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Mutant Information

Mutant NameFN3119-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3119-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 38
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr129297880G-THETINTERGENIC
SBSChr141345231C-THETINTERGENIC
SBSChr1115163986C-GHETINTERGENIC
SBSChr112313739G-CHETNON_SYNONYMOUS_CODINGLOC_Os11g05220
SBSChr112313741G-AHETSYNONYMOUS_CODING
SBSChr117514701T-CHETINTRON
SBSChr119636303C-THETINTRON
SBSChr1219542873G-THOMOINTERGENIC
SBSChr215749126G-AHETINTERGENIC
SBSChr216006306T-AHETINTERGENIC
SBSChr216304453A-THETINTERGENIC
SBSChr28387888C-THETINTERGENIC
SBSChr316153517G-THOMOUTR_3_PRIME
SBSChr324402660G-THOMONON_SYNONYMOUS_CODINGLOC_Os03g43650
SBSChr326596222A-GHOMOINTERGENIC
SBSChr332946484A-THETNON_SYNONYMOUS_CODINGLOC_Os03g57820
SBSChr334335037T-AHETINTRON
SBSChr38336329C-THETINTERGENIC
SBSChr417161327C-THETINTERGENIC
SBSChr417676636G-AHETINTERGENIC
SBSChr419978087C-THETINTERGENIC
SBSChr42253023A-THOMOINTERGENIC
SBSChr429979135G-AHOMOINTERGENIC
SBSChr429979136C-THOMOINTERGENIC
SBSChr46903850C-GHETNON_SYNONYMOUS_CODINGLOC_Os04g12480
SBSChr513817464A-THETINTRON
SBSChr51601834C-AHETINTERGENIC
SBSChr51829761G-AHETSYNONYMOUS_CODING
SBSChr613075081T-CHOMONON_SYNONYMOUS_CODINGLOC_Os06g22500
SBSChr624591372T-CHOMOINTERGENIC
SBSChr629605079G-THETINTRON
SBSChr720570719C-THETINTERGENIC
SBSChr826389723C-THETINTERGENIC
SBSChr84203273C-THETINTERGENIC
SBSChr8771383A-THETINTERGENIC
SBSChr917184151G-AHETSYNONYMOUS_CODING
SBSChr97769519C-AHETINTERGENIC
SBSChr99531671C-THETSPLICE_SITE_ACCEPTORLOC_Os09g15610

Deletions: 90
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr4133001167000339994
DeletionChr10102015110201521LOC_Os10g02640
DeletionChr1110240011048000239996
DeletionChr11113500112270009199913
DeletionChr3205719120571954LOC_Os03g04430
DeletionChr9284367328436741
DeletionChr103453028345308052
DeletionChr1046890014735000459999
DeletionChr3519712651971271
DeletionChr858940015907000129993
DeletionChr761610016173000119994
DeletionChr765100016534000239994
DeletionChr870600017087000269992
DeletionChr97160001717100010999LOC_Os09g12900
DeletionChr5756902975690301
DeletionChr578680017894000259995
DeletionChr1797176479717662
DeletionChr2834121883412191
DeletionChr1184820018500000179994
DeletionChr487720018809000369996
DeletionChr9882038688203871
DeletionChr1090540019066000119993
DeletionChr99120001913300012999LOC_Os09g15120
DeletionChr991750019193000179993
DeletionChr793670019391000239996
DeletionChr6945337694533771
DeletionChr1197030019728000249994
DeletionChr1298950019912000169993
DeletionChr111029900110319000199993
DeletionChr810382955103829561
DeletionChr51063100110670000389994
DeletionChr111065900110690000309994
DeletionChr41075200110772000199994
DeletionChr51096800110990000219994
DeletionChr91102700111050000229992
DeletionChr111107100111083000119992
DeletionChr10111270011114200014999LOC_Os10g21720
DeletionChr111130900111331000219996
DeletionChr31154500111566000209993
DeletionChr1211581225115812261
DeletionChr121176000111790000299993
DeletionChr51192800111950000219995
DeletionChr51198300112009000259994
DeletionChr61212000112149000289997
DeletionChr51218800112204000159994
DeletionChr813288765132887661
DeletionChr91339000113406000159994
DeletionChr21353200113558000259996
DeletionChr9137105461371056216
DeletionChr41411300114128000149992
DeletionChr121413800114164000259993
DeletionChr61430200114334000319995
DeletionChr714681001146910009999LOC_Os07g26110
DeletionChr414883402148834031
DeletionChr21504600115067000209993
DeletionChr81579000115815000249994
DeletionChr11592400115956000319995
DeletionChr71597400115991000169993
DeletionChr61655600116574000179992
DeletionChr1167822251678227348
DeletionChr416995001170050009999LOC_Os04g29210
DeletionChr61702900117061000319993
DeletionChr617321001173310009999LOC_Os06g30160
DeletionChr71734900117372000229993
DeletionChr101846000118474000139993
DeletionChr81865000118672000219993
DeletionChr51866000118682000219994
DeletionChr81884500118861000159992
DeletionChr11941200119438000259996
DeletionChr51954700119572000249992
DeletionChr420610732206107353LOC_Os04g34030
DeletionChr112092400120942000179992
DeletionChr112108600121118000319994
DeletionChr1221678185216781927
DeletionChr92245300122495000419996
DeletionChr72268400122721000369997
DeletionChr623328260233282677LOC_Os06g39310
DeletionChr5236135352361355318
DeletionChr3236350762363509014
DeletionChr62464100124666000249992
DeletionChr52610900126123000139993
DeletionChr526172764261727706
DeletionChr72688400126910000259993
DeletionChr527577234275772351
DeletionChr22788700127907000199994
DeletionChr1128616920286169211
DeletionChr33222000132232000119993
DeletionChr43224700132260000129993
DeletionChr332928478329284802LOC_Os03g57780
DeletionChr13711600137141000249994

Insertions: 14
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr132203661322036666
InsertionChr142829914428299141
InsertionChr10135341081353412316
InsertionChr11142638081426382114
InsertionChr1213318573133185731
InsertionChr1216866528168665314
InsertionChr5242959424295941LOC_Os05g05000image
InsertionChr61338433133844412
InsertionChr618938515189385151
InsertionChr630884956308849572
InsertionChr816304682163046821
InsertionChr9121395691213958012
InsertionChr9282136428213641
InsertionChr9573051257305121

No Inversion

Translocations: 8
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr111091550Chr1010099007
TranslocationChr106132949Chr92799476
TranslocationChr1012703351Chr220742928
TranslocationChr1117836756Chr1012209864
TranslocationChr1119804901Chr323443198
TranslocationChr1120126934Chr38265184
TranslocationChr824077247Chr420494329
TranslocationChr1128306474Chr325611595