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Mutant Information

Mutant Name	FN3110-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3110-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1093167	G-C	Homo
SBS	Chr1	13976638	G-A	HET
SBS	Chr1	16431333	T-G	HET
SBS	Chr1	16442553	T-A	HET
SBS	Chr1	16442554	C-A	HET
SBS	Chr2	2086172	C-T	Homo
SBS	Chr2	18927682	G-T	HET
SBS	Chr2	20427215	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g34160
SBS	Chr2	20445673	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g34180
SBS	Chr2	27264840	C-T	HET
SBS	Chr3	24120517	G-A	HET
SBS	Chr3	32392966	T-A	HET
SBS	Chr3	32409196	A-T	HET
SBS	Chr4	19504688	C-A	HET
SBS	Chr4	32973431	G-A	HET
SBS	Chr4	33990829	G-T	HET
SBS	Chr4	35084304	T-C	HET
SBS	Chr5	5176954	T-A	Homo
SBS	Chr5	5774979	C-A	Homo
SBS	Chr5	7613903	C-T	HET	STOP_GAINED	LOC_Os05g13740
SBS	Chr5	10618779	G-C	Homo
SBS	Chr5	27568869	C-T	HET
SBS	Chr5	28707701	G-C	Homo
SBS	Chr6	1863588	G-A	Homo
SBS	Chr6	7464069	A-G	HET
SBS	Chr6	11857208	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20600
SBS	Chr9	10190723	C-T	HET	STOP_GAINED	LOC_Os09g16600
SBS	Chr10	7189621	C-G	HET
SBS	Chr10	11191354	A-T	HET
SBS	Chr11	3178215	T-C	Homo
SBS	Chr11	6013018	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g10900
SBS	Chr11	10667584	G-A	Homo	STOP_GAINED	LOC_Os11g18790
SBS	Chr11	11393110	T-A	HET
SBS	Chr12	7515062	G-C	HET
SBS	Chr12	25552330	T-A	Homo

