Search Results
Mutant Information |
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Mutant Name | FN3092-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3092-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 32
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 8746158 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr1 | 36462144 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 37873882 | G-T | HOMO | INTERGENIC | |
SBS | Chr1 | 39624182 | G-A | HOMO | INTRON | |
SBS | Chr1 | 42681420 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 2791140 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 3598467 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 14345689 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g24730 |
SBS | Chr2 | 28628308 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g46920 |
SBS | Chr2 | 29668049 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g48450 |
SBS | Chr3 | 12048311 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g21140 |
SBS | Chr3 | 23123639 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 28043010 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 4052847 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 7487955 | G-T | HET | INTERGENIC | |
SBS | Chr4 | 17369099 | A-T | HET | INTERGENIC | |
SBS | Chr4 | 23242585 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g39110 |
SBS | Chr4 | 34014887 | G-A | HOMO | INTRON | |
SBS | Chr5 | 11098820 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 14189204 | T-C | HOMO | INTERGENIC | |
SBS | Chr6 | 21908762 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g37090 |
SBS | Chr8 | 12324413 | C-T | HOMO | INTERGENIC | |
SBS | Chr9 | 1060504 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr9 | 7412797 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 11299730 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g18420 |
SBS | Chr10 | 9956105 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 11014226 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g21510 |
SBS | Chr11 | 11642319 | G-A | HOMO | STOP_GAINED | LOC_Os11g20150 |
SBS | Chr11 | 15406909 | A-G | HOMO | SYNONYMOUS_CODING | |
SBS | Chr11 | 18680363 | G-A | HOMO | INTERGENIC | |
SBS | Chr12 | 143516 | T-A | HOMO | INTERGENIC | |
SBS | Chr12 | 20325124 | A-T | HET | INTERGENIC |
Deletions: 362
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr1 | 128202 | 128204 | 2 | |
Deletion | Chr4 | 135001 | 163000 | 27999 | 3 |
Deletion | Chr10 | 582001 | 640000 | 57999 | 8 |
Deletion | Chr9 | 603001 | 627000 | 23999 | 2 |
Deletion | Chr10 | 702001 | 712000 | 9999 | LOC_Os10g02120 |
Deletion | Chr8 | 903001 | 922000 | 18999 | LOC_Os08g02350 |
Deletion | Chr7 | 928001 | 949000 | 20999 | 6 |
Deletion | Chr11 | 1020001 | 1051000 | 30999 | 7 |
Deletion | Chr5 | 1031001 | 1063000 | 31999 | 5 |
Deletion | Chr9 | 1188001 | 1213000 | 24999 | 3 |
