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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21525133	A-G	HET
SBS	Chr2	10666626	C-T	HET
SBS	Chr3	3708508	A-T	HET
SBS	Chr3	5528095	G-A	HET
SBS	Chr3	17944944	C-T	HET
SBS	Chr3	19748915	C-G	HET
SBS	Chr3	20376327	G-A	HET
SBS	Chr3	30921528	C-A	HET
SBS	Chr4	3906948	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07340
SBS	Chr4	11896368	C-G	HET
SBS	Chr4	16876224	T-A	HET
SBS	Chr4	19447001	A-C	HET
SBS	Chr5	10457224	G-T	HET
SBS	Chr5	15067657	C-T	HET
SBS	Chr6	11195517	C-T	Homo
SBS	Chr6	21857520	G-T	HET
SBS	Chr7	18397932	C-T	HET
SBS	Chr8	1889224	C-T	HET
SBS	Chr8	9329791	T-C	Homo
SBS	Chr9	17273348	G-A	HET
SBS	Chr11	9787815	G-A	HET
SBS	Chr11	22270287	G-T	Homo
SBS	Chr12	1359054	C-T	HET
SBS	Chr12	24408202	C-T	HET

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1515001	1580000	64999	8
Deletion	Chr4	1585001	1741000	155999	20
Deletion	Chr10	3200903	3200913	10
Deletion	Chr4	3276458	3276461	3
Deletion	Chr7	5937469	5937476	7
Deletion	Chr10	8550255	8550262	7	LOC_Os10g17070
Deletion	Chr7	14683540	14683542	2
Deletion	Chr11	14787707	14787708	1
Deletion	Chr6	15609351	15609354	3
Deletion	Chr1	15855451	15855475	24
Deletion	Chr4	17196609	17196616	7
Deletion	Chr9	18400114	18400115	1
Deletion	Chr9	19432261	19432274	13
Deletion	Chr5	22101000	22101010	10	LOC_Os05g37750
Deletion	Chr10	22221779	22221780	1	LOC_Os10g41340
Deletion	Chr7	22348439	22348441	2
Deletion	Chr1	22406997	22406999	2	LOC_Os01g39730
Deletion	Chr6	26937172	26937173	1
Deletion	Chr8	27753338	27753339	1
Deletion	Chr4	29025993	29026003	10
Deletion	Chr2	29232091	29232094	3
Deletion	Chr3	29246527	29246555	28
Deletion	Chr6	30052106	30052114	8	LOC_Os06g49660
Deletion	Chr3	32260515	32260533	18
Deletion	Chr3	33252001	33331000	78999	16

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	1183129	1183129	1
Insertion	Chr5	277569	277571	3
Insertion	Chr5	20090488	20090489	2
Insertion	Chr9	21618822	21618823	2
Insertion	Chr12	57419	57420	2
Insertion	Chr1	12684453	12684474	22
Insertion	Chr9	16146205	16146218	14

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	19270705	19271149
Inversion	Chr5	19994888	20590531	2
Inversion	Chr5	19994910	20590533	2
Inversion	Chr4	25850415	26147765
Inversion	Chr4	25850427	26147767
Inversion	Chr1	41140226	41522045	LOC_Os01g71080

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	23707	Chr1	17266159	2
Translocation	Chr6	23994	Chr1	17266162	2
Translocation	Chr4	7545558	Chr1	32129092	LOC_Os04g13530
Translocation	Chr9	15074541	Chr6	4406867
Translocation	Chr3	25354383	Chr1	32550341
Translocation	Chr7	27234228	Chr1	5361945	2

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