999	11
Deletion	Chr8	10387001	10462000	74999	12
Deletion	Chr11	10393001	10484000	90999	15
Deletion	Chr1	10470001	10501000	30999	5
Deletion	Chr11	10530001	10603000	72999	7
Deletion	Chr10	10547001	10581000	33999	8
Deletion	Chr7	10612001	10658000	45999	7
Deletion	Chr4	10642001	10670000	27999	5
Deletion	Chr11	10658001	10698000	39999	5
Deletion	Chr7	10685001	10710000	24999	4
Deletion	Chr10	10731001	10768000	36999	2
Deletion	Chr4	10745001	10778000	32999	6
Deletion	Chr8	10772001	10793000	20999	3
Deletion	Chr2	10780001	10790000	9999	2
Deletion	Chr8	10813001	10844000	30999	5
Deletion	Chr12	10846001	10874000	27999	2
Deletion	Chr8	10859001	10917000	57999	3
Deletion	Chr7	10875001	10900000	24999	6
Deletion	Chr7	10948001	11015000	66999	14
Deletion	Chr9	10958001	10976000	17999	2
Deletion	Chr12	10966001	10989000	22999	4
Deletion	Chr5	10972001	11025000	52999	10
Deletion	Chr2	11008001	11029000	20999	4
Deletion	Chr1	11012001	11040000	27999	2
Deletion	Chr9	11013001	11056000	42999	3
Deletion	Chr7	11032001	11078000	45999	6
Deletion	Chr10	11065001	11105000	39999	4
Deletion	Chr11	11072001	11096000	23999	LOC_Os11g19610
Deletion	Chr9	11076001	11108000	31999	6
Deletion	Chr3	11095001	11128000	32999	4
Deletion	Chr4	11096001	11145000	48999	10
Deletion	Chr10	11132001	11183000	50999	7
Deletion	Chr1	11137001	11158000	20999	4
Deletion	Chr12	11166001	11177000	10999	3
Deletion	Chr12	11211001	11235000	23999	LOC_Os12g19370
Deletion	Chr10	11215001	11248000	32999	6
Deletion	Chr2	11247001	11288000	40999	5
Deletion	Chr12	11255001	11280000	24999	2
Deletion	Chr9	11271001	11314000	42999	8
Deletion	Chr10	11286001	11307000	20999	3
Deletion	Chr11	11302001	11332000	29999	8
Deletion	Chr4	11316001	11338000	21999	2
Deletion	Chr3	11336001	11354000	17999	4
Deletion	Chr12	11355001	11373000	17999	2
Deletion	Chr4	11395001	11423000	27999	7
Deletion	Chr5	11396001	11421000	24999	3
Deletion	Chr11	11421001	11434000	12999	3
Deletion	Chr7	11422001	11442000	19999	4
Deletion	Chr4	11468001	11543000	74999	8
Deletion	Chr11	11481001	11537000	55999	9
Deletion	Chr1	11511001	11550000	38999	6
Deletion	Chr5	11642001	11654000	11999	LOC_Os05g20150
Deletion	Chr2	11654001	11680000	25999	2
Deletion	Chr8	11671001	11683000	11999	3
Deletion	Chr10	11687001	11706000	18999	3
Deletion	Chr9	11710001	11729000	18999	5
Deletion	Chr1	11718001	11737000	18999	3
Deletion	Chr12	11755001	11781000	25999	2
Deletion	Chr8	11803001	11831000	27999	6
Deletion	Chr4	11808001	11824000	15999	3
Deletion	Chr7	11815066	11815067	1
Deletion	Chr12	11826001	11860000	33999	4
Deletion	Chr6	11843001	11859000	15999	4
Deletion	Chr10	11847001	11870000	22999	5
Deletion	Chr4	11857001	11886000	28999	2
Deletion	Chr5	11908001	12010000	101999	15
Deletion	Chr9	11972001	12052000	79999	13
Deletion	Chr1	11981001	12003000	21999	2
Deletion	Chr6	11988001	12023000	34999	4
Deletion	Chr3	12000001	12020000	19999	4
Deletion	Chr6	12048001	12071000	22999	3
Deletion	Chr10	12049001	12072000	22999	3
Deletion	Chr6	12112001	12175000	62999	12
Deletion	Chr10	12131001	12191000	59999	7
Deletion	Chr2	12155001	12182000	26999	5
Deletion	Chr9	12168001	12187000	18999	2
Deletion	Chr5	12222001	12245000	22999	3
Deletion	Chr4	12224001	12256000	31999	5
Deletion	Chr3	12233001	12257000	23999	3
Deletion	Chr12	12246001	12260000	13999	3
Deletion	Chr4	12272001	12483000	210999	37
Deletion	Chr6	12289001	12319000	29999	8
Deletion	Chr12	12308001	12332000	23999	6
Deletion	Chr12	12374001	12394000	19999	3
Deletion	Chr10	12400001	12415000	14999	3
Deletion	Chr2	12419001	12454000	34999	3