Deletion | Chr4 | 1439001 | 1456000 | 16999 | 6 |
Deletion | Chr4 | 1477001 | 1506000 | 28999 | 4 |
Deletion | Chr12 | 1706001 | 1735000 | 28999 | 8 |
Deletion | Chr3 | 1878001 | 1898000 | 19999 | 5 |
Deletion | Chr12 | 2690001 | 2705000 | 14999 | 3 |
Deletion | Chr3 | 2733001 | 2764000 | 30999 | 4 |
Deletion | Chr6 | 2745001 | 2756000 | 10999 | 2 |
Deletion | Chr9 | 2820208 | 2820209 | 1 | |
Deletion | Chr8 | 3055001 | 3095000 | 39999 | 7 |
Deletion | Chr10 | 3060001 | 3102000 | 41999 | 5 |
Deletion | Chr4 | 3095001 | 3152000 | 56999 | 8 |
Deletion | Chr12 | 3131001 | 3145000 | 13999 | LOC_Os12g06500 |
Deletion | Chr6 | 3234001 | 3256000 | 21999 | 2 |
Deletion | Chr9 | 3302001 | 3336000 | 33999 | 4 |
Deletion | Chr12 | 3366001 | 3387000 | 20999 | 3 |
Deletion | Chr5 | 3469001 | 3476000 | 6999 | LOC_Os05g07070 |
Deletion | Chr11 | 3543001 | 3589000 | 45999 | 7 |
Deletion | Chr10 | 3642001 | 3659000 | 16999 | 2 |
Deletion | Chr9 | 3648509 | 3648511 | 2 | |
Deletion | Chr10 | 3680001 | 3696000 | 15999 | LOC_Os10g07030 |
Deletion | Chr9 | 3937001 | 3947000 | 9999 | 2 |
Deletion | Chr9 | 3998001 | 4033000 | 34999 | 4 |
Deletion | Chr9 | 4076001 | 4095000 | 18999 | 3 |
Deletion | Chr9 | 4173001 | 4189000 | 15999 | 2 |
Deletion | Chr9 | 4231001 | 4254000 | 22999 | 3 |
Deletion | Chr12 | 4292001 | 4330000 | 37999 | 9 |
Deletion | Chr6 | 4465001 | 4483000 | 17999 | 3 |
Deletion | Chr8 | 4484001 | 4499000 | 14999 | 3 |
Deletion | Chr12 | 4551001 | 4565000 | 13999 | 3 |
Deletion | Chr2 | 4676477 | 4676493 | 16 | |
Deletion | Chr9 | 4753001 | 4797000 | 43999 | 6 |
Deletion | Chr7 | 4827001 | 4889000 | 61999 | 10 |
Deletion | Chr9 | 4893445 | 4893446 | 1 | |
Deletion | Chr4 | 4981001 | 5007000 | 25999 | 4 |
Deletion | Chr12 | 5011740 | 5011833 | 93 | |
Deletion | Chr7 | 5020001 | 5070000 | 49999 | 5 |
Deletion | Chr8 | 5076001 | 5096000 | 19999 | 4 |
Deletion | Chr12 | 5126001 | 5151000 | 24999 | 3 |
Deletion | Chr4 | 5182001 | 5210000 | 27999 | 6 |
Deletion | Chr8 | 5278001 | 5301000 | 22999 | 4 |
Deletion | Chr12 | 5286001 | 5313000 | 26999 | 5 |
Deletion | Chr10 | 5443001 | 5465000 | 21999 | 2 |
Deletion | Chr11 | 5548782 | 5549201 | 419 | |
Deletion | Chr8 | 5634001 | 5658000 | 23999 | 3 |
Deletion | Chr11 | 5668001 | 5700000 | 31999 | 4 |
Deletion | Chr10 | 5718001 | 5736000 | 17999 | 3 |
Deletion | Chr5 | 5830001 | 5841000 | 10999 | LOC_Os05g10770 |
Deletion | Chr4 | 6014303 | 6014306 | 3 | |
Deletion | Chr6 | 6029001 | 6048000 | 18999 | 2 |
Deletion | Chr10 | 6092001 | 6104000 | 11999 | 2 |
Deletion | Chr9 | 6117001 | 6171000 | 53999 | 12 |
Deletion | Chr10 | 6181001 | 6219000 | 37999 | 6 |
Deletion | Chr3 | 6276001 | 6294000 | 17999 | 5 |
Deletion | Chr10 | 6286001 | 6321000 | 34999 | 6 |
Deletion | Chr2 | 6353001 | 6363000 | 9999 | |
Deletion | Chr1 | 6394375 | 6394383 | 8 | |
Deletion | Chr7 | 6508001 | 6535000 | 26999 | 4 |
Deletion | Chr4 | 6531001 | 6551000 | 19999 | 2 |
