Search Results

Mutant Information

Mutant Name	FN3094-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3094-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23880044	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g42110
SBS	Chr1	23880046	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g42110
SBS	Chr1	33720741	G-A	HET	INTERGENIC
SBS	Chr1	35837030	G-A	HET	INTERGENIC
SBS	Chr2	1616462	C-G	HOMO	INTERGENIC
SBS	Chr2	16202560	G-A	HOMO	INTERGENIC
SBS	Chr2	16202587	G-A	HOMO	INTERGENIC
SBS	Chr2	16202593	C-A	HOMO	INTERGENIC
SBS	Chr3	400388	G-C	HET	INTERGENIC
SBS	Chr3	14413091	C-T	HOMO	INTERGENIC
SBS	Chr3	33137936	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	677109	C-A	HET	INTERGENIC
SBS	Chr5	4279261	A-G	HET	INTERGENIC
SBS	Chr5	4279274	A-T	HET	INTERGENIC
SBS	Chr5	4798716	T-C	HET	INTERGENIC
SBS	Chr5	5379369	C-T	HET	INTERGENIC
SBS	Chr5	16325116	T-A	HOMO	INTERGENIC
SBS	Chr5	24448941	C-A	HOMO	INTERGENIC
SBS	Chr6	7548425	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g13630
SBS	Chr7	4898009	C-T	HET	INTERGENIC
SBS	Chr7	9342439	C-T	HOMO	INTERGENIC
SBS	Chr7	27046979	G-T	HET	INTERGENIC
SBS	Chr8	1544448	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03330
SBS	Chr8	24073956	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	10810508	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g17680
SBS	Chr9	13993865	C-T	HET	INTERGENIC
SBS	Chr10	10361574	C-T	HET	INTERGENIC
SBS	Chr10	10631051	A-G	HOMO	INTERGENIC
SBS	Chr10	13122922	C-A	HOMO	INTERGENIC
SBS	Chr10	13958990	C-T	HET	INTERGENIC
SBS	Chr11	21644881	C-T	HET	INTERGENIC
SBS	Chr11	24237317	T-A	HOMO	INTERGENIC
SBS	Chr12	2798497	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	13116732	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	19428808	C-T	HET	INTERGENIC

Deletions: 414

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	18734	18753	19
Deletion	Chr1	345001	369000	23999	LOC_Os01g02884
Deletion	Chr10	534001	552000	17999	4
Deletion	Chr8	561001	584000	22999	3
Deletion	Chr10	587001	641000	53999	8
Deletion	Chr9	609001	623000	13999	LOC_Os09g01910
Deletion	Chr9	683001	696000	12999	3
Deletion	Chr10	703001	715000	11999	LOC_Os10g02130
Deletion	Chr10	755001	772000	16999	2
Deletion	Chr7	768001	790000	21999	2
Deletion	Chr10	1010001	1049000	38999	5
Deletion	Chr11	1022001	1049000	26999	6
Deletion	Chr5	1028001	1071000	42999	7
Deletion	Chr6	1146001	1161000	14999	LOC_Os06g03120
Deletion	Chr9	1192001	1207000	14999	2
Deletion	Chr11	1198001	1227000	28999	3
Deletion	Chr3	1370001	1392000	21999	4
Deletion	Chr9	1389001	1403000	13999	4
Deletion	Chr12	1426001	1437000	10999	3
Deletion	Chr4	1482001	1500000	17999	3
Deletion	Chr11	1577623	1577625	2	LOC_Os11g03940
Deletion	Chr9	1637001	1711000	73999	11
Deletion	Chr4	1663001	1679000	15999	LOC_Os04g03910
Deletion	Chr12	1708001	1721000	12999	6
Deletion	Chr4	1792001	1808000	15999	5
Deletion	Chr3	1867001	1903000	35999	6
