Search Results


Mutant Information

Mutant NameFN3092-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3092-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 32
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr18746158C-THETSYNONYMOUS_CODING
SBSChr136462144A-GHETINTERGENIC
SBSChr137873882G-THOMOINTERGENIC
SBSChr139624182G-AHOMOINTRON
SBSChr142681420G-AHETINTERGENIC
SBSChr22791140C-THOMOINTERGENIC
SBSChr23598467C-THOMOINTERGENIC
SBSChr214345689C-GHETNON_SYNONYMOUS_CODINGLOC_Os02g24730
SBSChr228628308T-CHETNON_SYNONYMOUS_CODINGLOC_Os02g46920
SBSChr229668049T-CHETNON_SYNONYMOUS_CODINGLOC_Os02g48450
SBSChr312048311G-THETNON_SYNONYMOUS_CODINGLOC_Os03g21140
SBSChr323123639G-AHOMOINTERGENIC
SBSChr328043010G-AHETINTERGENIC
SBSChr44052847A-GHETINTERGENIC
SBSChr47487955G-THETINTERGENIC
SBSChr417369099A-THETINTERGENIC
SBSChr423242585G-CHOMONON_SYNONYMOUS_CODINGLOC_Os04g39110
SBSChr434014887G-AHOMOINTRON
SBSChr511098820G-AHETINTERGENIC
SBSChr514189204T-CHOMOINTERGENIC
SBSChr621908762G-THETNON_SYNONYMOUS_CODINGLOC_Os06g37090
SBSChr812324413C-THOMOINTERGENIC
SBSChr91060504G-AHETSYNONYMOUS_CODING
SBSChr97412797G-AHETINTERGENIC
SBSChr911299730G-CHETNON_SYNONYMOUS_CODINGLOC_Os09g18420
SBSChr109956105C-THETINTERGENIC
SBSChr1011014226G-AHETNON_SYNONYMOUS_CODINGLOC_Os10g21510
SBSChr1111642319G-AHOMOSTOP_GAINEDLOC_Os11g20150
SBSChr1115406909A-GHOMOSYNONYMOUS_CODING
SBSChr1118680363G-AHOMOINTERGENIC
SBSChr12143516T-AHOMOINTERGENIC
SBSChr1220325124A-THETINTERGENIC

Deletions: 362
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr11282021282042
DeletionChr4135001163000279993
DeletionChr10582001640000579998
DeletionChr9603001627000239992
DeletionChr107020017120009999LOC_Os10g02120
DeletionChr890300192200018999LOC_Os08g02350
DeletionChr7928001949000209996
DeletionChr1110200011051000309997
DeletionChr510310011063000319995
DeletionChr911880011213000249993
DeletionChr414390011456000169996
DeletionChr414770011506000289994
DeletionChr1217060011735000289998
DeletionChr318780011898000199995
DeletionChr1226900012705000149993
DeletionChr327330012764000309994
DeletionChr627450012756000109992
DeletionChr9282020828202091
DeletionChr830550013095000399997
DeletionChr1030600013102000419995
DeletionChr430950013152000569998
DeletionChr123131001314500013999LOC_Os12g06500
DeletionChr632340013256000219992
DeletionChr933020013336000339994
DeletionChr1233660013387000209993
DeletionChr5346900134760006999LOC_Os05g07070
DeletionChr1135430013589000459997
DeletionChr1036420013659000169992
DeletionChr9364850936485112
DeletionChr103680001369600015999LOC_Os10g07030
DeletionChr93937001394700099992
DeletionChr939980014033000349994
DeletionChr940760014095000189993
DeletionChr941730014189000159992
DeletionChr942310014254000229993
DeletionChr1242920014330000379999
DeletionChr644650014483000179993
DeletionChr844840014499000149993
DeletionChr1245510014565000139993
DeletionChr24676477467649316
DeletionChr947530014797000439996
DeletionChr7482700148890006199910
DeletionChr9489344548934461
DeletionChr449810015007000259994
DeletionChr125011740501183393
DeletionChr750200015070000499995
DeletionChr850760015096000199994
DeletionChr1251260015151000249993
DeletionChr451820015210000279996
DeletionChr852780015301000229994
DeletionChr1252860015313000269995
DeletionChr1054430015465000219992
DeletionChr1155487825549201419
DeletionChr856340015658000239993
DeletionChr1156680015700000319994
DeletionChr1057180015736000179993
DeletionChr55830001584100010999LOC_Os05g10770
DeletionChr4601430360143063
DeletionChr660290016048000189992
DeletionChr1060920016104000119992
DeletionChr9611700161710005399912
DeletionChr1061810016219000379996
DeletionChr362760016294000179995
DeletionChr1062860016321000349996
DeletionChr2635300163630009999
DeletionChr1639437563943838
DeletionChr765080016535000269994
DeletionChr465310016551000199992
DeletionChr565580016570000119992
DeletionChr9664600167340008799910
DeletionChr566680016696000279993