Deletion | Chr5 | 6558001 | 6570000 | 11999 | 2 |
Deletion | Chr9 | 6646001 | 6734000 | 87999 | 10 |
Deletion | Chr5 | 6668001 | 6696000 | 27999 | 3 |
Deletion | Chr9 | 6687649 | 6687650 | 1 | |
Deletion | Chr7 | 6760001 | 6822000 | 61999 | 9 |
Deletion | Chr7 | 6983001 | 7008000 | 24999 | LOC_Os07g12450 |
Deletion | Chr10 | 6987654 | 6987657 | 3 | |
Deletion | Chr4 | 7025001 | 7042000 | 16999 | 6 |
Deletion | Chr8 | 7059001 | 7088000 | 28999 | 2 |
Deletion | Chr7 | 7096001 | 7114000 | 17999 | 4 |
Deletion | Chr9 | 7156001 | 7170000 | 13999 | LOC_Os09g12500 |
Deletion | Chr9 | 7607388 | 7607390 | 2 | |
Deletion | Chr11 | 7668001 | 7692000 | 23999 | 3 |
Deletion | Chr5 | 7860001 | 7894000 | 33999 | 6 |
Deletion | Chr7 | 7862001 | 7876000 | 13999 | 3 |
Deletion | Chr7 | 7890001 | 7915000 | 24999 | 6 |
Deletion | Chr12 | 8116001 | 8204000 | 87999 | 11 |
Deletion | Chr4 | 8179604 | 8179605 | 1 | |
Deletion | Chr5 | 8229001 | 8251000 | 21999 | LOC_Os05g14540 |
Deletion | Chr12 | 8357001 | 8376000 | 18999 | 3 |
Deletion | Chr8 | 8369001 | 8380000 | 10999 | 2 |
Deletion | Chr5 | 8381001 | 8420000 | 38999 | 6 |
Deletion | Chr7 | 8386001 | 8408000 | 21999 | 3 |
Deletion | Chr11 | 8474001 | 8503000 | 28999 | 5 |
Deletion | Chr1 | 8509001 | 8519000 | 9999 | 2 |
Deletion | Chr7 | 8589001 | 8620000 | 30999 | 7 |
Deletion | Chr4 | 8604691 | 8604703 | 12 | LOC_Os04g15850 |
Deletion | Chr4 | 8769001 | 8817000 | 47999 | 8 |
Deletion | Chr7 | 8792001 | 8810000 | 17999 | 3 |
Deletion | Chr5 | 9010001 | 9033000 | 22999 | 4 |
Deletion | Chr8 | 9037001 | 9048000 | 10999 | LOC_Os08g14990 |
Deletion | Chr10 | 9048001 | 9133000 | 84999 | 10 |
Deletion | Chr6 | 9115001 | 9162000 | 46999 | 8 |
Deletion | Chr5 | 9195001 | 9222000 | 26999 | 3 |
Deletion | Chr11 | 9234001 | 9322000 | 87999 | 14 |
Deletion | Chr1 | 9364001 | 9373000 | 8999 | 2 |
Deletion | Chr7 | 9372001 | 9392000 | 19999 | 5 |
Deletion | Chr11 | 9504001 | 9550000 | 45999 | 4 |
Deletion | Chr5 | 9518001 | 9530000 | 11999 | LOC_Os05g16860 |
Deletion | Chr8 | 9534001 | 9566000 | 31999 | 8 |
Deletion | Chr11 | 9709001 | 9722000 | 12999 | 3 |
Deletion | Chr5 | 9713001 | 9744000 | 30999 | 8 |
Deletion | Chr1 | 9794554 | 9794593 | 39 | |
Deletion | Chr12 | 9894001 | 9914000 | 19999 | 3 |
Deletion | Chr11 | 9983001 | 10017000 | 33999 | 4 |
Deletion | Chr8 | 10024209 | 10024260 | 51 | |
Deletion | Chr11 | 10145001 | 10163000 | 17999 | LOC_Os11g18070 |
Deletion | Chr5 | 10322001 | 10359000 | 36999 | 5 |
Deletion | Chr8 | 10404001 | 10463000 | 58999 | 11 |
Deletion | Chr11 | 10527001 | 10610000 | 82999 | 8 |
Deletion | Chr4 | 10587001 | 10616000 | 28999 | 4 |
Deletion | Chr5 | 10626476 | 10626480 | 4 | |
Deletion | Chr11 | 10665001 | 10691000 | 25999 | 4 |
Deletion | Chr4 | 10728001 | 10778000 | 49999 | 8 |
Deletion | Chr7 | 10876001 | 10897000 | 20999 | 5 |
Deletion | Chr12 | 10965001 | 10999000 | 33999 | 7 |
