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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18288964	A-G	HOMO	INTERGENIC
SBS	Chr1	18621509	G-A	HET	INTERGENIC
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr1	28198570	C-T	HET	INTERGENIC
SBS	Chr1	34537978	C-A	HET	INTERGENIC
SBS	Chr1	34537980	T-A	HET	INTERGENIC
SBS	Chr1	34537993	G-A	HET	INTERGENIC
SBS	Chr10	11427416	G-A	HET	INTERGENIC
SBS	Chr11	2621675	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g05720
SBS	Chr12	1990486	G-A	HET	INTRON
SBS	Chr12	2091194	G-A	HET	INTERGENIC
SBS	Chr12	2091213	G-A	HET	INTERGENIC
SBS	Chr12	21744241	G-A	HET	INTERGENIC
SBS	Chr2	15276145	A-T	HOMO	INTRON
SBS	Chr2	15276146	A-T	HOMO	INTRON
SBS	Chr2	7570970	T-C	HET	INTERGENIC
SBS	Chr3	17598819	C-T	HET	INTERGENIC
SBS	Chr3	17954274	G-T	HET	INTERGENIC
SBS	Chr3	30188330	A-G	HOMO	UTR_3_PRIME
SBS	Chr3	6973619	T-A	HET	INTERGENIC
SBS	Chr3	8333095	C-T	HET	INTERGENIC
SBS	Chr4	24429411	C-T	HOMO	INTERGENIC
SBS	Chr5	12140270	C-T	HOMO	INTERGENIC
SBS	Chr5	14801228	G-C	HOMO	INTRON
SBS	Chr5	17212235	T-A	HOMO	INTRON
SBS	Chr5	17212236	G-A	HOMO	INTRON
SBS	Chr5	2841477	T-C	HOMO	INTERGENIC
SBS	Chr5	6779328	T-C	HET	INTERGENIC
SBS	Chr7	10587973	G-A	HET	INTERGENIC
SBS	Chr7	23837737	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr8	13439453	C-T	HET	INTERGENIC
SBS	Chr8	27746761	C-T	HOMO	INTERGENIC
SBS	Chr9	2208603	T-C	HET	INTRON
SBS	Chr9	2421331	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04540

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	30726	30728	2
Deletion	Chr11	904712	904728	16
Deletion	Chr3	2404430	2404432	2
Deletion	Chr9	2748231	2748246	15	LOC_Os09g05120
Deletion	Chr1	4106497	4106513	16
Deletion	Chr9	4819910	4819911	1
Deletion	Chr11	5129001	5167000	37999	8
Deletion	Chr4	5345561	5345573	12	LOC_Os04g09940
Deletion	Chr9	5755891	5755892	1
Deletion	Chr7	6384552	6384554	2
Deletion	Chr10	6479811	6479812	1
Deletion	Chr8	6836488	6836497	9
Deletion	Chr7	7576079	7576170	91
Deletion	Chr5	7853811	7853813	2
Deletion	Chr12	9705869	9705870	1
Deletion	Chr3	11458164	11458198	34
Deletion	Chr6	12165467	12165468	1
Deletion	Chr7	12175990	12175991	1
Deletion	Chr4	14111089	14111090	1
Deletion	Chr5	14189946	14190007	61
Deletion	Chr11	14358048	14358049	1	LOC_Os11g25200
Deletion	Chr3	14809336	14809337	1	LOC_Os03g25890
Deletion	Chr2	15296576	15296579	3
Deletion	Chr11	16179152	16179236	84
Deletion	Chr11	16179161	16179187	26
Deletion	Chr3	18608704	18608712	8
Deletion	Chr4	20546191	20546192	1
Deletion	Chr4	21362561	21362569	8
Deletion	Chr12	24805609	24805610	1
Deletion	Chr8	25351287	25351292	5
Deletion	Chr3	31563484	31563485	1	LOC_Os03g55480
Deletion	Chr2	33006858	33006860	2
Deletion	Chr1	34049175	34049176	1
Deletion	Chr3	34061138	34061155	17
Deletion	Chr2	34727471	34727475	4	LOC_Os02g56640
Deletion	Chr3	35328950	35329042	92
Deletion	Chr4	35493094	35493100	6

Insertions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18277414	18277433	20
Insertion	Chr1	31139013	31139013	1
Insertion	Chr1	36337021	36337022	2
Insertion	Chr1	39383077	39383077	1
Insertion	Chr1	8612246	8612247	2
Insertion	Chr10	11140452	11140452	1
Insertion	Chr10	22625204	22625205	2
Insertion	Chr10	23013436	23013447	12
Insertion	Chr10	6931474	6931474	1
Insertion	Chr3	22607473	22607484	12
Insertion	Chr3	30815278	30815281	4
Insertion	Chr3	31280028	31280037	10
Insertion	Chr4	17512339	17512339	1
Insertion	Chr4	5453520	5453523	4	LOC_Os04g10100
Insertion	Chr5	10152588	10152588	1
Insertion	Chr5	169904	169906	3
Insertion	Chr5	7413933	7414011	79
Insertion	Chr5	9504585	9504585	1
Insertion	Chr6	8656151	8656174	24
Insertion	Chr7	11399650	11399662	13	LOC_Os07g19250
Insertion	Chr7	17617229	17617318	90
Insertion	Chr7	6072669	6072670	2
Insertion	Chr8	12575994	12575994	1
Insertion	Chr8	18205386	18205391	6
Insertion	Chr8	24834151	24834152	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	38551352	38553087

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	12598601	Chr4	3152664
Translocation	Chr6	22249449	Chr4	20828281
Translocation	Chr12	27020465	Chr10	21613382	LOC_Os10g40324

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