Deletions: 164

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	604001	621000	16999	2
Deletion	Chr12	740001	761000	20999	2
Deletion	Chr8	804001	822000	17999	2
Deletion	Chr8	909001	928000	18999	2
Deletion	Chr11	1023001	1052000	28999	7
Deletion	Chr9	1082001	1104000	21999
Deletion	Chr9	1198001	1211000	12999	LOC_Os09g02690
Deletion	Chr11	1202001	1221000	18999	2
Deletion	Chr4	2093001	2120000	26999	5
Deletion	Chr9	2201001	2220000	18999	3
Deletion	Chr8	2247001	2261000	13999	LOC_Os08g04540
Deletion	Chr12	2505001	2522000	16999	5
Deletion	Chr6	2747001	2755000	7999	2
Deletion	Chr5	2937001	2951000	13999	2
Deletion	Chr2	3314001	3327000	12999	2
Deletion	Chr6	3721001	3757000	35999	7
Deletion	Chr1	3983001	3997000	13999	2
Deletion	Chr9	4312001	4329000	16999	2
Deletion	Chr11	4526001	4554000	27999	LOC_Os11g08569
Deletion	Chr5	4532001	4550000	17999	5
Deletion	Chr9	4761001	4792000	30999	5
Deletion	Chr7	5027001	5063000	35999	4
Deletion	Chr5	5121519	5121541	22
Deletion	Chr4	5191001	5209000	17999	5
Deletion	Chr9	5477001	5493000	15999	2
Deletion	Chr10	5505041	5505052	11
Deletion	Chr6	5637001	5652000	14999	4
Deletion	Chr11	5884001	5902000	17999	4
Deletion	Chr4	6530001	6546000	15999	LOC_Os04g11910
Deletion	Chr5	6550001	6586000	35999	5
Deletion	Chr5	6681001	6696000	14999	LOC_Os05g11770
Deletion	Chr8	6785001	6805000	19999	2
Deletion	Chr10	6996001	7019000	22999	3
Deletion	Chr1	7055001	7071000	15999	2
Deletion	Chr11	7598001	7612000	13999	LOC_Os11g13810
Deletion	Chr11	7669001	7688000	18999	3
Deletion	Chr11	7721001	7738000	16999	2
Deletion	Chr2	7842001	7856000	13999	3
Deletion	Chr5	7865001	7886000	20999	4
Deletion	Chr10	8069001	8088000	18999	3
Deletion	Chr6	8079001	8092000	12999
Deletion	Chr7	8174001	8186000	11999	2
Deletion	Chr10	8411001	8421000	9999	LOC_Os10g16880
Deletion	Chr11	8483001	8501000	17999	4
Deletion	Chr7	8591001	8620000	28999	7
Deletion	Chr5	8677882	8677890	8
Deletion	Chr9	8735001	8759000	23999	4
Deletion	Chr4	8770001	8813000	42999	7
Deletion	Chr9	8996001	9007000	10999	LOC_Os09g14990
Deletion	Chr10	9337001	9424000	86999	22
Deletion	Chr7	9373001	9393000	19999	5
Deletion	Chr8	9577001	9585000	7999
Deletion	Chr11	9658001	9671000	12999	2
Deletion	Chr11	9709001	9727000	17999	4
Deletion	Chr5	9710001	9750000	39999	7
Deletion	Chr5	9783001	9798000	14999	LOC_Os05g17120
Deletion	Chr2	10115686	10115690	4
Deletion	Chr4	10244001	10265000	20999	5
Deletion	Chr5	10628001	10672000	43999	4
Deletion	Chr4	10748001	10777000	28999	5
Deletion	Chr12	10971001	10984000	12999	3
Deletion	Chr9	11016001	11058000	41999	3
Deletion	Chr11	11028985	11028988	3
Deletion	Chr11	11030121	11030130	9
Deletion	Chr10	11127001	11182000	54999	8
Deletion	Chr2	11268001	11286000	17999	4
Deletion	Chr3	11550001	11567000	16999	2
Deletion	Chr5	11698998	11699012	14
Deletion	Chr1	11715001	11734000	18999	4
Deletion	Chr12	11761001	11785000	23999	3
Deletion	Chr1	11978001	12006000	27999	3
Deletion	Chr5	12628001	12682000	53999	6
Deletion	Chr10	12840001	12851000	10999	2
Deletion	Chr6	12889001	12902000	12999	2
Deletion	Chr3	12987001	13000000	12999	2
Deletion	Chr5	13039001	13074000	34999	3
Deletion	Chr9	13040001	13052000	11999	2
Deletion	Chr4	13053001	13060000	6999	LOC_Os04g22990
Deletion	Chr4	13128001	13166000	37999	4
Deletion	Chr6	13253001	13269000	15999	3
Deletion	Chr11	13419001	13453000	33999	5
Deletion	Chr12	13633001	13647000	13999	2
Deletion	Chr10	13734001	13754000	19999	LOC_Os10g26420
Deletion	Chr11	13793001	13811000	17999	2
Deletion	Chr5	14103001	14116000	12999	5
Deletion	Chr6	14124001	14156000	31999	4
Deletion	Chr12	14135001	14159000	23999	3
Deletion	Chr6	14302001	14339000	36999	6
