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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11539312	C-G	HOMO	INTERGENIC
SBS	Chr1	15369181	C-G	HET	INTERGENIC
SBS	Chr1	17407415	C-A	HET	INTERGENIC
SBS	Chr1	18189720	C-T	HET	INTRON
SBS	Chr1	28155487	A-G	HET	INTERGENIC
SBS	Chr10	18506666	A-C	HET	INTERGENIC
SBS	Chr10	21451968	T-C	HET	INTERGENIC
SBS	Chr10	5092294	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g09440
SBS	Chr11	7587452	G-A	HOMO	START_GAINED
SBS	Chr12	17230069	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	17855807	G-A	HET	INTRON
SBS	Chr12	19768863	G-A	HET	INTERGENIC
SBS	Chr2	13406045	A-T	HET	INTERGENIC
SBS	Chr2	14199096	A-G	HET	INTERGENIC
SBS	Chr2	23417320	G-A	HET	INTERGENIC
SBS	Chr2	30483741	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g49890
SBS	Chr3	17141312	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g30050
SBS	Chr3	20829848	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	22939446	G-A	HOMO	UTR_3_PRIME
SBS	Chr4	22939447	T-A	HOMO	UTR_3_PRIME
SBS	Chr4	2373369	C-T	HOMO	INTERGENIC
SBS	Chr4	30104735	T-C	HET	INTERGENIC
SBS	Chr4	3934780	G-A	HET	INTERGENIC
SBS	Chr4	8286305	G-A	HET	INTERGENIC
SBS	Chr5	13211172	C-G	HET	INTERGENIC
SBS	Chr5	22662982	G-T	HOMO	INTERGENIC
SBS	Chr5	8021556	C-T	HET	INTERGENIC
SBS	Chr6	15553271	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g27470
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr6	22952548	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g38650
SBS	Chr6	2421030	C-T	HOMO	UTR_3_PRIME
SBS	Chr6	25823610	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42980
SBS	Chr7	8437630	T-C	HOMO	INTERGENIC
SBS	Chr8	24027564	C-A	HET	INTERGENIC
SBS	Chr9	14696441	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g24700
SBS	Chr9	14696442	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	16994292	G-A	HOMO	INTRON

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	357797	357803	6
Deletion	Chr1	706908	706925	17
Deletion	Chr1	1313385	1313386	1	LOC_Os01g03240
Deletion	Chr8	1441924	1441925	1
Deletion	Chr11	3984043	3984044	1
Deletion	Chr12	4434650	4434654	4
Deletion	Chr1	4555197	4555198	1
Deletion	Chr7	4613352	4613396	44
Deletion	Chr4	9253948	9253949	1
Deletion	Chr11	9365055	9365057	2
Deletion	Chr7	9373552	9373567	15
Deletion	Chr6	12006873	12006889	16
Deletion	Chr11	12039799	12039802	3
Deletion	Chr1	14574548	14574550	2	LOC_Os01g25710
Deletion	Chr6	16048427	16048428	1
Deletion	Chr5	16402269	16402283	14
Deletion	Chr6	17403001	17466000	62999	8
Deletion	Chr11	18674820	18674826	6
Deletion	Chr3	18777009	18777029	20
Deletion	Chr3	19325980	19325994	14
Deletion	Chr10	19992001	20015000	22999	5
Deletion	Chr10	20017001	20041000	23999	5
Deletion	Chr6	20074118	20074161	43
Deletion	Chr2	20265711	20265715	4
Deletion	Chr10	20738738	20738741	3
Deletion	Chr4	20755470	20755488	18
Deletion	Chr7	22531321	22531322	1
Deletion	Chr2	23340124	23340125	1
Deletion	Chr3	25435031	25435035	4
Deletion	Chr11	27810238	27810239	1
Deletion	Chr4	29698443	29698457	14
Deletion	Chr2	29764591	29764640	49
Deletion	Chr3	29970735	29970736	1

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19077681	19077684	4
Insertion	Chr10	15560826	15560826	1
Insertion	Chr10	164450	164450	1
Insertion	Chr10	21086097	21086097	1
Insertion	Chr10	6931474	6931474	1
Insertion	Chr11	25683696	25683696	1
Insertion	Chr12	4929122	4929122	1	LOC_Os12g09400
Insertion	Chr3	29972224	29972225	2
Insertion	Chr3	7417100	7417100	1
Insertion	Chr4	11295488	11295489	2
Insertion	Chr5	12204265	12204265	1
Insertion	Chr5	18792768	18792768	1
Insertion	Chr6	10294224	10294224	1
Insertion	Chr6	1282373	1282373	1
Insertion	Chr6	14478543	14478543	1
Insertion	Chr6	19955894	19955894	1
Insertion	Chr7	1795177	1795178	2
Insertion	Chr8	22256365	22256365	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12289064	12981062
Inversion	Chr12	12298326	12981254
Inversion	Chr9	14289240	14653159
Inversion	Chr6	16700991	17471924
Inversion	Chr10	19991248	20556602
Inversion	Chr10	20041324	20556605
Inversion	Chr1	27387406	28045183	LOC_Os01g47840

Translocations: 17

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	202799	Chr1	18687435
Translocation	Chr9	1487674	Chr8	23352813	LOC_Os09g03110
Translocation	Chr12	2801822	Chr1	18684100	LOC_Os01g33960
Translocation	Chr9	3770059	Chr4	5840894
Translocation	Chr5	6370657	Chr4	16080158
Translocation	Chr8	9908968	Chr4	14224738
Translocation	Chr12	10482998	Chr7	29118623	LOC_Os07g48630
Translocation	Chr11	13710945	Chr8	11690102
Translocation	Chr12	13966775	Chr1	19217178
Translocation	Chr5	14394164	Chr4	26106842
Translocation	Chr12	14626560	Chr4	13431729
Translocation	Chr10	15981375	Chr3	6178645
Translocation	Chr12	19859914	Chr1	29752298
Translocation	Chr10	20040369	Chr1	27384011
Translocation	Chr10	20041311	Chr1	28045169
Translocation	Chr3	21936411	Chr2	18250504
Translocation	Chr11	26207283	Chr2	30805327

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