Deletion | Chr8 | 10979001 | 10995000 | 15999 | 4 |
Deletion | Chr1 | 11011001 | 11039000 | 27999 | 2 |
Deletion | Chr9 | 11015001 | 11054000 | 38999 | 3 |
Deletion | Chr11 | 11073001 | 11104000 | 30999 | LOC_Os11g19610 |
Deletion | Chr3 | 11096001 | 11125000 | 28999 | 2 |
Deletion | Chr10 | 11122001 | 11180000 | 57999 | 8 |
Deletion | Chr2 | 11239001 | 11292000 | 52999 | 7 |
Deletion | Chr9 | 11268001 | 11301000 | 32999 | 6 |
Deletion | Chr11 | 11422001 | 11435000 | 12999 | 3 |
Deletion | Chr11 | 11474001 | 11540000 | 65999 | 11 |
Deletion | Chr1 | 11514001 | 11540000 | 25999 | 3 |
Deletion | Chr5 | 11639001 | 11654000 | 14999 | LOC_Os05g20320 |
Deletion | Chr1 | 11714001 | 11734000 | 19999 | 4 |
Deletion | Chr10 | 11725001 | 11736000 | 10999 | 2 |
Deletion | Chr12 | 11764001 | 11792000 | 27999 | 3 |
Deletion | Chr8 | 11807001 | 11831000 | 23999 | 5 |
Deletion | Chr12 | 11826001 | 11861000 | 34999 | 4 |
Deletion | Chr12 | 11875001 | 11892000 | 16999 | 2 |
Deletion | Chr1 | 11974001 | 12005000 | 30999 | 3 |
Deletion | Chr6 | 11998001 | 12026000 | 27999 | 4 |
Deletion | Chr3 | 12001001 | 12019000 | 17999 | 3 |
Deletion | Chr6 | 12046001 | 12073000 | 26999 | 3 |
Deletion | Chr12 | 12050462 | 12050626 | 164 | |
Deletion | Chr4 | 12068001 | 12094000 | 25999 | 4 |
Deletion | Chr6 | 12116001 | 12155000 | 38999 | 8 |
Deletion | Chr2 | 12159001 | 12182000 | 22999 | 4 |
Deletion | Chr3 | 12168001 | 12190000 | 21999 | 3 |
Deletion | Chr6 | 12281001 | 12318000 | 36999 | 8 |
Deletion | Chr4 | 12299001 | 12322000 | 22999 | 3 |
Deletion | Chr8 | 12612001 | 12634000 | 21999 | 2 |
Deletion | Chr5 | 12631001 | 12682000 | 50999 | 5 |
Deletion | Chr10 | 12688001 | 12713000 | 24999 | 3 |
Deletion | Chr11 | 12712001 | 12735000 | 22999 | 4 |
Deletion | Chr2 | 12763001 | 12783000 | 19999 | 3 |
Deletion | Chr3 | 12868001 | 12889000 | 20999 | 3 |
Deletion | Chr11 | 12926001 | 12964000 | 37999 | 5 |
Deletion | Chr5 | 13040001 | 13076000 | 35999 | 3 |
Deletion | Chr6 | 13063001 | 13086000 | 22999 | 5 |
Deletion | Chr4 | 13129001 | 13164000 | 34999 | 3 |
Deletion | Chr4 | 13257001 | 13296000 | 38999 | 6 |
Deletion | Chr1 | 13292490 | 13292491 | 1 | |
Deletion | Chr9 | 13322001 | 13343000 | 20999 | 4 |
Deletion | Chr7 | 13346001 | 13370000 | 23999 | 6 |
Deletion | Chr9 | 13387001 | 13451000 | 63999 | 14 |
Deletion | Chr11 | 13412001 | 13454000 | 41999 | 6 |
Deletion | Chr2 | 13529001 | 13565000 | 35999 | 8 |
Deletion | Chr11 | 13534001 | 13558000 | 23999 | 4 |
Deletion | Chr7 | 13598001 | 13611000 | 12999 | 2 |
Deletion | Chr2 | 13991001 | 14007000 | 15999 | 4 |
Deletion | Chr5 | 14100001 | 14117000 | 16999 | 4 |
Deletion | Chr12 | 14135001 | 14165000 | 29999 | 3 |
Deletion | Chr11 | 14142001 | 14248000 | 105999 | 19 |
Deletion | Chr12 | 14199001 | 14210000 | 10999 | 3 |
Deletion | Chr4 | 14237001 | 14257000 | 19999 | 3 |
Deletion | Chr11 | 14284001 | 14303000 | 18999 | 4 |