DeletionChr9668764966876501
DeletionChr767600016822000619999
DeletionChr76983001700800024999LOC_Os07g12450
DeletionChr10698765469876573
DeletionChr470250017042000169996
DeletionChr870590017088000289992
DeletionChr770960017114000179994
DeletionChr97156001717000013999LOC_Os09g12500
DeletionChr9760738876073902
DeletionChr1176680017692000239993
DeletionChr578600017894000339996
DeletionChr778620017876000139993
DeletionChr778900017915000249996
DeletionChr12811600182040008799911
DeletionChr4817960481796051
DeletionChr58229001825100021999LOC_Os05g14540
DeletionChr1283570018376000189993
DeletionChr883690018380000109992
DeletionChr583810018420000389996
DeletionChr783860018408000219993
DeletionChr1184740018503000289995
DeletionChr18509001851900099992
DeletionChr785890018620000309997
DeletionChr48604691860470312LOC_Os04g15850
DeletionChr487690018817000479998
DeletionChr787920018810000179993
DeletionChr590100019033000229994
DeletionChr89037001904800010999LOC_Os08g14990
DeletionChr10904800191330008499910
DeletionChr691150019162000469998
DeletionChr591950019222000269993
DeletionChr11923400193220008799914
DeletionChr19364001937300089992
DeletionChr793720019392000199995
DeletionChr1195040019550000459994
DeletionChr59518001953000011999LOC_Os05g16860
DeletionChr895340019566000319998
DeletionChr1197090019722000129993
DeletionChr597130019744000309998
DeletionChr19794554979459339
DeletionChr1298940019914000199993
DeletionChr11998300110017000339994
DeletionChr8100242091002426051
DeletionChr11101450011016300017999LOC_Os11g18070
DeletionChr51032200110359000369995
DeletionChr810404001104630005899911
DeletionChr111052700110610000829998
DeletionChr41058700110616000289994
DeletionChr510626476106264804
DeletionChr111066500110691000259994
DeletionChr41072800110778000499998
DeletionChr71087600110897000209995
DeletionChr121096500110999000339997
DeletionChr81097900110995000159994
DeletionChr11101100111039000279992
DeletionChr91101500111054000389993
DeletionChr11110730011110400030999LOC_Os11g19610
DeletionChr31109600111125000289992
DeletionChr101112200111180000579998
DeletionChr21123900111292000529997
DeletionChr91126800111301000329996
DeletionChr111142200111435000129993
DeletionChr1111474001115400006599911
DeletionChr11151400111540000259993
DeletionChr5116390011165400014999LOC_Os05g20320
DeletionChr11171400111734000199994
DeletionChr101172500111736000109992
DeletionChr121176400111792000279993
DeletionChr81180700111831000239995
DeletionChr121182600111861000349994
DeletionChr121187500111892000169992
DeletionChr11197400112005000309993
DeletionChr61199800112026000279994
DeletionChr31200100112019000179993
DeletionChr61204600112073000269993
DeletionChr121205046212050626164
DeletionChr41206800112094000259994
DeletionChr61211600112155000389998
DeletionChr21215900112182000229994
DeletionChr31216800112190000219993
DeletionChr61228100112318000369998
DeletionChr41229900112322000229993
DeletionChr81261200112634000219992
DeletionChr51263100112682000509995
DeletionChr101268800112713000249993
DeletionChr111271200112735000229994
DeletionChr21276300112783000199993
DeletionChr31286800112889000209993
DeletionChr111292600112964000379995
DeletionChr51304000113076000359993
DeletionChr61306300113086000229995
DeletionChr41312900113164000349993
DeletionChr41325700113296000389996
DeletionChr113292490132924911
DeletionChr91332200113343000209994
DeletionChr71334600113370000239996
DeletionChr913387001134510006399914
DeletionChr111341200113454000419996
DeletionChr21352900113565000359998
DeletionChr111353400113558000239994
DeletionChr71359800113611000129992
DeletionChr21399100114007000159994
DeletionChr51410000114117000169994
DeletionChr121413500114165000299993
DeletionChr11141420011424800010599919
DeletionChr121419900114210000109993
DeletionChr41423700114257000199993
DeletionChr111428400114303000189994
DeletionChr214368001144210005299911
DeletionChr1214414105144141061
DeletionChr714428494144284962