Deletion	Chr4	12487001	12513000	25999	4
Deletion	Chr7	12550001	12565000	14999	4
Deletion	Chr4	12558001	12624000	65999	16
Deletion	Chr12	12608001	12622000	13999	9
Deletion	Chr4	12631001	12720000	88999	16
Deletion	Chr7	12651308	12651309	1
Deletion	Chr10	12683001	12713000	29999	3
Deletion	Chr10	12730001	12752000	21999	6
Deletion	Chr7	12746001	12773000	26999	4
Deletion	Chr2	12757001	12837000	79999	11
Deletion	Chr4	12763001	12778000	14999	3
Deletion	Chr4	12798001	12828000	29999	5
Deletion	Chr12	12815001	12839000	23999	5
Deletion	Chr5	12828001	12843000	14999	2
Deletion	Chr9	12840001	12876000	35999	3
Deletion	Chr3	12870001	12889000	18999	3
Deletion	Chr6	12890001	12906000	15999	3
Deletion	Chr1	12903001	12913000	9999
Deletion	Chr11	12930001	12961000	30999	4
Deletion	Chr7	12936001	12960000	23999	2
Deletion	Chr3	12971001	13006000	34999	3
Deletion	Chr5	13038001	13073000	34999	3
Deletion	Chr6	13053001	13090000	36999	8
Deletion	Chr7	13082001	13120000	37999	6
Deletion	Chr11	13128001	13140000	11999	3
Deletion	Chr1	13152001	13166000	13999	2
Deletion	Chr6	13167001	13187000	19999	4
Deletion	Chr1	13215001	13230000	14999	4
Deletion	Chr10	13236001	13252000	15999	2
Deletion	Chr6	13254001	13270000	15999	3
Deletion	Chr4	13264001	13301000	36999	6
Deletion	Chr9	13297001	13343000	45999	7
Deletion	Chr10	13332001	13349000	16999	3
Deletion	Chr7	13352001	13371000	18999	4
Deletion	Chr11	13371001	13380000	8999	LOC_Os11g23736
Deletion	Chr11	13412001	13455000	42999	5
Deletion	Chr12	13420001	13432000	11999	4
Deletion	Chr5	13437001	13459000	21999	2
Deletion	Chr4	13453001	13528000	74999	10
Deletion	Chr7	13479001	13569000	89999	10
Deletion	Chr2	13506001	13566000	59999	10
Deletion	Chr11	13539001	13557000	17999	3
Deletion	Chr6	13566001	13582000	15999	4
Deletion	Chr5	13579001	13595000	15999	2
Deletion	Chr12	13581001	13615000	33999	6
Deletion	Chr7	13594001	13616000	21999	4
Deletion	Chr8	13606001	13620000	13999	4
Deletion	Chr3	13612001	13627000	14999	4
Deletion	Chr6	13627001	13647000	19999	4
Deletion	Chr9	13671001	13687000	15999	3
Deletion	Chr8	13675001	13693000	17999	4
Deletion	Chr5	13678001	13716000	37999	6
Deletion	Chr6	13688001	13726000	37999	6
Deletion	Chr11	13725001	13757000	31999	2
Deletion	Chr5	13737001	13763000	25999	4
Deletion	Chr6	13752001	13770000	17999	3
Deletion	Chr9	13778001	13796000	17999	3
Deletion	Chr5	13788001	13804000	15999	2
Deletion	Chr2	13819001	13830000	10999
Deletion	Chr7	13827001	13863000	35999	5
Deletion	Chr6	13832001	13900000	67999	10
Deletion	Chr2	13853001	13884000	30999	6
Deletion	Chr6	13929001	13973000	43999	8
Deletion	Chr9	13938001	13971000	32999	4
Deletion	Chr5	13967001	13986000	18999	LOC_Os05g24410
Deletion	Chr2	13987001	14003000	15999	4
Deletion	Chr7	14072001	14109000	36999	8
Deletion	Chr5	14101001	14118000	16999	5
Deletion	Chr6	14127001	14180000	52999	8
Deletion	Chr11	14139001	14247000	107999	18
Deletion	Chr8	14189001	14206000	16999	2
Deletion	Chr6	14225001	14342000	116999	14
Deletion	Chr4	14235001	14258000	22999	4
Deletion	Chr1	14257001	14270000	12999	4
Deletion	Chr11	14288001	14303000	14999	4
Deletion	Chr1	14310001	14329000	18999	4
Deletion	Chr7	14314001	14336000	21999	3
Deletion	Chr5	14395001	14408000	12999	5
Deletion	Chr12	14398001	14472000	73999	13
Deletion	Chr9	14415001	14425000	9999	2
Deletion	Chr6	14424001	14451000	26999	2
Deletion	Chr5	14432001	14445000	12999	4
Deletion	Chr6	14479001	14504000	24999	4
Deletion	Chr5	14490001	14520000	29999	6
Deletion	Chr12	14519001	14563000	43999	5