Deletion | Chr2 | 14368001 | 14421000 | 52999 | 11 |
Deletion | Chr12 | 14414105 | 14414106 | 1 | |
Deletion | Chr7 | 14428494 | 14428496 | 2 | |
Deletion | Chr3 | 14480001 | 14504000 | 23999 | 4 |
Deletion | Chr5 | 14491001 | 14518000 | 26999 | 6 |
Deletion | Chr1 | 14571001 | 14606000 | 34999 | 6 |
Deletion | Chr11 | 14639001 | 14665000 | 25999 | 6 |
Deletion | Chr7 | 14673001 | 14706000 | 32999 | 5 |
Deletion | Chr2 | 14699001 | 14731000 | 31999 | 4 |
Deletion | Chr5 | 14752001 | 14765000 | 12999 | LOC_Os05g25850 |
Deletion | Chr7 | 15036001 | 15043000 | 6999 | LOC_Os07g27120 |
Deletion | Chr4 | 15053001 | 15090000 | 36999 | 6 |
Deletion | Chr2 | 15060295 | 15060296 | 1 | |
Deletion | Chr6 | 15100001 | 15118000 | 17999 | 2 |
Deletion | Chr6 | 15147001 | 15156000 | 8999 | LOC_Os06g27800 |
Deletion | Chr4 | 15254471 | 15254488 | 17 | |
Deletion | Chr5 | 15319001 | 15350000 | 30999 | 6 |
Deletion | Chr1 | 15325001 | 15346000 | 20999 | 3 |
Deletion | Chr12 | 15330001 | 15378000 | 47999 | 5 |
Deletion | Chr3 | 15346001 | 15354000 | 7999 | 2 |
Deletion | Chr1 | 15404001 | 15423000 | 18999 | 3 |
Deletion | Chr5 | 15513001 | 15535000 | 21999 | 6 |
Deletion | Chr12 | 15530001 | 15543000 | 12999 | |
Deletion | Chr10 | 15546224 | 15546225 | 1 | |
Deletion | Chr12 | 15574001 | 15597000 | 22999 | 4 |
Deletion | Chr12 | 15618001 | 15637000 | 18999 | 3 |
Deletion | Chr11 | 15643001 | 15704000 | 60999 | 9 |
Deletion | Chr2 | 15833001 | 15853000 | 19999 | 2 |
Deletion | Chr12 | 15862001 | 15892000 | 29999 | 2 |
Deletion | Chr4 | 15896339 | 15896340 | 1 | |
Deletion | Chr1 | 15926001 | 15995000 | 68999 | 14 |
Deletion | Chr2 | 15932001 | 15947000 | 14999 | LOC_Os02g27440 |
Deletion | Chr4 | 15943001 | 15981000 | 37999 | 4 |
Deletion | Chr7 | 15970001 | 15990000 | 19999 | 2 |
Deletion | Chr4 | 16002001 | 16020000 | 17999 | 4 |
Deletion | Chr8 | 16009001 | 16031000 | 21999 | 4 |
Deletion | Chr6 | 16076001 | 16095000 | 18999 | 3 |
Deletion | Chr8 | 16084001 | 16102000 | 17999 | 2 |
Deletion | Chr2 | 16169001 | 16212000 | 42999 | 4 |
Deletion | Chr2 | 16316001 | 16336000 | 19999 | 4 |
Deletion | Chr12 | 16336001 | 16382000 | 45999 | 9 |
Deletion | Chr1 | 16355001 | 16385000 | 29999 | 5 |
Deletion | Chr1 | 16374821 | 16374822 | 1 | |
Deletion | Chr4 | 16598001 | 16632000 | 33999 | 5 |
Deletion | Chr11 | 16615001 | 16627000 | 11999 | 2 |
Deletion | Chr12 | 16855001 | 16878000 | 22999 | 3 |
Deletion | Chr4 | 16993001 | 17017000 | 23999 | 4 |
Deletion | Chr3 | 17148001 | 17170000 | 21999 | 4 |
Deletion | Chr2 | 17150001 | 17185000 | 34999 | 6 |
Deletion | Chr7 | 17293001 | 17315000 | 21999 | 3 |
Deletion | Chr3 | 17311001 | 17330000 | 18999 | 3 |
Deletion | Chr4 | 17316001 | 17329000 | 12999 | 2 |
Deletion | Chr6 | 17317001 | 17335000 | 17999 | 2 |
Deletion | Chr7 | 17354001 | 17382000 | 27999 | 4 |
Deletion | Chr5 | 17404001 | 17426000 | 21999 | 2 |