Deletion	Chr4	1886001	1901000	14999	2
Deletion	Chr4	1944001	1979000	34999	7
Deletion	Chr5	2030001	2050000	19999	4
Deletion	Chr10	2237001	2268000	30999	7
Deletion	Chr9	2287221	2287222	1
Deletion	Chr12	2508001	2522000	13999	4
Deletion	Chr3	2793001	2820000	26999	8
Deletion	Chr10	3059001	3094000	34999	5
Deletion	Chr4	3088001	3151000	62999	9
Deletion	Chr12	3132001	3150000	17999	2
Deletion	Chr9	3236001	3267000	30999	7
Deletion	Chr9	3301001	3335000	33999	3
Deletion	Chr2	3316001	3334000	17999	4
Deletion	Chr12	3460001	3477000	16999	3
Deletion	Chr11	3552001	3587000	34999	7
Deletion	Chr9	3581001	3606000	24999	3
Deletion	Chr1	3755001	3775000	19999	2
Deletion	Chr10	3819001	3837000	17999	LOC_Os10g07270
Deletion	Chr8	3957001	3995000	37999	5
Deletion	Chr9	3997001	4035000	37999	5
Deletion	Chr12	4138001	4152000	13999	2
Deletion	Chr9	4233001	4252000	18999	3
Deletion	Chr7	4248001	4272000	23999	4
Deletion	Chr12	4291001	4334000	42999	10
Deletion	Chr10	4676001	4735000	58999	12
Deletion	Chr12	4687001	4774000	86999	13
Deletion	Chr7	4826001	4888000	61999	11
Deletion	Chr9	4918865	4918866	1
Deletion	Chr4	4982001	5012000	29999	4
Deletion	Chr7	5023001	5072000	48999	6
Deletion	Chr8	5081001	5096000	14999	4
Deletion	Chr12	5119001	5149000	29999	3
Deletion	Chr5	5152001	5173000	20999	4
Deletion	Chr4	5190001	5211000	20999	6
Deletion	Chr12	5282001	5310000	27999	4
Deletion	Chr10	5444001	5464000	19999	2
Deletion	Chr11	5563001	5588000	24999	5
Deletion	Chr5	5565969	5565970	1	LOC_Os05g10230
Deletion	Chr6	5633001	5653000	19999	5
Deletion	Chr8	5637001	5653000	15999	3
Deletion	Chr11	5678001	5696000	17999	3
Deletion	Chr9	6120001	6165000	44999	10
Deletion	Chr10	6175001	6224000	48999	7
Deletion	Chr6	6317001	6355000	37999	5
Deletion	Chr2	6345001	6364000	18999	LOC_Os02g12550
Deletion	Chr9	6357001	6377000	19999	3
Deletion	Chr4	6487001	6496000	8999	LOC_Os04g11900
Deletion	Chr4	6526001	6554000	27999	4
Deletion	Chr5	6549001	6583000	33999	5
Deletion	Chr2	6562001	6574000	11999	4
Deletion	Chr5	6620034	6620060	26
Deletion	Chr9	6643001	6742000	98999	12
Deletion	Chr5	6663001	6701000	37999	4
Deletion	Chr1	7051001	7067000	15999	2
Deletion	Chr8	7058001	7093000	34999	3
Deletion	Chr1	7128001	7145000	16999	2
Deletion	Chr9	7154001	7173000	18999	2
Deletion	Chr2	7169001	7188000	18999	4
Deletion	Chr10	7228481	7228482	1
Deletion	Chr5	7234001	7255000	20999	3
Deletion	Chr7	7282001	7304000	21999	2
Deletion	Chr7	7427001	7444000	16999	2
Deletion	Chr3	7492001	7518000	25999	4
Deletion	Chr3	7836001	7868000	31999	9
Deletion	Chr7	7842001	7912000	69999	12
Deletion	Chr5	7866001	7896000	29999	5
Deletion	Chr6	7876001	7901000	24999	5
Deletion	Chr4	7971001	7994000	22999	4
Deletion	Chr8	8049001	8073000	23999	5
Deletion	Chr9	8066001	8084000	17999	3
Deletion	Chr12	8118001	8144000	25999	4
Deletion	Chr7	8174001	8187000	12999	2
Deletion	Chr5	8234001	8256000	21999	LOC_Os05g14750
Deletion	Chr12	8352001	8378000	25999	3