Deletion	Chr6	14521001	14544000	22999	4
Deletion	Chr1	14572001	14604000	31999	5
Deletion	Chr2	14632001	14662000	29999	5
Deletion	Chr2	14700001	14775000	74999	10
Deletion	Chr5	14743001	14771000	27999	3
Deletion	Chr10	14779001	14797000	17999	3
Deletion	Chr6	14798001	14856000	57999	9
Deletion	Chr9	14880001	14902000	21999	3
Deletion	Chr6	14882001	14937000	54999	7
Deletion	Chr3	14883001	14913000	29999	6
Deletion	Chr2	14920001	14939000	18999	3
Deletion	Chr7	14931001	15003000	71999	9
Deletion	Chr12	14932153	14932154	1
Deletion	Chr6	14988001	15056000	67999	14
Deletion	Chr2	14992001	15017000	24999	2
Deletion	Chr2	15032001	15069000	36999	6
Deletion	Chr5	15048001	15194000	145999	29
Deletion	Chr4	15054001	15079000	24999	4
Deletion	Chr12	15179001	15312000	132999	14
Deletion	Chr2	15218001	15324000	105999	13
Deletion	Chr8	15302154	15302155	1
Deletion	Chr5	15320001	15355000	34999	6
Deletion	Chr1	15323001	15339000	15999	3
Deletion	Chr12	15331001	15380000	48999	5
Deletion	Chr3	15344001	15356000	11999	2
Deletion	Chr2	15345001	15379000	33999	8
Deletion	Chr11	15347001	15401000	53999	2
Deletion	Chr1	15402001	15426000	23999	4
Deletion	Chr7	15420001	15443000	22999	3
Deletion	Chr11	15458001	15497000	38999	4
Deletion	Chr2	15515001	15533000	17999	10
Deletion	Chr7	15527001	15549000	21999	4
Deletion	Chr6	15531001	15571000	39999	7
Deletion	Chr12	15539770	15539772	2
Deletion	Chr8	15577001	15603000	25999	3
Deletion	Chr9	15588001	15621000	32999	5
Deletion	Chr11	15638001	15704000	65999	9
Deletion	Chr5	15646001	15663000	16999	LOC_Os05g27120
Deletion	Chr7	15733001	15766000	32999	3
Deletion	Chr3	15741001	15760000	18999	4
Deletion	Chr6	15746001	15780000	33999	5
Deletion	Chr8	15748001	15777000	28999	6
Deletion	Chr2	15778001	15792000	13999	3
Deletion	Chr5	15779001	15795000	15999	2
Deletion	Chr8	15790001	15813000	22999	3
Deletion	Chr7	15797001	15822000	24999	4
Deletion	Chr6	15801001	15823000	21999	2
Deletion	Chr4	15804001	15833000	28999	LOC_Os04g26940
Deletion	Chr3	15806001	15823000	16999	3
Deletion	Chr2	15834001	15852000	17999	7
Deletion	Chr12	15858001	15893000	34999	2
Deletion	Chr7	15862001	15882000	19999	3
Deletion	Chr1	15885001	15906000	20999	3
Deletion	Chr5	15895001	15906000	10999	LOC_Os05g28200
Deletion	Chr1	15925001	15987000	61999	11
Deletion	Chr4	15934001	15975000	40999	5
Deletion	Chr12	15952001	15971000	18999	4
Deletion	Chr11	15966001	15990000	23999	5
Deletion	Chr7	15970001	16002000	31999	4
Deletion	Chr8	16008001	16022000	13999	3
Deletion	Chr11	16014001	16041000	26999	6
Deletion	Chr4	16022001	16077000	54999	8
Deletion	Chr11	16061001	16091000	29999	8
Deletion	Chr6	16078001	16096000	17999	3
Deletion	Chr12	16107001	16149000	41999	6
Deletion	Chr1	16111001	16142000	30999	6
Deletion	Chr4	16147001	16175000	27999	6
Deletion	Chr4	16206001	16221000	14999	2
Deletion	Chr3	16221001	16235000	13999	3
Deletion	Chr3	16278001	16297000	18999	3
Deletion	Chr2	16311001	16333000	21999	4
Deletion	Chr6	16312001	16330000	17999	2
Deletion	Chr4	16328110	16328111	1
Deletion	Chr12	16334001	16383000	48999	9
Deletion	Chr1	16348001	16388000	39999	6
Deletion	Chr7	16361001	16437000	75999	11
Deletion	Chr12	16392001	16426000	33999	6
Deletion	Chr11	16460001	16535000	74999	9
Deletion	Chr10	16490001	16536000	45999	9
Deletion	Chr1	16492001	16513000	20999	4
Deletion	Chr11	16496626	16496636	10
Deletion	Chr5	16516001	16537000	20999	3
Deletion	Chr9	16519001	16541000	21999	4
Deletion	Chr6	16546001	16620000	73999	8
Deletion	Chr4	16594001	16620000	25999	2
Deletion	Chr11	16595001	16629000	33999	3