Deletion	Chr12	14336001	14353000	16999	2
Deletion	Chr3	14479001	14499000	19999	3
Deletion	Chr12	14531001	14559000	27999	3
Deletion	Chr1	14568001	14616000	47999	10
Deletion	Chr11	14626001	14684000	57999	8
Deletion	Chr9	14829726	14829728	2
Deletion	Chr3	15346001	15359000	12999	3
Deletion	Chr11	15784001	15808000	23999	2
Deletion	Chr12	15861001	15893000	31999	2
Deletion	Chr2	15927001	15954000	26999	3
Deletion	Chr4	15956001	15972000	15999	2
Deletion	Chr7	16232001	16243000	10999	2
Deletion	Chr1	16267194	16267197	3
Deletion	Chr10	16555001	16573000	17999	4
Deletion	Chr11	16597001	16628000	30999	4
Deletion	Chr12	16711001	16723000	11999	2
Deletion	Chr3	16897001	16913000	15999	2
Deletion	Chr3	17148001	17169000	20999	4
Deletion	Chr2	17165001	17188000	22999	4
Deletion	Chr6	17320001	17335000	14999	2
Deletion	Chr7	17352001	17378000	25999	4
Deletion	Chr8	17451001	17476000	24999	4
Deletion	Chr2	17640001	17667000	26999	4
Deletion	Chr10	17816001	17848000	31999	2
Deletion	Chr8	18643001	18673000	29999	3
Deletion	Chr5	18664001	18683000	18999	4
Deletion	Chr8	18838001	18869000	30999	3
Deletion	Chr7	19258618	19258620	2
Deletion	Chr5	19266001	19281000	14999
Deletion	Chr12	19380001	19424000	43999	5
Deletion	Chr2	19531001	19557000	25999	6
Deletion	Chr1	19770001	19792000	21999	3
Deletion	Chr3	20003001	20021000	17999	3
Deletion	Chr12	20093134	20093140	6
Deletion	Chr1	20203001	20240000	36999	6
Deletion	Chr6	20331001	20357000	25999	5
Deletion	Chr3	20340999	20341000	1	LOC_Os03g36670
Deletion	Chr8	20705001	20723000	17999	5
Deletion	Chr12	21154001	21173000	18999
Deletion	Chr7	21161001	21178000	16999	4
Deletion	Chr2	21200001	21223000	22999	2
Deletion	Chr8	21366001	21392000	25999	4
Deletion	Chr9	21652681	21652688	7
Deletion	Chr4	21832515	21832525	10
Deletion	Chr2	22112001	22143000	30999	6
Deletion	Chr6	22167001	22187000	19999	3
Deletion	Chr10	22338001	22363000	24999	LOC_Os10g41560
Deletion	Chr3	22395633	22395642	9
Deletion	Chr12	22436001	22451000	14999	LOC_Os12g36660
Deletion	Chr12	22696001	22711000	14999	4
Deletion	Chr8	22941001	22961000	19999
Deletion	Chr8	23124001	23145000	20999	4
Deletion	Chr6	23455608	23455742	134
Deletion	Chr5	23705001	23717000	11999	3
Deletion	Chr3	23951001	23965000	13999	4
Deletion	Chr3	24081001	24108000	26999	8
Deletion	Chr2	24163001	24177000	13999	4
Deletion	Chr6	24641001	24662000	20999	2
Deletion	Chr8	24728001	24752000	23999	5
Deletion	Chr2	24846001	24861000	14999	LOC_Os02g41470
Deletion	Chr5	25199001	25213000	13999	3
Deletion	Chr11	25636001	25651000	14999	3
Deletion	Chr12	26032001	26043000	10999	2
Deletion	Chr2	26809001	26832000	22999	4
Deletion	Chr7	26889001	26906000	16999	3
Deletion	Chr12	27241355	27241361	6
Deletion	Chr2	27884001	27908000	23999	5
Deletion	Chr5	28152863	28152864	1
Deletion	Chr6	28758001	28781000	22999	7
Deletion	Chr3	28940329	28940331	2
Deletion	Chr7	29574762	29574774	12
Deletion	Chr3	32425399	32425404	5
Deletion	Chr1	34231001	34251000	19999	4
Deletion	Chr4	34613001	34641000	27999	5
Deletion	Chr1	37535169	37535170	1
Deletion	Chr1	37611737	37611738	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7821753	7821754	2
Insertion	Chr8	13359081	13359082	2
Insertion	Chr2	9034220	9034255	36
Insertion	Chr5	13988934	13988934	1
Insertion	Chr7	19142200	19142201	2	LOC_Os07g32220
Insertion	Chr8	10686992	10686993	2
Insertion	Chr9	19095800	19095821	22
Insertion	Chr12	23760671	23760742	72

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11798198	12210120	2
Inversion	Chr1	11798207	12210126	2
Inversion	Chr6	22192229	22192405	LOC_Os06g37500

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