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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11533446	G-T	HET	INTERGENIC
SBS	Chr1	16473133	T-C	HET	INTRON
SBS	Chr1	24522366	C-T	HET	INTERGENIC
SBS	Chr1	31523224	A-T	HOMO	INTERGENIC
SBS	Chr2	7563747	C-A	HET	INTRON
SBS	Chr2	9975427	C-T	HET	STOP_GAINED	LOC_Os02g17350
SBS	Chr2	15957072	C-A	HOMO	UTR_3_PRIME
SBS	Chr2	30370446	C-T	HOMO	INTERGENIC
SBS	Chr2	30784913	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	30784914	C-A	HET	SYNONYMOUS_CODING
SBS	Chr3	5025402	G-A	HET	INTERGENIC
SBS	Chr4	11713821	A-T	HOMO	INTERGENIC
SBS	Chr4	13900937	A-T	HOMO	INTERGENIC
SBS	Chr4	18977179	A-G	HET	INTERGENIC
SBS	Chr4	22924877	G-A	HET	INTERGENIC
SBS	Chr5	11021168	C-A	HET	STOP_GAINED	LOC_Os05g18990
SBS	Chr6	1600577	A-T	HET	INTRON
SBS	Chr6	13339335	A-T	HET	INTERGENIC
SBS	Chr6	15015612	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25710
SBS	Chr6	15015613	A-G	HET	SYNONYMOUS_CODING
SBS	Chr6	15027905	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	15027925	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25730
SBS	Chr6	16806983	A-T	HET	INTERGENIC
SBS	Chr6	21735269	C-T	HET	INTRON
SBS	Chr6	22187087	C-T	HET	INTERGENIC
SBS	Chr6	27345951	T-C	HOMO	INTERGENIC
SBS	Chr6	28212026	A-G	HOMO	INTERGENIC
SBS	Chr7	2372212	A-G	HET	INTERGENIC
SBS	Chr7	4884972	C-A	HET	INTRON
SBS	Chr7	12686440	G-A	HET	INTERGENIC
SBS	Chr7	17019131	C-A	HET	INTERGENIC
SBS	Chr7	23128339	T-C	HET	INTERGENIC
SBS	Chr7	28854777	T-G	HET	INTERGENIC
SBS	Chr8	499856	T-A	HET	UTR_3_PRIME
SBS	Chr8	7086518	G-C	HET	INTRON
SBS	Chr8	22255062	T-C	HOMO	INTERGENIC
SBS	Chr8	22292961	C-A	HOMO	INTERGENIC
SBS	Chr9	12519169	C-A	HET	INTERGENIC
SBS	Chr11	8509984	A-T	HET	INTERGENIC
SBS	Chr11	13425019	T-G	HET	INTERGENIC
SBS	Chr12	13362065	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23580

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	175403	175404	1
Deletion	Chr10	711001	773000	61999	9
Deletion	Chr7	1145023	1145024	1	LOC_Os07g03030
Deletion	Chr10	2038263	2038264	1
Deletion	Chr11	2816084	2816085	1
Deletion	Chr10	3386842	3386908	66
Deletion	Chr5	7548020	7548065	45
Deletion	Chr11	8477052	8477055	3
Deletion	Chr6	8691711	8691712	1
Deletion	Chr8	9810742	9810743	1	LOC_Os08g16090
Deletion	Chr10	11197651	11197652	1
Deletion	Chr1	12528708	12528709	1
Deletion	Chr9	14340408	14340410	2
Deletion	Chr7	14403650	14403668	18
Deletion	Chr12	14730710	14730711	1
Deletion	Chr8	15070088	15070091	3
Deletion	Chr7	19503989	19503991	2
Deletion	Chr8	20762001	20799000	36999	4
Deletion	Chr9	22856508	22856514	6	LOC_Os09g39870
Deletion	Chr6	23107570	23107571	1
Deletion	Chr8	23112001	23148000	35999	6
Deletion	Chr2	23462049	23462050	1
Deletion	Chr8	24785351	24785359	8	LOC_Os08g39240
Deletion	Chr5	27816315	27816316	1
Deletion	Chr2	33662187	33662188	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	1792841	1792850	10
Insertion	Chr11	14854010	14854011	2
Insertion	Chr1	22477851	22477862	12
Insertion	Chr1	34062155	34062155	1
Insertion	Chr2	15397256	15397265	10
Insertion	Chr2	18680854	18680854	1	LOC_Os02g31190
Insertion	Chr4	7017770	7017771	2
Insertion	Chr4	11974491	11974491	1
Insertion	Chr8	26643987	26643987	1	LOC_Os08g42160
Insertion	Chr9	1102866	1102869	4
Insertion	Chr11	27324436	27324436	1
Insertion	Chr11	27751458	27751459	2
Insertion	Chr12	3375375	3375382	8
Insertion	Chr12	25289270	25289273	4
Insertion	Chr12	26181699	26181704	6

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	381977	403586
Inversion	Chr9	2246120	2279186
Inversion	Chr9	2246161	2279372
Inversion	Chr8	20761898	21094605	LOC_Os08g33300
Inversion	Chr8	20798016	21094604
Inversion	Chr8	24498304	24595659

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	6255180	Chr5	24807575	LOC_Os07g11360
Translocation	Chr3	6782051	Chr2	26075049
Translocation	Chr6	10773494	Chr5	5501080	LOC_Os06g18950
Translocation	Chr6	10780459	Chr5	5501078
Translocation	Chr12	10782367	Chr3	13360872
Translocation	Chr8	20797444	Chr2	176939
Translocation	Chr8	20797828	Chr2	176923
Translocation	Chr6	21657633	Chr4	17923009
Translocation	Chr11	22922628	Chr1	18021449

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