Deletion	Chr1	16597001	16699000	101999	18
Deletion	Chr3	16606001	16621000	14999	3
Deletion	Chr3	16709001	16732000	22999	2
Deletion	Chr5	16721001	16774000	52999	8
Deletion	Chr11	16785001	16804000	18999	LOC_Os11g29190
Deletion	Chr10	16792001	16810000	17999	3
Deletion	Chr7	16849951	16849962	11
Deletion	Chr6	16864001	16880000	15999	3
Deletion	Chr5	16896090	16896093	3
Deletion	Chr6	16916001	16952000	35999	8
Deletion	Chr11	16917001	16934000	16999	2
Deletion	Chr4	16920001	16952000	31999	3
Deletion	Chr8	16930001	16968000	37999	5
Deletion	Chr7	16987001	17009000	21999	3
Deletion	Chr6	16992001	17005000	12999	3
Deletion	Chr3	17006001	17024000	17999	4
Deletion	Chr6	17030001	17064000	33999	3
Deletion	Chr2	17065001	17079000	13999	LOC_Os02g28980
Deletion	Chr7	17081620	17081623	3
Deletion	Chr1	17084001	17118000	33999	6
Deletion	Chr3	17153001	17167000	13999	3
Deletion	Chr2	17154001	17186000	31999	6
Deletion	Chr2	17213001	17231000	17999	4
Deletion	Chr8	17233001	17258000	24999	4
Deletion	Chr4	17237001	17281000	43999	5
Deletion	Chr7	17292001	17315000	22999	3
Deletion	Chr3	17311001	17326000	14999	3
Deletion	Chr6	17313135	17313159	24
Deletion	Chr6	17314001	17342000	27999	3
Deletion	Chr2	17350001	17380000	29999	3
Deletion	Chr1	17355001	17416000	60999	7
Deletion	Chr7	17359001	17383000	23999	4
Deletion	Chr4	17369001	17421000	51999	3
Deletion	Chr8	17381001	17402000	20999	4
Deletion	Chr5	17404001	17432000	27999	3
Deletion	Chr10	17417001	17452000	34999	5
Deletion	Chr4	17438001	17493000	54999	6
Deletion	Chr8	17456001	17477000	20999	3
Deletion	Chr8	17480001	17504000	23999	4
Deletion	Chr4	17497001	17526000	28999	3
Deletion	Chr7	17520001	17572000	51999	6
Deletion	Chr1	17541001	17582000	40999	8
Deletion	Chr11	17565222	17565223	1
Deletion	Chr8	17586001	17623000	36999	8
Deletion	Chr6	17633001	17712000	78999	11
Deletion	Chr7	17702001	17731000	28999	2
Deletion	Chr8	17776001	17838000	61999	10
Deletion	Chr7	17857001	17888000	30999	3
Deletion	Chr3	17992001	18012000	19999	2
Deletion	Chr3	18038001	18084000	45999	8
Deletion	Chr7	18068001	18136000	67999	10
Deletion	Chr8	18101001	18120000	18999	3
Deletion	Chr1	18104001	18115000	10999	LOC_Os01g33160
Deletion	Chr12	18163001	18186000	22999	4
Deletion	Chr1	18261001	18286000	24999	3
Deletion	Chr4	18282001	18301000	18999	3
Deletion	Chr4	18319001	18352000	32999	4
Deletion	Chr1	18331001	18382000	50999	8
Deletion	Chr5	18342001	18364000	21999	4
Deletion	Chr2	18353001	18364000	10999	LOC_Os02g31110
Deletion	Chr10	18455001	18509000	53999	8
Deletion	Chr7	18484001	18507000	22999	5
Deletion	Chr4	18569001	18587000	17999	LOC_Os04g31140
Deletion	Chr2	18599001	18612000	12999	2
Deletion	Chr5	18600001	18650000	49999	4
Deletion	Chr4	18619001	18641000	21999	4
Deletion	Chr8	18644001	18674000	29999	3
Deletion	Chr7	18651001	18673000	21999	3
Deletion	Chr4	18653001	18710000	56999	10
Deletion	Chr5	18663001	18687000	23999	3
Deletion	Chr8	18710001	18753000	42999	6
Deletion	Chr3	18798001	18809000	10999	3
Deletion	Chr7	18807001	18839000	31999	6
Deletion	Chr3	18844897	18844898	1
Deletion	Chr8	18848001	18859000	10999	2
Deletion	Chr1	18945001	18974000	28999	5
Deletion	Chr3	19002001	19351000	348999	61
Deletion	Chr1	19013001	19022000	8999	2
Deletion	Chr1	19055001	19073000	17999	4
Deletion	Chr8	19066001	19112000	45999	5
Deletion	Chr7	19136001	19150000	13999	4
Deletion	Chr1	19140001	19170000	29999	6
Deletion	Chr8	19142001	19168000	25999	5
Deletion	Chr1	19261001	19318000	56999	5
Deletion	Chr7	19293001	19314000	20999	4
Deletion	Chr12	19334001	19422000	87999	10