Deletion	Chr5	8386001	8421000	34999	4
Deletion	Chr2	8408001	8441000	32999	6
Deletion	Chr10	8410001	8425000	14999	2
Deletion	Chr11	8475001	8503000	27999	4
Deletion	Chr7	8590001	8622000	31999	7
Deletion	Chr7	8689344	8689353	9
Deletion	Chr10	8748131	8748142	11	LOC_Os10g17360
Deletion	Chr4	8768001	8815000	46999	7
Deletion	Chr3	8777001	8790000	12999	3
Deletion	Chr7	8794001	8813000	18999	4
Deletion	Chr10	9049001	9131000	81999	10
Deletion	Chr4	9068001	9081000	12999	2
Deletion	Chr9	9098001	9192000	93999	7
Deletion	Chr6	9110001	9169000	58999	10
Deletion	Chr5	9182001	9249000	66999	9
Deletion	Chr11	9229001	9328000	98999	15
Deletion	Chr6	9264001	9283000	18999	2
Deletion	Chr3	9390001	9407000	16999	2
Deletion	Chr5	9468001	9482000	13999	2
Deletion	Chr4	9495001	9518000	22999	6
Deletion	Chr11	9510001	9554000	43999	3
Deletion	Chr8	9529001	9566000	36999	8
Deletion	Chr7	9658001	9682000	23999	3
Deletion	Chr11	9707001	9758000	50999	9
Deletion	Chr5	9710001	9746000	35999	12
Deletion	Chr8	9843001	9869000	25999	4
Deletion	Chr8	9883001	9907000	23999	4
Deletion	Chr12	9896001	9917000	20999	4
Deletion	Chr11	9982001	10014000	31999	5
Deletion	Chr6	10042625	10042627	2
Deletion	Chr11	10243001	10373000	129999	13
Deletion	Chr9	10304001	10320000	15999	3
Deletion	Chr5	10327001	10356000	28999	5
Deletion	Chr8	10338113	10338114	1
Deletion	Chr7	10340001	10362000	21999	4
Deletion	Chr11	10534001	10609000	74999	6
Deletion	Chr4	10592001	10615000	22999	3
Deletion	Chr9	10595127	10595131	4
Deletion	Chr7	10610001	10657000	46999	6
Deletion	Chr11	10664001	10688000	23999	4
Deletion	Chr4	10751001	10779000	27999	4
Deletion	Chr7	10872001	10900000	27999	6
Deletion	Chr8	10892001	10912000	19999	2
Deletion	Chr7	10941001	11017000	75999	14
Deletion	Chr5	10962001	11027000	64999	12
Deletion	Chr8	10977001	10996000	18999	4
Deletion	Chr4	11004137	11004138	1
Deletion	Chr1	11010001	11038000	27999	2
Deletion	Chr9	11022001	11052000	29999	2
Deletion	Chr4	11116001	11139000	22999	5
Deletion	Chr10	11123001	11188000	64999	10
Deletion	Chr1	11138001	11152000	13999	3
Deletion	Chr12	11211001	11231000	19999	LOC_Os12g19350
Deletion	Chr10	11282001	11301000	18999	2
Deletion	Chr11	11412001	11436000	23999	4
Deletion	Chr4	11463001	11546000	82999	11
Deletion	Chr11	11475001	11536000	60999	9
Deletion	Chr1	11517001	11539000	21999	3
Deletion	Chr11	11526809	11526857	48	LOC_Os11g20030
Deletion	Chr3	11544001	11582000	37999	4
Deletion	Chr8	11603001	11634000	30999	5
Deletion	Chr10	11680001	11704000	23999	4
Deletion	Chr9	11714001	11730000	15999	5
Deletion	Chr1	11718001	11735000	16999	3
Deletion	Chr12	11755001	11791000	35999	4
Deletion	Chr12	11825001	11856000	30999	4
Deletion	Chr6	11840001	11862000	21999	4
Deletion	Chr10	11853001	11872000	18999	4
Deletion	Chr12	11881001	11893000	11999	3
Deletion	Chr6	12045001	12072000	26999	3
Deletion	Chr10	12052001	12067000	14999	2
Deletion	Chr4	12065001	12096000	30999	4