Deletion | Chr5 | 17562409 | 17562439 | 30 | |
Deletion | Chr8 | 17587001 | 17604000 | 16999 | 3 |
Deletion | Chr2 | 17638001 | 17662000 | 23999 | 3 |
Deletion | Chr7 | 17697001 | 17738000 | 40999 | 6 |
Deletion | Chr8 | 17777001 | 17837000 | 59999 | 9 |
Deletion | Chr10 | 17818001 | 17846000 | 27999 | 2 |
Deletion | Chr3 | 17849001 | 17870000 | 20999 | 3 |
Deletion | Chr8 | 18107001 | 18121000 | 13999 | 3 |
Deletion | Chr1 | 18357001 | 18378000 | 20999 | 3 |
Deletion | Chr10 | 18458001 | 18498000 | 39999 | 5 |
Deletion | Chr3 | 18608704 | 18608712 | 8 | |
Deletion | Chr8 | 18647001 | 18673000 | 25999 | 3 |
Deletion | Chr1 | 18939001 | 18976000 | 36999 | 6 |
Deletion | Chr3 | 19004001 | 19050000 | 45999 | 7 |
Deletion | Chr1 | 19142001 | 19162000 | 19999 | 3 |
Deletion | Chr12 | 19268001 | 19287000 | 18999 | 3 |
Deletion | Chr12 | 19337001 | 19418000 | 80999 | 11 |
Deletion | Chr1 | 19408001 | 19442000 | 33999 | 6 |
Deletion | Chr2 | 19529001 | 19564000 | 34999 | 7 |
Deletion | Chr5 | 19550001 | 19573000 | 22999 | 2 |
Deletion | Chr1 | 19698001 | 19730000 | 31999 | 4 |
Deletion | Chr1 | 19772001 | 19792000 | 19999 | 3 |
Deletion | Chr6 | 19875001 | 19898000 | 22999 | 3 |
Deletion | Chr12 | 20045001 | 20069000 | 23999 | 4 |
Deletion | Chr4 | 20149389 | 20149414 | 25 | |
Deletion | Chr12 | 20187001 | 20204000 | 16999 | 4 |
Deletion | Chr12 | 20296001 | 20313000 | 16999 | 4 |
Deletion | Chr10 | 20301001 | 20330000 | 28999 | 3 |
Deletion | Chr1 | 20496001 | 20583000 | 86999 | 10 |
Deletion | Chr1 | 20640001 | 20661000 | 20999 | 3 |
Deletion | Chr3 | 20699001 | 20737000 | 37999 | 4 |
Deletion | Chr5 | 20879001 | 20893000 | 13999 | 2 |
Deletion | Chr11 | 20897001 | 20933000 | 35999 | 5 |
Deletion | Chr9 | 20914001 | 20950000 | 35999 | 6 |
Deletion | Chr11 | 21076001 | 21115000 | 38999 | 7 |
Deletion | Chr8 | 21190001 | 21226000 | 35999 | 7 |
Deletion | Chr2 | 21199001 | 21221000 | 21999 | 2 |
Deletion | Chr6 | 21256001 | 21297000 | 40999 | 5 |
Deletion | Chr1 | 21501001 | 21517000 | 15999 | 2 |
Deletion | Chr4 | 21699001 | 21717000 | 17999 | 5 |
Deletion | Chr12 | 21735001 | 21766000 | 30999 | 3 |
Deletion | Chr7 | 21738001 | 21754000 | 15999 | 3 |
Deletion | Chr5 | 21831001 | 21901000 | 69999 | 11 |
Deletion | Chr7 | 22015001 | 22045000 | 29999 | 5 |
Deletion | Chr2 | 22108001 | 22142000 | 33999 | 6 |
Deletion | Chr1 | 22139001 | 22170000 | 30999 | 5 |
Deletion | Chr7 | 22207889 | 22207890 | 1 | |
Deletion | Chr3 | 22347001 | 22375000 | 27999 | 7 |
Deletion | Chr9 | 22455001 | 22497000 | 41999 | 6 |
Deletion | Chr12 | 22489001 | 22503000 | 13999 | 2 |
Deletion | Chr7 | 22683001 | 22767000 | 83999 | 13 |
Deletion | Chr2 | 22703382 | 22703418 | 36 | LOC_Os02g37620 |
Deletion | Chr3 | 22725001 | 22758000 | 32999 | 6 |
Deletion | Chr5 | 22926001 | 22950000 | 23999 | 3 |
Deletion | Chr8 | 22942001 | 22957000 | 14999 | |
Deletion | Chr8 | 23053001 | 23075000 | 21999 | 5 |