Deletion	Chr1	19403001	19435000	31999	4
Deletion	Chr1	19491001	19513000	21999	4
Deletion	Chr7	19514001	19534000	19999	4
Deletion	Chr2	19527001	19566000	38999	7
Deletion	Chr5	19543001	19574000	30999	2
Deletion	Chr9	19558001	19586000	27999	7
Deletion	Chr12	19604001	19622000	17999	2
Deletion	Chr3	19648001	19668000	19999	3
Deletion	Chr6	19672001	19688000	15999	3
Deletion	Chr1	19700001	19728000	27999	4
Deletion	Chr1	19704553	19704554	1
Deletion	Chr1	19776001	19793000	16999	6
Deletion	Chr2	19810001	19858000	47999	6
Deletion	Chr6	19879001	19889000	9999	LOC_Os06g34230
Deletion	Chr11	19913001	19928000	14999	LOC_Os11g34070
Deletion	Chr3	19930001	19948000	17999	18
Deletion	Chr9	19933001	19950000	16999	4
Deletion	Chr4	19934001	19976000	41999	3
Deletion	Chr9	20022001	20037000	14999	3
Deletion	Chr6	20030001	20050000	19999	3
Deletion	Chr11	20107001	20121000	13999	3
Deletion	Chr1	20190001	20230000	39999	6
Deletion	Chr3	20271001	20308000	36999	6
Deletion	Chr12	20290001	20311000	20999	7
Deletion	Chr10	20300001	20329000	28999	3
Deletion	Chr2	20312001	20357000	44999	5
Deletion	Chr3	20345001	20370000	24999	5
Deletion	Chr6	20402001	20453000	50999	9
Deletion	Chr1	20415001	20436000	20999	4
Deletion	Chr12	20435001	20452000	16999	2
Deletion	Chr11	20459001	20487000	27999	4
Deletion	Chr1	20495001	20576000	80999	9
Deletion	Chr4	20576001	20594000	17999	3
Deletion	Chr3	20694001	20744000	49999	5
Deletion	Chr7	20781001	20802000	20999	5
Deletion	Chr11	20822001	20861000	38999	9
Deletion	Chr5	20877001	20896000	18999	5
Deletion	Chr9	20893001	20958000	64999	8
Deletion	Chr11	20901001	20939000	37999	5
Deletion	Chr2	20978312	20978323	11
Deletion	Chr2	20986153	20986159	6
Deletion	Chr6	21005001	21027000	21999	3
Deletion	Chr12	21113001	21128000	14999	LOC_Os12g34990
Deletion	Chr4	21136001	21152000	15999	2
Deletion	Chr7	21151001	21181000	29999	7
Deletion	Chr8	21178001	21221000	42999	9
Deletion	Chr1	21181001	21203000	21999	4
Deletion	Chr2	21200001	21220000	19999	2
Deletion	Chr11	21205001	21225000	19999	3
Deletion	Chr7	21232001	21247000	14999	3
Deletion	Chr11	21243001	21261000	17999	2
Deletion	Chr8	21257001	21296000	38999	4
Deletion	Chr6	21259001	21295000	35999	5
Deletion	Chr6	21266472	21266490	18
Deletion	Chr11	21278001	21286000	7999	LOC_Os11g36270
Deletion	Chr12	21295001	21307000	11999	2
Deletion	Chr3	21342001	21371000	28999	4
Deletion	Chr11	21352001	21367000	14999	2
Deletion	Chr8	21365001	21397000	31999	4
Deletion	Chr3	21476001	21533000	56999	9
Deletion	Chr9	21493001	21517000	23999	3
Deletion	Chr1	21496001	21528000	31999	3
Deletion	Chr3	21651001	21664000	12999	LOC_Os03g39220
Deletion	Chr10	21652001	21667000	14999	5
Deletion	Chr12	21678506	21678530	24	LOC_Os12g35650
Deletion	Chr4	21694001	21716000	21999	5
Deletion	Chr12	21734001	21765000	30999	3
Deletion	Chr12	21790001	21838000	47999	4
Deletion	Chr11	21800001	21860000	59999	7
Deletion	Chr7	21821001	21836000	14999	4
Deletion	Chr5	21828001	21904000	75999	13
Deletion	Chr12	21865001	21926000	60999	5
Deletion	Chr3	21870001	21885000	14999	5
Deletion	Chr8	21916001	21942000	25999	3
Deletion	Chr4	21970372	21970373	1
Deletion	Chr8	22006001	22063000	56999	9
Deletion	Chr7	22015001	22042000	26999	4
Deletion	Chr12	22020001	22039000	18999
Deletion	Chr2	22107001	22141000	33999	6
Deletion	Chr9	22254001	22274000	19999	7
Deletion	Chr7	22291001	22316000	24999	4
Deletion	Chr2	22302001	22344000	41999	5
Deletion	Chr3	22342001	22382000	39999	8
Deletion	Chr5	22389001	22417000	27999	7
Deletion	Chr9	22451001	22497000	45999	6
