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Mutant Information |
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Mutant Name | FN3119-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3119-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 38
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 29297880 | G-T | HET | INTERGENIC | |
SBS | Chr1 | 41345231 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 15163986 | C-G | HET | INTERGENIC | |
SBS | Chr11 | 2313739 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g05220 |
SBS | Chr11 | 2313741 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr11 | 7514701 | T-C | HET | INTRON | |
SBS | Chr11 | 9636303 | C-T | HET | INTRON | |
SBS | Chr12 | 19542873 | G-T | HOMO | INTERGENIC | |
SBS | Chr2 | 15749126 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 16006306 | T-A | HET | INTERGENIC | |
SBS | Chr2 | 16304453 | A-T | HET | INTERGENIC | |
SBS | Chr2 | 8387888 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 16153517 | G-T | HOMO | UTR_3_PRIME | |
SBS | Chr3 | 24402660 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g43650 |
SBS | Chr3 | 26596222 | A-G | HOMO | INTERGENIC | |
SBS | Chr3 | 32946484 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g57820 |
SBS | Chr3 | 34335037 | T-A | HET | INTRON | |
SBS | Chr3 | 8336329 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 17161327 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 17676636 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 19978087 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 2253023 | A-T | HOMO | INTERGENIC | |
SBS | Chr4 | 29979135 | G-A | HOMO | INTERGENIC | |
SBS | Chr4 | 29979136 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 6903850 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12480 |
SBS | Chr5 | 13817464 | A-T | HET | INTRON | |
SBS | Chr5 | 1601834 | C-A | HET | INTERGENIC | |
SBS | Chr5 | 1829761 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr6 | 13075081 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g22500 |
SBS | Chr6 | 24591372 | T-C | HOMO | INTERGENIC | |
SBS | Chr6 | 29605079 | G-T | HET | INTRON | |
SBS | Chr7 | 20570719 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 26389723 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 4203273 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 771383 | A-T | HET | INTERGENIC | |
SBS | Chr9 | 17184151 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr9 | 7769519 | C-A | HET | INTERGENIC | |
SBS | Chr9 | 9531671 | C-T | HET | SPLICE_SITE_ACCEPTOR | LOC_Os09g15610 |
Deletions: 90
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 133001 | 167000 | 33999 | 4 |
Deletion | Chr10 | 1020151 | 1020152 | 1 | LOC_Os10g02640 |
Deletion | Chr11 | 1024001 | 1048000 | 23999 | 6 |
Deletion | Chr11 | 1135001 | 1227000 | 91999 | 13 |
Deletion | Chr3 | 2057191 | 2057195 | 4 | LOC_Os03g04430 |
Deletion | Chr9 | 2843673 | 2843674 | 1 | |
Deletion | Chr10 | 3453028 | 3453080 | 52 | |
Deletion | Chr10 | 4689001 | 4735000 | 45999 | 9 |
Deletion | Chr3 | 5197126 | 5197127 | 1 | |
Deletion | Chr8 | 5894001 | 5907000 | 12999 | 3 |
Deletion | Chr7 | 6161001 | 6173000 | 11999 | 4 |
Deletion | Chr7 | 6510001 | 6534000 | 23999 | 4 |
Deletion | Chr8 | 7060001 | 7087000 | 26999 | 2 |
Deletion | Chr9 | 7160001 | 7171000 | 10999 | LOC_Os09g12900 |
Deletion | Chr5 | 7569029 | 7569030 | 1 | |
Deletion | Chr5 | 7868001 | 7894000 | 25999 | 5 |
Deletion | Chr1 | 7971764 | 7971766 | 2 | |
Deletion | Chr2 | 8341218 | 8341219 | 1 | |
Deletion | Chr11 | 8482001 | 8500000 | 17999 | 4 |
Deletion | Chr4 | 8772001 | 8809000 | 36999 | 6 |
Deletion | Chr9 | 8820386 | 8820387 | 1 | |
Deletion | Chr10 | 9054001 | 9066000 | 11999 | 3 |
Deletion | Chr9 | 9120001 | 9133000 | 12999 | LOC_Os09g15120 |
Deletion | Chr9 | 9175001 | 9193000 | 17999 | 3 |
Deletion | Chr7 | 9367001 | 9391000 | 23999 | 6 |
Deletion | Chr6 | 9453376 | 9453377 | 1 | |
Deletion | Chr11 | 9703001 | 9728000 | 24999 | 4 |
Deletion | Chr12 | 9895001 | 9912000 | 16999 | 3 |
Deletion | Chr11 | 10299001 | 10319000 | 19999 | 3 |
Deletion | Chr8 | 10382955 | 10382956 | 1 | |
Deletion | Chr5 | 10631001 | 10670000 | 38999 | 4 |
Deletion | Chr11 | 10659001 | 10690000 | 30999 | 4 |