Deletion | Chr3 | 23148001 | 23166000 | 17999 | 4 |
Deletion | Chr1 | 23199001 | 23213000 | 13999 | LOC_Os01g41070 |
Deletion | Chr11 | 23267001 | 23312000 | 44999 | 7 |
Deletion | Chr3 | 23300001 | 23323000 | 22999 | 3 |
Deletion | Chr6 | 23321001 | 23333000 | 11999 | 3 |
Deletion | Chr7 | 23644001 | 23654000 | 9999 | LOC_Os07g39730 |
Deletion | Chr1 | 23675001 | 23690000 | 14999 | 3 |
Deletion | Chr5 | 23700001 | 23717000 | 16999 | 3 |
Deletion | Chr3 | 24079001 | 24111000 | 31999 | 9 |
Deletion | Chr12 | 24331808 | 24331928 | 120 | |
Deletion | Chr6 | 24414001 | 24436000 | 21999 | LOC_Os06g40950 |
Deletion | Chr5 | 24506001 | 24524000 | 17999 | 4 |
Deletion | Chr6 | 24620001 | 24671000 | 50999 | 7 |
Deletion | Chr11 | 24661001 | 24698000 | 36999 | 3 |
Deletion | Chr11 | 24718001 | 24771000 | 52999 | 9 |
Deletion | Chr8 | 24732001 | 24755000 | 22999 | 4 |
Deletion | Chr12 | 24924001 | 24942000 | 17999 | LOC_Os12g41980 |
Deletion | Chr6 | 25113001 | 25123000 | 9999 | LOC_Os06g42350 |
Deletion | Chr4 | 25287148 | 25287149 | 1 | |
Deletion | Chr2 | 25365968 | 25365970 | 2 | |
Deletion | Chr4 | 25697001 | 25743000 | 45999 | 8 |
Deletion | Chr7 | 25833001 | 25851000 | 17999 | 5 |
Deletion | Chr12 | 26028001 | 26042000 | 13999 | 2 |
Deletion | Chr4 | 26074001 | 26113000 | 38999 | 10 |
Deletion | Chr12 | 26238001 | 26264000 | 25999 | |
Deletion | Chr1 | 26271001 | 26300000 | 28999 | 6 |
Deletion | Chr8 | 26456001 | 26481000 | 24999 | 2 |
Deletion | Chr3 | 26496561 | 26496565 | 4 | |
Deletion | Chr11 | 26586001 | 26600000 | 13999 | 2 |
Deletion | Chr11 | 26627001 | 26646000 | 18999 | 7 |
Deletion | Chr5 | 26832001 | 26858000 | 25999 | 7 |
Deletion | Chr2 | 26898001 | 26912000 | 13999 | 4 |
Deletion | Chr6 | 27299001 | 27318000 | 18999 | 4 |
Deletion | Chr7 | 27380801 | 27380802 | 1 | |
Deletion | Chr4 | 27598001 | 27617000 | 18999 | 4 |
Deletion | Chr4 | 27689001 | 27710000 | 20999 | 5 |
Deletion | Chr3 | 28035001 | 28059000 | 23999 | 7 |
Deletion | Chr5 | 28620650 | 28620651 | 1 | |
Deletion | Chr1 | 28703001 | 28715000 | 11999 | 3 |
Deletion | Chr2 | 28913001 | 28939000 | 25999 | 6 |
Deletion | Chr4 | 29166001 | 29180000 | 13999 | 4 |
Deletion | Chr2 | 29301001 | 29319000 | 17999 | 3 |
Deletion | Chr4 | 29346930 | 29346931 | 1 | |
Deletion | Chr1 | 29395001 | 29418000 | 22999 | 3 |
Deletion | Chr4 | 29411001 | 29431000 | 19999 | 4 |
Deletion | Chr2 | 29954001 | 29972000 | 17999 | LOC_Os02g48990 |
Deletion | Chr4 | 30058001 | 30085000 | 26999 | 6 |
Deletion | Chr3 | 30115001 | 30174000 | 58999 | 10 |
Deletion | Chr4 | 30740001 | 30758000 | 17999 | 4 |
Deletion | Chr3 | 30788001 | 30801000 | 12999 | 3 |
Deletion | Chr2 | 30931001 | 30972000 | 40999 | 6 |
Deletion | Chr4 | 31483662 | 31483664 | 2 | |
Deletion | Chr3 | 32216001 | 32233000 | 16999 | 3 |
Deletion | Chr1 | 32220399 | 32220401 | 2 | |
Deletion | Chr1 | 32221001 | 32253000 | 31999 | 8 |