Deletion	Chr3	22452001	22470000	17999	3
Deletion	Chr12	22489001	22505000	15999	2
Deletion	Chr4	22571001	22598000	26999	3
Deletion	Chr1	22573001	22592000	18999	5
Deletion	Chr12	22576001	22595000	18999	5
Deletion	Chr9	22601001	22632000	30999	5
Deletion	Chr7	22687001	22766000	78999	11
Deletion	Chr1	22705001	22727000	21999	3
Deletion	Chr3	22730001	22755000	24999	5
Deletion	Chr2	22773001	22786000	12999	4
Deletion	Chr8	22873001	22893000	19999	3
Deletion	Chr5	22927001	22950000	22999	4
Deletion	Chr2	22956001	22976000	19999	5
Deletion	Chr11	22991001	23023000	31999	5
Deletion	Chr4	23043001	23064000	20999	2
Deletion	Chr8	23121001	23145000	23999	4
Deletion	Chr3	23126868	23126870	2
Deletion	Chr11	23272001	23312000	39999	7
Deletion	Chr3	23305001	23322000	16999	2
Deletion	Chr11	23384001	23438000	53999	10
Deletion	Chr5	23541001	23584000	42999	8
Deletion	Chr8	23574001	23596000	21999	6
Deletion	Chr7	23631001	23663000	31999	4
Deletion	Chr2	23652001	23701000	48999	9
Deletion	Chr1	23666001	23690000	23999	3
Deletion	Chr5	23698001	23719000	20999	3
Deletion	Chr11	23781001	23797000	15999	2
Deletion	Chr7	23809001	23849000	39999	8
Deletion	Chr6	23853001	23874000	20999	3
Deletion	Chr2	23920001	23941000	20999
Deletion	Chr11	23961001	23989000	27999	3
Deletion	Chr7	23962001	23988000	25999	4
Deletion	Chr11	24067001	24092000	24999	5
Deletion	Chr3	24077001	24110000	32999	8
Deletion	Chr12	24129001	24139000	9999	2
Deletion	Chr2	24149001	24173000	23999	5
Deletion	Chr1	24199001	24211000	11999	4
Deletion	Chr6	24206001	24230000	23999	7
Deletion	Chr12	24257001	24374000	116999	11
Deletion	Chr8	24279001	24301000	21999	6
Deletion	Chr12	24387001	24404000	16999	3
Deletion	Chr8	24401001	24439000	37999	7
Deletion	Chr6	24414001	24428000	13999	LOC_Os06g41150
Deletion	Chr1	24419001	24438000	18999	3
Deletion	Chr12	24425001	24447000	21999	3
Deletion	Chr3	24484001	24512000	27999	2
Deletion	Chr5	24502001	24521000	18999	4
Deletion	Chr8	24507001	24531000	23999	4
Deletion	Chr4	24535001	24562000	26999	9
Deletion	Chr3	24555001	24575000	19999	4
Deletion	Chr6	24624001	24665000	40999	5
Deletion	Chr11	24722001	24767000	44999	8
Deletion	Chr4	24727001	24756000	28999	7
Deletion	Chr8	24732001	24755000	22999	4
Deletion	Chr2	24841001	24863000	21999	2
Deletion	Chr11	24864001	24898000	33999	7
Deletion	Chr12	24887001	24900000	12999	2
Deletion	Chr11	24910001	24936000	25999	3
Deletion	Chr1	25038001	25068000	29999	6
Deletion	Chr11	25044001	25056000	11999	LOC_Os11g42190
Deletion	Chr4	25081001	25099000	17999	LOC_Os04g42840
Deletion	Chr5	25190001	25218000	27999	5
Deletion	Chr4	25358001	25377000	18999	5
Deletion	Chr7	25402001	25419000	16999	4
Deletion	Chr11	25414001	25432000	17999	3
Deletion	Chr6	25435001	25510000	74999	10
Deletion	Chr8	25538001	25566000	27999	5
Deletion	Chr8	25592001	25609000	16999	5
Deletion	Chr11	25666001	25692000	25999	3
Deletion	Chr4	25701001	25738000	36999	9
Deletion	Chr8	25714001	25779000	64999	12
Deletion	Chr4	25898001	25915000	16999	3
Deletion	Chr5	26024001	26046000	21999	4
Deletion	Chr11	26076001	26103000	26999	4
Deletion	Chr4	26078001	26109000	30999	9
Deletion	Chr5	26101001	26146000	44999	7
Deletion	Chr3	26158001	26180000	21999	2
Deletion	Chr3	26232001	26253000	20999	6
Deletion	Chr12	26236001	26266000	29999
Deletion	Chr1	26379274	26379275	1
Deletion	Chr3	26387001	26411000	23999	4
Deletion	Chr7	26420001	26449000	28999	5
Deletion	Chr11	26426001	26448000	21999	3
Deletion	Chr8	26453001	26481000	27999	2
Deletion	Chr5	26477001	26500000	22999	5