Deletion | Chr4 | 10752001 | 10772000 | 19999 | 4 |
Deletion | Chr5 | 10968001 | 10990000 | 21999 | 4 |
Deletion | Chr9 | 11027001 | 11050000 | 22999 | 2 |
Deletion | Chr11 | 11071001 | 11083000 | 11999 | 2 |
Deletion | Chr10 | 11127001 | 11142000 | 14999 | LOC_Os10g21720 |
Deletion | Chr11 | 11309001 | 11331000 | 21999 | 6 |
Deletion | Chr3 | 11545001 | 11566000 | 20999 | 3 |
Deletion | Chr12 | 11581225 | 11581226 | 1 | |
Deletion | Chr12 | 11760001 | 11790000 | 29999 | 3 |
Deletion | Chr5 | 11928001 | 11950000 | 21999 | 5 |
Deletion | Chr5 | 11983001 | 12009000 | 25999 | 4 |
Deletion | Chr6 | 12120001 | 12149000 | 28999 | 7 |
Deletion | Chr5 | 12188001 | 12204000 | 15999 | 4 |
Deletion | Chr8 | 13288765 | 13288766 | 1 | |
Deletion | Chr9 | 13390001 | 13406000 | 15999 | 4 |
Deletion | Chr2 | 13532001 | 13558000 | 25999 | 6 |
Deletion | Chr9 | 13710546 | 13710562 | 16 | |
Deletion | Chr4 | 14113001 | 14128000 | 14999 | 2 |
Deletion | Chr12 | 14138001 | 14164000 | 25999 | 3 |
Deletion | Chr6 | 14302001 | 14334000 | 31999 | 5 |
Deletion | Chr7 | 14681001 | 14691000 | 9999 | LOC_Os07g26110 |
Deletion | Chr4 | 14883402 | 14883403 | 1 | |
Deletion | Chr2 | 15046001 | 15067000 | 20999 | 3 |
Deletion | Chr8 | 15790001 | 15815000 | 24999 | 4 |
Deletion | Chr1 | 15924001 | 15956000 | 31999 | 5 |
Deletion | Chr7 | 15974001 | 15991000 | 16999 | 3 |
Deletion | Chr6 | 16556001 | 16574000 | 17999 | 2 |
Deletion | Chr1 | 16782225 | 16782273 | 48 | |
Deletion | Chr4 | 16995001 | 17005000 | 9999 | LOC_Os04g29210 |
Deletion | Chr6 | 17029001 | 17061000 | 31999 | 3 |
Deletion | Chr6 | 17321001 | 17331000 | 9999 | LOC_Os06g30160 |
Deletion | Chr7 | 17349001 | 17372000 | 22999 | 3 |
Deletion | Chr10 | 18460001 | 18474000 | 13999 | 3 |
Deletion | Chr8 | 18650001 | 18672000 | 21999 | 3 |
Deletion | Chr5 | 18660001 | 18682000 | 21999 | 4 |
Deletion | Chr8 | 18845001 | 18861000 | 15999 | 2 |
Deletion | Chr1 | 19412001 | 19438000 | 25999 | 6 |
Deletion | Chr5 | 19547001 | 19572000 | 24999 | 2 |
Deletion | Chr4 | 20610732 | 20610735 | 3 | LOC_Os04g34030 |
Deletion | Chr11 | 20924001 | 20942000 | 17999 | 2 |
Deletion | Chr11 | 21086001 | 21118000 | 31999 | 4 |
Deletion | Chr12 | 21678185 | 21678192 | 7 | |
Deletion | Chr9 | 22453001 | 22495000 | 41999 | 6 |
Deletion | Chr7 | 22684001 | 22721000 | 36999 | 7 |
Deletion | Chr6 | 23328260 | 23328267 | 7 | LOC_Os06g39310 |
Deletion | Chr5 | 23613535 | 23613553 | 18 | |
Deletion | Chr3 | 23635076 | 23635090 | 14 | |
Deletion | Chr6 | 24641001 | 24666000 | 24999 | 2 |
Deletion | Chr5 | 26109001 | 26123000 | 13999 | 3 |
Deletion | Chr5 | 26172764 | 26172770 | 6 | |
Deletion | Chr7 | 26884001 | 26910000 | 25999 | 3 |
Deletion | Chr5 | 27577234 | 27577235 | 1 | |
Deletion | Chr2 | 27887001 | 27907000 | 19999 | 4 |
Deletion | Chr11 | 28616920 | 28616921 | 1 | |
Deletion | Chr3 | 32220001 | 32232000 | 11999 | 3 |
Deletion | Chr4 | 32247001 | 32260000 | 12999 | 3 |
Deletion | Chr3 | 32928478 | 32928480 | 2 | LOC_Os03g57780 |
Deletion | Chr1 | 37116001 | 37141000 | 24999 | 4 |
Insertions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 32203661 | 32203666 | 6 | |
Insertion | Chr1 | 42829914 | 42829914 | 1 | |
Insertion | Chr10 | 13534108 | 13534123 | 16 | |
Insertion | Chr11 | 14263808 | 14263821 | 14 | |
Insertion | Chr12 | 13318573 | 13318573 | 1 | |
Insertion | Chr12 | 16866528 | 16866531 | 4 | |
Insertion | Chr5 | 2429594 | 2429594 | 1 | LOC_Os05g05000![]() |
Insertion | Chr6 | 1338433 | 1338444 | 12 | |
Insertion | Chr6 | 18938515 | 18938515 | 1 | |
Insertion | Chr6 | 30884956 | 30884957 | 2 | |
Insertion | Chr8 | 16304682 | 16304682 | 1 | |
Insertion | Chr9 | 12139569 | 12139580 | 12 | |
Insertion | Chr9 | 2821364 | 2821364 | 1 | |
Insertion | Chr9 | 5730512 | 5730512 | 1 |
No Inversion
Translocations: 8
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 1091550 | Chr10 | 10099007 | |
Translocation | Chr10 | 6132949 | Chr9 | 2799476 | |
Translocation | Chr10 | 12703351 | Chr2 | 20742928 | |
Translocation | Chr11 | 17836756 | Chr10 | 12209864 | |
Translocation | Chr11 | 19804901 | Chr3 | 23443198 | |
Translocation | Chr11 | 20126934 | Chr3 | 8265184 | |
Translocation | Chr8 | 24077247 | Chr4 | 20494329 | |
Translocation | Chr11 | 28306474 | Chr3 | 25611595 |