Search Results

Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25662281	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45220
SBS	Chr1	25662282	G-A	HET	STOP_GAINED	LOC_Os01g45220
SBS	Chr1	30808855	T-A	HET	INTERGENIC
SBS	Chr1	36116700	T-G	HET	INTERGENIC
SBS	Chr1	37533038	T-C	HET	INTERGENIC
SBS	Chr2	1270309	T-C	HET	INTERGENIC
SBS	Chr2	2446226	G-T	HET	INTERGENIC
SBS	Chr2	7236977	C-A	HET	INTERGENIC
SBS	Chr2	16129842	C-T	HET	INTERGENIC
SBS	Chr2	17603592	T-C	HET	INTERGENIC
SBS	Chr3	14795365	A-G	HET	INTRON
SBS	Chr3	15788092	T-A	HET	INTRON
SBS	Chr3	27392532	A-T	HET	INTERGENIC
SBS	Chr4	7420514	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13350
SBS	Chr4	10939431	A-T	HET	INTRON
SBS	Chr4	10972408	C-T	HET	INTERGENIC
SBS	Chr4	14908388	G-C	HET	INTERGENIC
SBS	Chr5	211400	G-A	HOMO	INTERGENIC
SBS	Chr5	211406	G-A	HOMO	INTERGENIC
SBS	Chr5	9847410	C-T	HOMO	INTERGENIC
SBS	Chr6	592202	T-A	HET	UTR_3_PRIME
SBS	Chr6	11579510	T-C	HET	INTERGENIC
SBS	Chr6	14270898	C-T	HOMO	INTERGENIC
SBS	Chr6	21417549	C-T	HOMO	INTRON
SBS	Chr6	29987791	C-T	HET	INTERGENIC
SBS	Chr7	4240740	C-T	HOMO	INTRON
SBS	Chr7	21176489	A-G	HET	INTRON
SBS	Chr7	22224792	T-A	HET	INTERGENIC
SBS	Chr7	23256190	G-A	HET	INTERGENIC
SBS	Chr7	23256191	G-A	HET	INTERGENIC
SBS	Chr7	25283413	G-A	HET	INTERGENIC
SBS	Chr7	28914670	G-A	HOMO	INTERGENIC
SBS	Chr7	29676323	A-T	HOMO	INTERGENIC
SBS	Chr8	6988079	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	7392355	T-G	HET	INTERGENIC
SBS	Chr10	1899448	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g04110
SBS	Chr10	5082311	T-C	HET	INTERGENIC
SBS	Chr10	5353240	G-T	HET	INTERGENIC
SBS	Chr10	17472312	G-A	HET	INTRON
SBS	Chr11	12641080	C-T	HOMO	INTERGENIC
SBS	Chr11	14087894	C-G	HOMO	INTERGENIC
SBS	Chr12	8374162	G-A	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	263229	263230	1
Deletion	Chr8	430819	430829	10
Deletion	Chr8	2103867	2103897	30
Deletion	Chr10	2579147	2579148	1
Deletion	Chr6	4524273	4524285	12
Deletion	Chr9	4904955	4904963	8
Deletion	Chr10	4908267	4908309	42
Deletion	Chr11	5970001	5979000	8999	3
Deletion	Chr10	6855452	6855453	1
Deletion	Chr11	7286199	7286200	1
Deletion	Chr9	7988496	7988509	13	LOC_Os09g13670
Deletion	Chr8	8130054	8130056	2
Deletion	Chr9	10257653	10257654	1
Deletion	Chr5	10637001	10670000	32999	4
Deletion	Chr12	12029895	12029896	1
Deletion	Chr11	12299823	12299988	165
Deletion	Chr11	12327967	12327968	1
Deletion	Chr5	13116286	13116292	6
Deletion	Chr3	14412655	14412665	10
Deletion	Chr4	14979650	14979656	6
Deletion	Chr1	14981503	14981504	1
Deletion	Chr5	15316692	15316693	1
Deletion	Chr10	17004309	17004313	4
Deletion	Chr8	20767901	20767910	9
Deletion	Chr2	21652313	21652314	1
Deletion	Chr6	25479519	25479540	21
Deletion	Chr3	30121001	30151000	29999	8
Deletion	Chr1	34925376	34925379	3	LOC_Os01g60380
Deletion	Chr3	35370486	35370487	1
Deletion	Chr1	37216456	37216458	2	LOC_Os01g64070

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	169904	169909	6
Insertion	Chr5	2212801	2212802	2
Insertion	Chr8	2693342	2693343	2
Insertion	Chr9	4781773	4781774	2
Insertion	Chr1	34932501	34932501	1
Insertion	Chr3	19578743	19578743	1
Insertion	Chr3	23143532	23143532	1	LOC_Os03g41624
Insertion	Chr4	13744416	13744416	1	LOC_Os04g24060
Insertion	Chr5	29879238	29879238	1
Insertion	Chr6	10332684	10332684	1	LOC_Os06g17820
Insertion	Chr7	24860406	24860406	1
Insertion	Chr10	2381387	2381387	1
Insertion	Chr12	15945101	15945101	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	26191753	26202278
Inversion	Chr1	26191757	26203109

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2005216	Chr6	23454864
Translocation	Chr11	3916293	Chr9	7742217
Translocation	Chr10	5024912	Chr7	18415509
Translocation	Chr9	6626482	Chr7	12641493	LOC_Os07g22480
Translocation	Chr9	6626483	Chr1	33271556
Translocation	Chr9	8774247	Chr1	33271563
Translocation	Chr9	8774253	Chr7	12642586
Translocation	Chr6	8843365	Chr4	843232
Translocation	Chr8	9306285	Chr3	19340972	2
Translocation	Chr7	9479904	Chr4	21780655
Translocation	Chr5	16465941	Chr1	22929326	LOC_Os01g40600
Translocation	Chr2	16491378	Chr1	26063488	2
Translocation	Chr12	16959285	Chr8	6751662
Translocation	Chr6	18208057	Chr4	19200853
Translocation	Chr11	24611690	Chr2	16445387

Main menu