Deletion	Chr7	26485001	26509000	23999	4
Deletion	Chr11	26586001	26602000	15999	LOC_Os11g44014
Deletion	Chr11	26621001	26643000	21999	6
Deletion	Chr4	26649001	26668000	18999	4
Deletion	Chr5	26829001	26860000	30999	9
Deletion	Chr7	26890001	26912000	21999	4
Deletion	Chr3	27024001	27051000	26999	3
Deletion	Chr7	27077001	27092000	14999	2
Deletion	Chr2	27093001	27141000	47999	10
Deletion	Chr7	27173001	27210000	36999	5
Deletion	Chr1	27259001	27276000	16999	5
Deletion	Chr8	27271001	27287000	15999	2
Deletion	Chr6	27299001	27322000	22999	5
Deletion	Chr7	27367001	27444000	76999	12
Deletion	Chr8	27395001	27431000	35999	5
Deletion	Chr7	27510001	27527000	16999	4
Deletion	Chr4	27598001	27621000	22999	4
Deletion	Chr3	27663001	27677000	13999	3
Deletion	Chr2	27677001	27697000	19999	3
Deletion	Chr6	27681001	27697000	15999	5
Deletion	Chr4	27687001	27710000	22999	6
Deletion	Chr5	27772001	27804000	31999	8
Deletion	Chr8	27796001	27816000	19999	4
Deletion	Chr2	27882001	27915000	32999	6
Deletion	Chr3	28040001	28062000	21999	7
Deletion	Chr1	28071001	28092000	20999	5
Deletion	Chr2	28106001	28120000	13999	3
Deletion	Chr3	28222001	28242000	19999	5
Deletion	Chr4	28225001	28258000	32999	2
Deletion	Chr1	28341001	28370000	28999	5
Deletion	Chr4	28373001	28394000	20999	2
Deletion	Chr3	28408001	28425000	16999	3
Deletion	Chr5	28588001	28611000	22999	5
Deletion	Chr5	28621001	28637000	15999	5
Deletion	Chr7	28649001	28671000	21999	5
Deletion	Chr4	28720001	28745000	24999	6
Deletion	Chr3	28722001	28737000	14999	2
Deletion	Chr6	28756001	28812000	55999	13
Deletion	Chr2	28763808	28763811	3
Deletion	Chr7	28803001	28841000	37999	4
Deletion	Chr2	28917001	28938000	20999	5
Deletion	Chr2	29008001	29065000	56999	8
Deletion	Chr3	29085001	29116000	30999	4
Deletion	Chr5	29100001	29119000	18999	LOC_Os05g50850
Deletion	Chr6	29154001	29183000	28999	6
Deletion	Chr5	29164001	29196000	31999	4
Deletion	Chr1	29400001	29424000	23999	4
Deletion	Chr4	29410001	29433000	22999	5
Deletion	Chr1	29443001	29461000	17999	4
Deletion	Chr3	29484001	29511000	26999	2
Deletion	Chr4	29527001	29547000	19999	5
Deletion	Chr3	29639001	29658000	18999	2
Deletion	Chr2	29761001	29780000	18999	LOC_Os02g48990
Deletion	Chr1	29785001	29812000	26999	6
Deletion	Chr2	30019001	30039000	19999	4
Deletion	Chr1	30023001	30046000	22999	5
Deletion	Chr3	30116001	30173000	56999	10
Deletion	Chr4	30179001	30223000	43999	7
Deletion	Chr4	30259001	30272000	12999	4
Deletion	Chr6	30428001	30445000	16999	4
Deletion	Chr4	30593001	30626000	32999	7
Deletion	Chr4	30711001	30769000	57999	8
Deletion	Chr3	30783001	30807000	23999	5
Deletion	Chr6	30848001	30864000	15999	4
Deletion	Chr2	30896001	30909000	12999	3
Deletion	Chr4	30898001	30917000	18999	4
Deletion	Chr2	30938001	30970000	31999	4
Deletion	Chr3	30957001	30971000	13999	4
Deletion	Chr1	30983001	31009000	25999	4
Deletion	Chr2	31014001	31032000	17999	2
Deletion	Chr1	31211001	31244000	32999	6
Deletion	Chr1	31312001	31331000	18999	6
Deletion	Chr2	31463001	31483000	19999	3
Deletion	Chr4	31787001	31811000	23999	3
Deletion	Chr2	31819001	31860000	40999	10
Deletion	Chr1	32067001	32094000	26999	7
Deletion	Chr3	32217001	32233000	15999	3
Deletion	Chr1	32223001	32253000	29999	8
Deletion	Chr1	32373001	32392000	18999	4
Deletion	Chr1	32466001	32512000	45999	6
Deletion	Chr3	32514001	32544000	29999	5
Deletion	Chr3	32548842	32548851	9
Deletion	Chr1	32577001	32601000	23999	5
Deletion	Chr1	32622001	32652000	29999	2
Deletion	Chr1	32849001	32878000	28999	3
Deletion	Chr2	33017001	33038000	20999	4