DeletionChr31448000114504000239994
DeletionChr51449100114518000269996
DeletionChr11457100114606000349996
DeletionChr111463900114665000259996
DeletionChr71467300114706000329995
DeletionChr21469900114731000319994
DeletionChr5147520011476500012999LOC_Os05g25850
DeletionChr715036001150430006999LOC_Os07g27120
DeletionChr41505300115090000369996
DeletionChr215060295150602961
DeletionChr61510000115118000179992
DeletionChr615147001151560008999LOC_Os06g27800
DeletionChr4152544711525448817
DeletionChr51531900115350000309996
DeletionChr11532500115346000209993
DeletionChr121533000115378000479995
DeletionChr3153460011535400079992
DeletionChr11540400115423000189993
DeletionChr51551300115535000219996
DeletionChr12155300011554300012999
DeletionChr1015546224155462251
DeletionChr121557400115597000229994
DeletionChr121561800115637000189993
DeletionChr111564300115704000609999
DeletionChr21583300115853000199992
DeletionChr121586200115892000299992
DeletionChr415896339158963401
DeletionChr115926001159950006899914
DeletionChr2159320011594700014999LOC_Os02g27440
DeletionChr41594300115981000379994
DeletionChr71597000115990000199992
DeletionChr41600200116020000179994
DeletionChr81600900116031000219994
DeletionChr61607600116095000189993
DeletionChr81608400116102000179992
DeletionChr21616900116212000429994
DeletionChr21631600116336000199994
DeletionChr121633600116382000459999
DeletionChr11635500116385000299995
DeletionChr116374821163748221
DeletionChr41659800116632000339995
DeletionChr111661500116627000119992
DeletionChr121685500116878000229993
DeletionChr41699300117017000239994
DeletionChr31714800117170000219994
DeletionChr21715000117185000349996
DeletionChr71729300117315000219993
DeletionChr31731100117330000189993
DeletionChr41731600117329000129992
DeletionChr61731700117335000179992
DeletionChr71735400117382000279994
DeletionChr51740400117426000219992
DeletionChr5175624091756243930
DeletionChr81758700117604000169993
DeletionChr21763800117662000239993
DeletionChr71769700117738000409996
DeletionChr81777700117837000599999
DeletionChr101781800117846000279992
DeletionChr31784900117870000209993
DeletionChr81810700118121000139993
DeletionChr11835700118378000209993
DeletionChr101845800118498000399995
DeletionChr318608704186087128
DeletionChr81864700118673000259993
DeletionChr11893900118976000369996
DeletionChr31900400119050000459997
DeletionChr11914200119162000199993
DeletionChr121926800119287000189993
DeletionChr1219337001194180008099911
DeletionChr11940800119442000339996
DeletionChr21952900119564000349997
DeletionChr51955000119573000229992
DeletionChr11969800119730000319994
DeletionChr11977200119792000199993
DeletionChr61987500119898000229993
DeletionChr122004500120069000239994
DeletionChr4201493892014941425
DeletionChr122018700120204000169994
DeletionChr122029600120313000169994
DeletionChr102030100120330000289993
DeletionChr120496001205830008699910
DeletionChr12064000120661000209993
DeletionChr32069900120737000379994
DeletionChr52087900120893000139992
DeletionChr112089700120933000359995
DeletionChr92091400120950000359996
DeletionChr112107600121115000389997
DeletionChr82119000121226000359997
DeletionChr22119900121221000219992
DeletionChr62125600121297000409995
DeletionChr12150100121517000159992
DeletionChr42169900121717000179995
DeletionChr122173500121766000309993
DeletionChr72173800121754000159993
DeletionChr521831001219010006999911
DeletionChr72201500122045000299995
DeletionChr22210800122142000339996
DeletionChr12213900122170000309995
DeletionChr722207889222078901
DeletionChr32234700122375000279997
DeletionChr92245500122497000419996
DeletionChr122248900122503000139992
DeletionChr722683001227670008399913
DeletionChr2227033822270341836LOC_Os02g37620
DeletionChr32272500122758000329996
DeletionChr52292600122950000239993
DeletionChr8229420012295700014999
DeletionChr82305300123075000219995
DeletionChr32314800123166000179994
DeletionChr1231990012321300013999LOC_Os01g41070
DeletionChr112326700123312000449997