Deletion	Chr6	12113001	12148000	34999	7
Deletion	Chr7	12152701	12152702	1
Deletion	Chr5	12172001	12202000	29999	4
Deletion	Chr12	12242001	12264000	21999	4
Deletion	Chr6	12283001	12319000	35999	9
Deletion	Chr4	12303001	12323000	19999	3
Deletion	Chr8	12609001	12639000	29999	3
Deletion	Chr5	12632001	12687000	54999	4
Deletion	Chr10	12690001	12712000	21999	3
Deletion	Chr11	12716001	12728000	11999	3
Deletion	Chr10	12727001	12755000	27999	7
Deletion	Chr5	12827001	12843000	15999	2
Deletion	Chr10	12833001	12852000	18999	2
Deletion	Chr9	12844001	12872000	27999	4
Deletion	Chr11	12920001	12963000	42999	6
Deletion	Chr3	12973001	13005000	31999	3
Deletion	Chr6	13036001	13089000	52999	9
Deletion	Chr5	13042001	13070000	27999	3
Deletion	Chr7	13093001	13123000	29999	5
Deletion	Chr4	13123001	13160000	36999	4
Deletion	Chr6	13258001	13269000	10999	3
Deletion	Chr9	13321001	13346000	24999	4
Deletion	Chr9	13388001	13451000	62999	14
Deletion	Chr7	13469001	13570000	100999	11
Deletion	Chr2	13534001	13559000	24999	6
Deletion	Chr7	13596001	13613000	16999	4
Deletion	Chr6	13628001	13647000	18999	3
Deletion	Chr5	13684001	13712000	27999	4
Deletion	Chr6	13690001	13727000	36999	4
Deletion	Chr11	13726001	13754000	27999	2
Deletion	Chr6	13757001	13771000	13999	LOC_Os06g23684
Deletion	Chr6	13770954	13770955	1
Deletion	Chr6	13835001	13898000	62999	10
Deletion	Chr6	13930001	13959000	28999	5
Deletion	Chr5	13971001	13987000	15999	LOC_Os05g24190
Deletion	Chr7	14075001	14105000	29999	6
Deletion	Chr5	14107001	14117000	9999	3
Deletion	Chr6	14126001	14158000	31999	4
Deletion	Chr12	14133001	14165000	31999	3
Deletion	Chr11	14139001	14245000	105999	19
Deletion	Chr4	14198609	14198610	1	LOC_Os04g24730
Deletion	Chr12	14200001	14208000	7999	3
Deletion	Chr4	14240001	14256000	15999	2
Deletion	Chr6	14299001	14334000	34999	5
Deletion	Chr2	14370001	14421000	50999	10
Deletion	Chr7	14435001	14455000	19999	4
Deletion	Chr12	14538001	14557000	18999	2
Deletion	Chr11	14637001	14670000	32999	6
Deletion	Chr2	14695001	14798000	102999	14
Deletion	Chr6	14894001	14944000	49999	8
Deletion	Chr4	15051001	15082000	30999	4
Deletion	Chr6	15095001	15122000	26999	5
Deletion	Chr5	15124001	15193000	68999	12
Deletion	Chr6	15143001	15161000	17999	2
Deletion	Chr8	15309001	15324000	14999	4
Deletion	Chr5	15321001	15354000	32999	6
Deletion	Chr1	15326001	15340000	13999	2
Deletion	Chr12	15329001	15384000	54999	5
Deletion	Chr10	15504001	15517000	12999	3
Deletion	Chr5	15511001	15537000	25999	7
Deletion	Chr12	15540968	15540969	1
Deletion	Chr7	15726001	15758000	31999	4
Deletion	Chr6	15745001	15773000	27999	4
Deletion	Chr5	15780001	15798000	17999	2
Deletion	Chr8	15792001	15811000	18999	3
Deletion	Chr7	15804001	15822000	17999	4
Deletion	Chr1	15890001	16020000	129999	21
Deletion	Chr2	15931001	15953000	21999	2
Deletion	Chr7	15969001	15996000	26999	4
Deletion	Chr8	16005001	16031000	25999	4
Deletion	Chr11	16014001	16033000	18999	4
