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| Mutant Information |
|---|
| Mutant Name | FN3115-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3115-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12850770 | A-G | HET | ||
| SBS | Chr1 | 12850771 | C-T | HET | ||
| SBS | Chr10 | 13866161 | A-C | Homo | ||
| SBS | Chr10 | 22721470 | C-T | HET | ||
| SBS | Chr10 | 4571337 | A-T | HET | ||
| SBS | Chr10 | 8435811 | G-C | HET | ||
| SBS | Chr11 | 2097945 | A-T | HET | ||
| SBS | Chr11 | 2455613 | C-T | HET | ||
| SBS | Chr11 | 2455614 | C-T | HET | ||
| SBS | Chr12 | 10500464 | C-A | HET | ||
| SBS | Chr12 | 21072166 | G-C | HET | ||
| SBS | Chr12 | 25128479 | G-C | HET | ||
| SBS | Chr2 | 28952505 | G-A | HET | ||
| SBS | Chr2 | 6338143 | C-T | Homo | ||
| SBS | Chr3 | 8864700 | G-A | HET | ||
| SBS | Chr4 | 13079999 | T-A | HET | ||
| SBS | Chr4 | 13080000 | C-A | HET | ||
| SBS | Chr4 | 13080005 | G-A | HET | ||
| SBS | Chr4 | 1528263 | C-T | HET | ||
| SBS | Chr5 | 19136494 | C-T | HET | ||
| SBS | Chr5 | 23154461 | T-C | HET | ||
| SBS | Chr6 | 12627501 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g21860 |
| SBS | Chr7 | 20039921 | C-T | HET | ||
| SBS | Chr7 | 20171670 | C-T | HET | ||
| SBS | Chr7 | 25468974 | C-T | HET | ||
| SBS | Chr7 | 2916360 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g06020 |
| SBS | Chr8 | 12599853 | G-C | HET | ||
| SBS | Chr9 | 14633705 | C-T | HET | ||
| SBS | Chr9 | 18661029 | C-T | HET | ||
| SBS | Chr9 | 5602623 | T-G | HET |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1617912 | 1617914 | 2 | LOC_Os09g03330 |
| Deletion | Chr11 | 2458003 | 2458016 | 13 | |
| Deletion | Chr5 | 3906050 | 3906054 | 4 | LOC_Os05g07340 |
| Deletion | Chr5 | 5262909 | 5262911 | 2 | |
| Deletion | Chr9 | 5620711 | 5620715 | 4 | |
| Deletion | Chr4 | 5851048 | 5851050 | 2 | LOC_Os04g10760 |
| Deletion | Chr1 | 6479846 | 6479849 | 3 | LOC_Os01g11920 |
| Deletion | Chr4 | 7127616 | 7127617 | 1 | |
| Deletion | Chr2 | 7238707 | 7238708 | 1 | |
| Deletion | Chr6 | 9133548 | 9133549 | 1 | LOC_Os06g16050 |
| Deletion | Chr11 | 10183620 | 10183621 | 1 | |
| Deletion | Chr5 | 12010382 | 12010385 | 3 | |
| Deletion | Chr1 | 12074371 | 12074372 | 1 | |
| Deletion | Chr12 | 12965666 | 12965682 | 16 | |
| Deletion | Chr12 | 14804071 | 14804076 | 5 | LOC_Os12g25580 |
| Deletion | Chr12 | 16652901 | 16652906 | 5 | |
| Deletion | Chr5 | 17936811 | 17936812 | 1 | |
| Deletion | Chr9 | 19793603 | 19793613 | 10 | |
| Deletion | Chr10 | 23159272 | 23159279 | 7 | LOC_Os10g42960 |
| Deletion | Chr2 | 26327704 | 26327708 | 4 | |
| Deletion | Chr3 | 26603939 | 26603941 | 2 | |
| Deletion | Chr8 | 27551485 | 27551486 | 1 | |
| Deletion | Chr3 | 33050081 | 33050095 | 14 | LOC_Os03g58060 |
| Deletion | Chr3 | 34789591 | 34789597 | 6 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 10453742 | 10453751 | 10 | |
| Insertion | Chr7 | 5490740 | 5490742 | 3 | LOC_Os07g10220 |
Inversions: 12
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 8774364 | Chr9 | 19734484 | 2 |
| Translocation | Chr12 | 8774739 | Chr10 | 14106520 | LOC_Os12g15370 |
| Translocation | Chr10 | 13746737 | Chr9 | 19736789 | |
| Translocation | Chr4 | 15519059 | Chr2 | 22225444 | |
| Translocation | Chr9 | 17141370 | Chr4 | 28339443 | LOC_Os09g28220 |
| Translocation | Chr9 | 17141371 | Chr2 | 34066819 | LOC_Os09g28220 |
| Translocation | Chr9 | 19736789 | Chr2 | 34066805 | |
| Translocation | Chr4 | 28339732 | Chr2 | 34066817 |