DeletionChr32330000123323000229993
DeletionChr62332100123333000119993
DeletionChr723644001236540009999LOC_Os07g39730
DeletionChr12367500123690000149993
DeletionChr52370000123717000169993
DeletionChr32407900124111000319999
DeletionChr122433180824331928120
DeletionChr6244140012443600021999LOC_Os06g40950
DeletionChr52450600124524000179994
DeletionChr62462000124671000509997
DeletionChr112466100124698000369993
DeletionChr112471800124771000529999
DeletionChr82473200124755000229994
DeletionChr12249240012494200017999LOC_Os12g41980
DeletionChr625113001251230009999LOC_Os06g42350
DeletionChr425287148252871491
DeletionChr225365968253659702
DeletionChr42569700125743000459998
DeletionChr72583300125851000179995
DeletionChr122602800126042000139992
DeletionChr426074001261130003899910
DeletionChr12262380012626400025999
DeletionChr12627100126300000289996
DeletionChr82645600126481000249992
DeletionChr326496561264965654
DeletionChr112658600126600000139992
DeletionChr112662700126646000189997
DeletionChr52683200126858000259997
DeletionChr22689800126912000139994
DeletionChr62729900127318000189994
DeletionChr727380801273808021
DeletionChr42759800127617000189994
DeletionChr42768900127710000209995
DeletionChr32803500128059000239997
DeletionChr528620650286206511
DeletionChr12870300128715000119993
DeletionChr22891300128939000259996
DeletionChr42916600129180000139994
DeletionChr22930100129319000179993
DeletionChr429346930293469311
DeletionChr12939500129418000229993
DeletionChr42941100129431000199994
DeletionChr2299540012997200017999LOC_Os02g48990
DeletionChr43005800130085000269996
DeletionChr330115001301740005899910
DeletionChr43074000130758000179994
DeletionChr33078800130801000129993
DeletionChr23093100130972000409996
DeletionChr431483662314836642
DeletionChr33221600132233000169993
DeletionChr132220399322204012
DeletionChr13222100132253000319998
DeletionChr13237100132395000239997
DeletionChr13246900132511000419996
DeletionChr13258000132593000129993
DeletionChr13285700132871000139993
DeletionChr13328700133311000239993
DeletionChr13390000133915000149994
DeletionChr13421800134251000329994
DeletionChr43447500134492000169992
DeletionChr43461400134633000189993
DeletionChr33468100134698000169993
DeletionChr13497200134992000199993
DeletionChr33519000135219000289998
DeletionChr1356290013564900019999LOC_Os01g62040
DeletionChr13626300136280000169993
DeletionChr13674900136782000329994
DeletionChr13709600137140000439994
DeletionChr1420950014210700011999LOC_Os01g72740

Insertions: 19
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr427157086271570861
InsertionChr1107799521077996716
InsertionChr125892872258928721
InsertionChr2391184639118461
InsertionChr214767637147676371LOC_Os02g25330image
InsertionChr232720960327209689
InsertionChr4349144734914471
InsertionChr4747262474726252
InsertionChr4895497389549731
InsertionChr411700805117008051
InsertionChr512952156129521561
InsertionChr6258913542589136310
InsertionChr625891357258913648
InsertionChr92255512255511
InsertionChr9282379628237961
InsertionChr10692196769219671
InsertionChr1014007456140074561
InsertionChr11998148699814861
InsertionChr1217142796171427961

Inversions: 1
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr121950080819501223LOC_Os12g32300

Translocations: 16
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr111679239Chr84115452
TranslocationChr92171232Chr210775902
TranslocationChr124130308Chr2227090732
TranslocationChr106617205Chr613455586
TranslocationChr117131664Chr319437692
TranslocationChr89624432Chr78806232LOC_Os08g15830
TranslocationChr810523790Chr627322816
TranslocationChr1116620192Chr6183740552
TranslocationChr1218698736Chr56216827
TranslocationChr1219572221Chr618237117
TranslocationChr1221962545Chr111341431
TranslocationChr822534632Chr45916788
TranslocationChr1124566533Chr114049322
TranslocationChr1124769295Chr820145821
TranslocationChr425083265Chr118542519LOC_Os04g42399
TranslocationChr1128765260Chr91675441