Deletion	Chr5	16063328	16063334	6	LOC_Os05g27600
Deletion	Chr6	16074001	16099000	24999	3
Deletion	Chr12	16106001	16142000	35999	4
Deletion	Chr2	16313001	16330000	16999	3
Deletion	Chr12	16335001	16382000	46999	9
Deletion	Chr1	16349001	16387000	37999	5
Deletion	Chr12	16456001	16472000	15999	4
Deletion	Chr1	16495001	16512000	16999	3
Deletion	Chr10	16505001	16525000	19999	5
Deletion	Chr6	16529001	16644000	114999	17
Deletion	Chr1	16593001	16696000	102999	20
Deletion	Chr12	16709001	16725000	15999	LOC_Os12g28280
Deletion	Chr3	16905173	16905205	32
Deletion	Chr6	16916001	16946000	29999	7
Deletion	Chr11	16917001	16937000	19999	LOC_Os11g29200
Deletion	Chr11	17125001	17158000	32999	6
Deletion	Chr2	17164001	17181000	16999	5
Deletion	Chr12	17186372	17186375	3
Deletion	Chr1	17203001	17217000	13999	LOC_Os01g31470
Deletion	Chr7	17295001	17311000	15999	3
Deletion	Chr3	17308001	17329000	20999	4
Deletion	Chr6	17312001	17332000	19999	3
Deletion	Chr7	17351001	17380000	28999	3
Deletion	Chr1	17359001	17417000	57999	7
Deletion	Chr5	17409001	17427000	17999	2
Deletion	Chr10	17430001	17450000	19999	4
Deletion	Chr7	17700001	17732000	31999	4
Deletion	Chr8	17781001	17808000	26999	5
Deletion	Chr3	18036001	18084000	47999	8
Deletion	Chr6	18053214	18053215	1
Deletion	Chr8	18104001	18123000	18999	4
Deletion	Chr11	18215661	18215673	12
Deletion	Chr1	18366001	18374000	7999	2
Deletion	Chr10	18456001	18500000	43999	7
Deletion	Chr8	18649001	18674000	24999	3
Deletion	Chr10	18713820	18713821	1
Deletion	Chr8	18844001	18862000	17999	2
Deletion	Chr1	18944001	18974000	29999	4
Deletion	Chr3	19002001	19050000	47999	8
Deletion	Chr7	19014001	19022000	7999	LOC_Os07g32680
Deletion	Chr8	19070001	19112000	41999	5
Deletion	Chr11	19095001	19108000	12999	3
Deletion	Chr1	19140001	19164000	23999	3
Deletion	Chr11	19185810	19185829	19
Deletion	Chr12	19270001	19287000	16999	3
Deletion	Chr12	19330001	19421000	90999	11
Deletion	Chr2	19524001	19570000	45999	8
Deletion	Chr5	19542001	19577000	34999	2
Deletion	Chr3	19564324	19564479	155
Deletion	Chr1	19628001	19646000	17999	4
Deletion	Chr3	19645001	19664000	18999	2
Deletion	Chr2	19673811	19673814	3
Deletion	Chr2	19691604	19691606	2
Deletion	Chr1	19699001	19729000	29999	4
Deletion	Chr5	19778001	19805000	26999	4
Deletion	Chr2	19809001	19854000	44999	7
Deletion	Chr1	19821323	19821333	10
Deletion	Chr3	20003001	20016000	12999	2
Deletion	Chr3	20104001	20144000	39999	7
Deletion	Chr1	20196001	20233000	36999	6
Deletion	Chr3	20277001	20315000	37999	7
Deletion	Chr3	20342001	20372000	29999	5
Deletion	Chr1	20418001	20434000	15999	3
Deletion	Chr1	20493001	20578000	84999	9
Deletion	Chr3	20700001	20740000	39999	4
Deletion	Chr9	20899001	20947000	47999	7
Deletion	Chr11	21077001	21114000	36999	6
Deletion	Chr12	21110001	21128000	17999	2
Deletion	Chr3	21130001	21140000	9999	3
Deletion	Chr1	21187001	21206000	18999	3
Deletion	Chr8	21195001	21219000	23999	6
