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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16964344	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g31020
SBS	Chr1	23705579	C-T	HET
SBS	Chr1	24000327	G-A	HET
SBS	Chr1	32160332	A-G	Homo
SBS	Chr1	8795404	A-G	Homo
SBS	Chr10	10600041	G-T	Homo
SBS	Chr10	6894674	G-T	HET
SBS	Chr11	13841868	G-A	HET
SBS	Chr11	917344	C-T	HET
SBS	Chr12	11045513	G-A	Homo
SBS	Chr12	22929920	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37340
SBS	Chr2	20526926	C-T	HET	STOP_GAINED	LOC_Os02g34300
SBS	Chr2	35040046	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57190
SBS	Chr2	4668547	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g09100
SBS	Chr2	5391343	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g10270
SBS	Chr2	999601	G-A	HET
SBS	Chr3	22607747	C-T	Homo
SBS	Chr3	25287298	G-A	Homo
SBS	Chr4	29286842	C-T	HET
SBS	Chr4	33608480	G-T	HET
SBS	Chr4	9399637	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17140
SBS	Chr5	12178208	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g20750
SBS	Chr5	22445907	C-T	HET
SBS	Chr7	16549786	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28350
SBS	Chr8	14097393	C-T	HET
SBS	Chr8	18291228	G-C	HET
SBS	Chr8	462076	G-A	HET
SBS	Chr8	462503	C-T	HET
SBS	Chr8	6006970	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10304
SBS	Chr9	697599	G-A	HET

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2711735	2711736	1
Deletion	Chr12	4914300	4914305	5
Deletion	Chr10	11271297	11271299	2
Deletion	Chr7	12229819	12229820	1
Deletion	Chr9	13114440	13114441	1
Deletion	Chr1	14444388	14444396	8
Deletion	Chr1	15284287	15284288	1	LOC_Os01g27370
Deletion	Chr1	15613769	15613795	26	LOC_Os01g27930
Deletion	Chr2	16249004	16249014	10
Deletion	Chr11	16298001	16533000	234999	28
Deletion	Chr7	19538779	19538781	2
Deletion	Chr8	20887246	20887260	14
Deletion	Chr10	22724601	22724610	9
Deletion	Chr9	22796656	22796664	8	LOC_Os09g39740
Deletion	Chr12	23274730	23274735	5
Deletion	Chr2	26444324	26444333	9	LOC_Os02g43810
Deletion	Chr1	26880678	26880679	1
Deletion	Chr6	28718710	28718716	6	LOC_Os06g47380
Deletion	Chr2	30755526	30755534	8	LOC_Os02g50360
Deletion	Chr4	33176870	33176885	15

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	5985524	5985524	1
Insertion	Chr3	16078768	16078769	2

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7765420	Chr1	1946546
Translocation	Chr9	11286411	Chr3	23642999
Translocation	Chr9	11286506	Chr3	23642999
Translocation	Chr12	11348725	Chr3	20767126	2

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