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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31222676	A-T	HET	INTRON
SBS	Chr10	13582647	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26220
SBS	Chr11	15224820	G-C	HET	INTERGENIC
SBS	Chr11	16018122	A-G	HET	INTERGENIC
SBS	Chr11	19794202	G-A	HET	INTERGENIC
SBS	Chr11	20050670	G-A	HET	INTERGENIC
SBS	Chr11	4170794	T-A	HET	INTRON
SBS	Chr11	5971476	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g10830
SBS	Chr2	25231159	T-A	HET	INTERGENIC
SBS	Chr4	1038331	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g02710
SBS	Chr4	28461817	G-A	HET	INTERGENIC
SBS	Chr5	12578364	C-T	HET	INTERGENIC
SBS	Chr5	6368133	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	16510657	T-A	HOMO	INTRON
SBS	Chr6	4092429	C-T	HET	INTERGENIC
SBS	Chr6	8212931	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g14590
SBS	Chr6	8799129	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15510
SBS	Chr8	13403119	A-T	HOMO	INTERGENIC
SBS	Chr8	16195105	C-T	HET	INTERGENIC
SBS	Chr8	7872819	C-T	HET	INTERGENIC
SBS	Chr9	6701372	C-T	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1882193	1882195	2
Deletion	Chr3	4304137	4304177	40
Deletion	Chr8	4430785	4430786	1
Deletion	Chr2	11701874	11701875	1
Deletion	Chr7	11990563	11990564	1
Deletion	Chr7	12164891	12164893	2
Deletion	Chr7	12334499	12334504	5	LOC_Os07g22060
Deletion	Chr7	13160190	13160194	4
Deletion	Chr3	13269373	13269793	420	LOC_Os03g22970
Deletion	Chr8	13449713	13449714	1	LOC_Os08g22310
Deletion	Chr7	13805001	13837000	31999	3
Deletion	Chr2	14298883	14298884	1
Deletion	Chr1	17046330	17046343	13	LOC_Os01g31180
Deletion	Chr11	18251162	18251163	1
Deletion	Chr10	21705632	21705641	9
Deletion	Chr2	22213616	22213617	1
Deletion	Chr10	22664572	22664575	3
Deletion	Chr3	23191177	23191184	7
Deletion	Chr4	24490221	24490240	19
Deletion	Chr6	26331806	26331807	1
Deletion	Chr5	27377157	27377159	2
Deletion	Chr3	32940836	32940839	3	LOC_Os03g57808
Deletion	Chr1	34069850	34069853	3
Deletion	Chr2	34372124	34372130	6

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38346317	38346317	1
Insertion	Chr11	15899623	15899634	12
Insertion	Chr2	34845898	34845899	2
Insertion	Chr3	8231561	8231561	1
Insertion	Chr3	9533618	9533619	2
Insertion	Chr4	26001470	26001473	4
Insertion	Chr4	2644025	2644025	1
Insertion	Chr5	4954155	4954155	1
Insertion	Chr7	11895799	11895806	8
Insertion	Chr7	26518228	26518231	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8453261	8609118
Inversion	Chr3	8453272	8609121
Inversion	Chr12	14771792	15122288	LOC_Os12g26030

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2239005	Chr1	2819544
Translocation	Chr10	2239110	Chr1	2819415
Translocation	Chr6	6998749	Chr1	11768943
Translocation	Chr12	8401878	Chr8	25008773
Translocation	Chr12	8732277	Chr3	5096190
Translocation	Chr5	9430015	Chr1	40606660
Translocation	Chr12	9499739	Chr11	15465625
Translocation	Chr10	10312058	Chr4	5525973
Translocation	Chr12	12366742	Chr3	26901377
Translocation	Chr6	14068299	Chr2	10853837	LOC_Os02g18612
Translocation	Chr2	23033539	Chr1	42158311
Translocation	Chr11	28772598	Chr1	16059626

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