Deletion	Chr2	21196001	21222000	25999	2
Deletion	Chr6	21257001	21295000	37999	4
Deletion	Chr11	21355001	21371000	15999	LOC_Os11g36960
Deletion	Chr3	21486001	21532000	45999	7
Deletion	Chr9	21495001	21511000	15999	LOC_Os09g37240
Deletion	Chr5	21829001	21906000	76999	12
Deletion	Chr2	22109001	22138000	28999	5
Deletion	Chr1	22138001	22173000	34999	6
Deletion	Chr6	22167001	22192000	24999	2
Deletion	Chr7	22291001	22316000	24999	3
Deletion	Chr3	22346001	22381000	34999	7
Deletion	Chr4	22568001	22589000	20999	2
Deletion	Chr7	22681001	22767000	85999	13
Deletion	Chr3	22726001	22760000	33999	7
Deletion	Chr5	22929001	22954000	24999	3
Deletion	Chr8	23051001	23073000	21999	6
Deletion	Chr4	23207001	23233000	25999	4
Deletion	Chr11	23270001	23313000	42999	7
Deletion	Chr3	23302001	23327000	24999	3
Deletion	Chr6	23320001	23337000	16999	4
Deletion	Chr7	23633001	23667000	33999	4
Deletion	Chr2	23655001	23692000	36999	7
Deletion	Chr5	23701001	23720000	18999	3
Deletion	Chr8	23762001	23795000	32999	6
Deletion	Chr7	23811001	23844000	32999	7
Deletion	Chr2	23919001	23938000	18999
Deletion	Chr6	23920001	23937000	16999	3
Deletion	Chr3	23951001	23966000	14999	4
Deletion	Chr3	24080001	24110000	29999	8
Deletion	Chr6	24413001	24431000	17999	LOC_Os06g40950
Deletion	Chr6	24622001	24672000	49999	6
Deletion	Chr11	24659001	24699000	39999	3
Deletion	Chr11	24724001	24766000	41999	8
Deletion	Chr8	24731001	24757000	25999	4
Deletion	Chr11	24871001	24937000	65999	11
Deletion	Chr11	25376001	25394000	17999	2
Deletion	Chr11	25462001	25485000	22999	6
Deletion	Chr4	25701001	25740000	38999	9
Deletion	Chr7	25838001	25851000	12999	4
Deletion	Chr4	26079001	26107000	27999	8
Deletion	Chr5	26103001	26150000	46999	6
Deletion	Chr11	26428001	26448000	19999	3
Deletion	Chr11	26585001	26602000	16999	2
Deletion	Chr11	26624001	26645000	20999	6
Deletion	Chr7	26636001	26655000	18999	3
Deletion	Chr2	26810001	26832000	21999	4
Deletion	Chr5	26826001	26868000	41999	9
Deletion	Chr7	26883001	26911000	27999	4
Deletion	Chr4	27090703	27090704	1	LOC_Os04g45770
Deletion	Chr8	27272001	27286000	13999	2
Deletion	Chr7	27304001	27318000	13999	2
Deletion	Chr4	27599001	27621000	21999	4
Deletion	Chr3	27665001	27678000	12999	2
Deletion	Chr3	28039001	28059000	19999	5
Deletion	Chr3	28224001	28243000	18999	5
Deletion	Chr3	28269001	28284000	14999	3
Deletion	Chr11	28526001	28534000	7999	LOC_Os12g01320
Deletion	Chr1	28535001	28558000	22999	7
Deletion	Chr1	28704001	28721000	16999	4
Deletion	Chr3	28724001	28734000	9999	2
Deletion	Chr7	28807001	28830000	22999	3
Deletion	Chr2	28915001	28938000	22999	6
Deletion	Chr2	29014001	29041000	26999	6
Deletion	Chr5	29167001	29190000	22999	3
Deletion	Chr3	29245001	29278000	32999	3
Deletion	Chr4	29409001	29440000	30999	6
Deletion	Chr2	29756001	29773000	16999	LOC_Os02g48620
Deletion	Chr1	30028001	30048000	19999	4
Deletion	Chr4	30060001	30083000	22999	6
Deletion	Chr3	30117001	30175000	57999	10