Deletion | Chr1 | 32371001 | 32395000 | 23999 | 7 |
Deletion | Chr1 | 32469001 | 32511000 | 41999 | 6 |
Deletion | Chr1 | 32580001 | 32593000 | 12999 | 3 |
Deletion | Chr1 | 32857001 | 32871000 | 13999 | 3 |
Deletion | Chr1 | 33287001 | 33311000 | 23999 | 3 |
Deletion | Chr1 | 33900001 | 33915000 | 14999 | 4 |
Deletion | Chr1 | 34218001 | 34251000 | 32999 | 4 |
Deletion | Chr4 | 34475001 | 34492000 | 16999 | 2 |
Deletion | Chr4 | 34614001 | 34633000 | 18999 | 3 |
Deletion | Chr3 | 34681001 | 34698000 | 16999 | 3 |
Deletion | Chr1 | 34972001 | 34992000 | 19999 | 3 |
Deletion | Chr3 | 35190001 | 35219000 | 28999 | 8 |
Deletion | Chr1 | 35629001 | 35649000 | 19999 | LOC_Os01g62040 |
Deletion | Chr1 | 36263001 | 36280000 | 16999 | 3 |
Deletion | Chr1 | 36749001 | 36782000 | 32999 | 4 |
Deletion | Chr1 | 37096001 | 37140000 | 43999 | 4 |
Deletion | Chr1 | 42095001 | 42107000 | 11999 | LOC_Os01g72740 |
Insertions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr4 | 27157086 | 27157086 | 1 | |
Insertion | Chr1 | 10779952 | 10779967 | 16 | |
Insertion | Chr1 | 25892872 | 25892872 | 1 | |
Insertion | Chr2 | 3911846 | 3911846 | 1 | |
Insertion | Chr2 | 14767637 | 14767637 | 1 | LOC_Os02g25330 |
Insertion | Chr2 | 32720960 | 32720968 | 9 | |
Insertion | Chr4 | 3491447 | 3491447 | 1 | |
Insertion | Chr4 | 7472624 | 7472625 | 2 | |
Insertion | Chr4 | 8954973 | 8954973 | 1 | |
Insertion | Chr4 | 11700805 | 11700805 | 1 | |
Insertion | Chr5 | 12952156 | 12952156 | 1 | |
Insertion | Chr6 | 25891354 | 25891363 | 10 | |
Insertion | Chr6 | 25891357 | 25891364 | 8 | |
Insertion | Chr9 | 225551 | 225551 | 1 | |
Insertion | Chr9 | 2823796 | 2823796 | 1 | |
Insertion | Chr10 | 6921967 | 6921967 | 1 | |
Insertion | Chr10 | 14007456 | 14007456 | 1 | |
Insertion | Chr11 | 9981486 | 9981486 | 1 | |
Insertion | Chr12 | 17142796 | 17142796 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr12 | 19500808 | 19501223 | LOC_Os12g32300 |
Translocations: 16
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 1679239 | Chr8 | 4115452 | |
Translocation | Chr9 | 2171232 | Chr2 | 10775902 | |
Translocation | Chr12 | 4130308 | Chr2 | 22709073 | 2 |
Translocation | Chr10 | 6617205 | Chr6 | 13455586 | |
Translocation | Chr11 | 7131664 | Chr3 | 19437692 | |
Translocation | Chr8 | 9624432 | Chr7 | 8806232 | LOC_Os08g15830 |
Translocation | Chr8 | 10523790 | Chr6 | 27322816 | |
Translocation | Chr11 | 16620192 | Chr6 | 18374055 | 2 |
Translocation | Chr12 | 18698736 | Chr5 | 6216827 | |
Translocation | Chr12 | 19572221 | Chr6 | 18237117 | |
Translocation | Chr12 | 21962545 | Chr1 | 11341431 | |
Translocation | Chr8 | 22534632 | Chr4 | 5916788 | |
Translocation | Chr11 | 24566533 | Chr1 | 14049322 | |
Translocation | Chr11 | 24769295 | Chr8 | 20145821 | |
Translocation | Chr4 | 25083265 | Chr1 | 18542519 | LOC_Os04g42399 |
Translocation | Chr11 | 28765260 | Chr9 | 1675441 |