Deletion	Chr2	33107001	33131000	23999	4
Deletion	Chr1	33289001	33308000	18999	2
Deletion	Chr2	33415001	33427000	11999	LOC_Os02g54624
Deletion	Chr2	33455001	33486000	30999	3
Deletion	Chr4	33978001	34035000	56999	12
Deletion	Chr2	34161001	34182000	20999	5
Deletion	Chr1	34214001	34251000	36999	4
Deletion	Chr3	34363001	34380000	16999	3
Deletion	Chr1	34382001	34406000	23999	5
Deletion	Chr3	34409001	34444000	34999	8
Deletion	Chr4	34471001	34496000	24999	2
Deletion	Chr3	34495001	34526000	30999	5
Deletion	Chr1	34538001	34564000	25999	5
Deletion	Chr4	34619001	34633000	13999	3
Deletion	Chr3	34685001	34698000	12999	3
Deletion	Chr3	34861001	34874000	12999	5
Deletion	Chr1	34919917	34919922	5
Deletion	Chr3	35188001	35217000	28999	8
Deletion	Chr1	35627001	35641000	13999	LOC_Os01g61610
Deletion	Chr3	35823001	35844000	20999	5
Deletion	Chr1	35877001	35930000	52999	11
Deletion	Chr1	36265001	36288000	22999	4
Deletion	Chr1	36751001	36786000	34999	3
Deletion	Chr1	37103001	37139000	35999	4
Deletion	Chr1	38231001	38249000	17999	3
Deletion	Chr1	38482001	38505000	22999	5
Deletion	Chr1	38705001	38744000	38999	7
Deletion	Chr1	39373001	39390000	16999	4
Deletion	Chr1	39596001	39630000	33999	4
Deletion	Chr1	40345001	40364000	18999	LOC_Os01g70740
Deletion	Chr1	40947001	40982000	34999	6
Deletion	Chr1	41062001	41079000	16999	4
Deletion	Chr1	41147001	41176000	28999	6
Deletion	Chr1	41240001	41294000	53999	2
Deletion	Chr1	41901001	41924000	22999	5
Deletion	Chr1	41976001	41999000	22999	5
Deletion	Chr1	42057001	42111000	53999	8
Deletion	Chr1	42206001	42239000	32999	6
Deletion	Chr1	42262001	42285000	22999	6

Insertions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	33984936	33984936	1
Insertion	Chr1	35280909	35280909	1
Insertion	Chr1	3773308	3773311	4
Insertion	Chr10	10142508	10142508	1
Insertion	Chr10	18986169	18986169	1
Insertion	Chr10	22612322	22612322	1
Insertion	Chr10	4934297	4934298	2
Insertion	Chr10	625903	625903	1
Insertion	Chr11	20377115	20377118	4
Insertion	Chr12	15878861	15878899	39
Insertion	Chr12	25928418	25928418	1
Insertion	Chr2	18231376	18231435	60
Insertion	Chr2	9207079	9207079	1
Insertion	Chr3	19759632	19759632	1
Insertion	Chr3	34840265	34840267	3
Insertion	Chr4	20755843	20755843	1
Insertion	Chr5	15349462	15349462	1
Insertion	Chr5	5186937	5186998	62
Insertion	Chr6	12159237	12159238	2
Insertion	Chr6	5599467	5599470	4
Insertion	Chr6	740872	740872	1
Insertion	Chr7	22241223	22241224	2
Insertion	Chr7	23468619	23468619	1
Insertion	Chr7	3933245	3933327	83	LOC_Os07g07830
Insertion	Chr7	4245128	4245235	108
Insertion	Chr8	17916507	17916507	1
Insertion	Chr8	23489010	23489012	3
Insertion	Chr8	26707774	26707775	2
Insertion	Chr8	9184146	9184148	3
Insertion	Chr9	11341172	11341172	1	LOC_Os09g18500
Insertion	Chr9	7422032	7422032	1	LOC_Os09g12890

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12529390	12539806
Inversion	Chr7	21822100	22022722	LOC_Os07g36470
Inversion	Chr7	21834591	22023019

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2988804	Chr1	29749611
Translocation	Chr9	4695129	Chr2	5420442
Translocation	Chr11	4845284	Chr4	30958422
Translocation	Chr6	6189181	Chr1	23011326	LOC_Os06g11670
Translocation	Chr6	6192930	Chr1	23011332
Translocation	Chr8	10034548	Chr1	17844084
Translocation	Chr12	16084999	Chr6	5454600
Translocation	Chr6	17051047	Chr2	27928596
Translocation	Chr11	17928335	Chr9	5981935
Translocation	Chr12	19259329	Chr5	22122063
Translocation	Chr8	19768599	Chr7	2440035

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