Deletion	Chr4	30183001	30222000	38999	6
Deletion	Chr2	30944001	30968000	23999	4
Deletion	Chr3	30954001	30973000	18999	4
Deletion	Chr1	30988001	31015000	26999	4
Deletion	Chr4	31785001	31807000	21999	3
Deletion	Chr1	32060001	32092000	31999	7
Deletion	Chr3	32217001	32239000	21999	5
Deletion	Chr1	32218001	32253000	34999	8
Deletion	Chr1	32462001	32511000	48999	7
Deletion	Chr2	32499001	32514000	14999	2
Deletion	Chr1	32581001	32601000	19999	5
Deletion	Chr1	32849001	32878000	28999	3
Deletion	Chr1	33286001	33313000	26999	3
Deletion	Chr4	33982001	34040000	57999	14
Deletion	Chr3	34361001	34386000	24999	6
Deletion	Chr3	34492001	34531000	38999	8
Deletion	Chr1	34970001	34988000	17999	3
Deletion	Chr3	35191001	35211000	19999	6
Deletion	Chr1	35622001	35644000	21999	LOC_Os01g61610
Deletion	Chr1	36751001	36779000	27999	3
Deletion	Chr1	37100001	37140000	39999	4
Deletion	Chr1	38705001	38747000	41999	7
Deletion	Chr1	39306982	39306983	1
Deletion	Chr1	39372001	39391000	18999	4
Deletion	Chr1	41152001	41179000	26999	7
Deletion	Chr1	41240001	41296000	55999	3
Deletion	Chr1	41664447	41664455	8
Deletion	Chr1	42210001	42226000	15999	2
Deletion	Chr1	42259050	42259063	13
Deletion	Chr1	42264001	42283000	18999	5

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	34287786	34287789	4
Insertion	Chr3	12728030	12728031	2
Insertion	Chr6	5718480	5718481	2
Insertion	Chr6	16111024	16111025	2
Insertion	Chr8	5256478	5256479	2	LOC_Os08g09050
Insertion	Chr9	1349112	1349113	2
Insertion	Chr10	348650	348651	2
Insertion	Chr10	12010476	12010477	2
Insertion	Chr2	34141028	34141029	2
Insertion	Chr3	2425653	2425653	1
Insertion	Chr4	9988432	9988432	1
Insertion	Chr5	20358272	20358273	2
Insertion	Chr7	4843878	4843878	1	LOC_Os07g09240
Insertion	Chr7	8585877	8585877	1
Insertion	Chr8	27472247	27472256	10
Insertion	Chr9	14334102	14334102	1
Insertion	Chr11	27044991	27044991	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4468598	4468856
Inversion	Chr10	13259935	13480297
Inversion	Chr8	15854376	15854847	LOC_Os08g26060
Inversion	Chr3	17159701	17159971	LOC_Os03g30084
Inversion	Chr10	18870304	19349060	LOC_Os10g35294
Inversion	Chr4	19544565	19690829	LOC_Os04g32670
Inversion	Chr4	19544579	19690832	LOC_Os04g32670
Inversion	Chr3	24566015	24566547

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2973771	Chr3	25081980	LOC_Os03g44550
Translocation	Chr3	11169112	Chr2	34566126
Translocation	Chr8	14913149	Chr7	12309747	2
Translocation	Chr11	15613259	Chr9	749691
Translocation	Chr11	15982154	Chr9	13448483	LOC_Os11g27760
Translocation	Chr8	16402960	Chr2	11764396
Translocation	Chr8	17493337	Chr1	19783225	LOC_Os08g28630
Translocation	Chr10	18869929	Chr7	4132495	LOC_Os10g35294
Translocation	Chr10	19281237	Chr7	4132523	LOC_Os10g36060
Translocation	Chr8	25751367	Chr6	17039665
Translocation	Chr11	27420981	Chr7	17149932

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