Search Results


Mutant Information

Mutant NameFN3126-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3126-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 47
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr112286822C-THETINTERGENIC
SBSChr116444516G-THETINTERGENIC
SBSChr120971650C-THETNON_SYNONYMOUS_CODINGLOC_Os01g37550
SBSChr128859116G-AHOMONON_SYNONYMOUS_CODINGLOC_Os01g50220
SBSChr135924885G-AHOMOUTR_3_PRIME
SBSChr21176519C-AHOMOINTRON
SBSChr224462536C-THOMOSYNONYMOUS_CODING
SBSChr229132868A-GHETINTERGENIC
SBSChr232601432C-THETINTERGENIC
SBSChr234790414C-THETINTRON
SBSChr32776482A-THOMOINTERGENIC
SBSChr311710311T-CHETINTERGENIC
SBSChr319156656T-AHETNON_SYNONYMOUS_CODINGLOC_Os03g33530
SBSChr335103507C-THOMOUTR_3_PRIME
SBSChr47014057G-AHOMOINTERGENIC
SBSChr413384169A-CHOMONON_SYNONYMOUS_CODINGLOC_Os04g23410
SBSChr413384170G-THOMONON_SYNONYMOUS_CODINGLOC_Os04g23410
SBSChr415860166A-CHETINTERGENIC
SBSChr426665534C-THOMONON_SYNONYMOUS_CODINGLOC_Os04g45070
SBSChr434131011C-AHETUTR_5_PRIME
SBSChr55719228G-THETNON_SYNONYMOUS_CODINGLOC_Os05g10520
SBSChr519583867A-CHOMOINTRON
SBSChr519840224G-AHOMOINTRON
SBSChr520219596C-THOMONON_SYNONYMOUS_CODINGLOC_Os05g34190
SBSChr617230264G-AHETINTRON
SBSChr624677958G-AHETINTERGENIC
SBSChr717082118G-AHETINTERGENIC
SBSChr720825182A-THOMOINTERGENIC
SBSChr88186516C-THOMONON_SYNONYMOUS_CODINGLOC_Os08g13720
SBSChr819865669G-CHOMONON_SYNONYMOUS_CODINGLOC_Os08g32020
SBSChr820690722C-THOMOINTERGENIC
SBSChr9663641G-AHETINTERGENIC
SBSChr91309679A-GHETNON_SYNONYMOUS_CODINGLOC_Os09g02810
SBSChr92163054C-THETINTERGENIC
SBSChr92207597G-AHETINTRON
SBSChr92916415T-AHETINTRON
SBSChr97512616G-AHETNON_SYNONYMOUS_CODINGLOC_Os09g13020
SBSChr98557314G-AHETINTERGENIC
SBSChr98557408T-GHETINTERGENIC
SBSChr98557458A-GHETINTERGENIC
SBSChr919200552C-THOMOINTRON
SBSChr922061151C-AHOMOINTERGENIC
SBSChr101361274C-GHETINTERGENIC
SBSChr1016611976C-THOMOINTERGENIC
SBSChr1113551570G-AHETINTERGENIC
SBSChr1214785123C-GHETINTERGENIC
SBSChr1227446979G-AHETNON_SYNONYMOUS_CODINGLOC_Os12g44280

Deletions: 838
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr6107001121000139993
DeletionChr4145001173000279992
DeletionChr3210001225000149992
DeletionChr7349001363000139993
DeletionChr10519001554000349997
DeletionChr10590001640000499998
DeletionChr96110016180006999LOC_Os09g01980
DeletionChr6645001657000119992
DeletionChr4695001708000129993
DeletionChr12740001764000239993
DeletionChr107570017660008999LOC_Os10g02509
DeletionChr7774001788000139992
DeletionChr880700182100013999LOC_Os08g02340
DeletionChr8908001927000189992
DeletionChr7921001948000269997
DeletionChr10939001104900010999916
DeletionChr11020001103500014999LOC_Os01g07830
DeletionChr1110210011044000229995
DeletionChr510360011072000359996
DeletionChr51119001113000010999LOC_Os05g04410
DeletionChr611510011165000139992
DeletionChr911830011210000269992
DeletionChr81271839127192384
DeletionChr213540011377000229995
DeletionChr313640011391000269994
DeletionChr414060011420000139994
DeletionChr1214210011457000359996
DeletionChr414330011456000229996
DeletionChr2145830914583167
DeletionChr414760011503000269994
DeletionChr1215250011543000179995
DeletionChr415930011649000559999
DeletionChr216320011647000149993
DeletionChr916380011678000399994
DeletionChr41660001168100020999LOC_Os04g03760
DeletionChr916850011711000259997
DeletionChr1217100011728000179997
DeletionChr417900011810000199996
DeletionChr818070011824000169992
DeletionChr318660011902000359997
DeletionChr418840011903000189992
DeletionChr4192998619299871
DeletionChr419350011982000469998
DeletionChr91974001198300089992
DeletionChr82061001207000089993
DeletionChr922020012219000169993
DeletionChr1022300012273000429997
DeletionChr82246001226300016999LOC_Os08g05370
DeletionChr722620012275000129992
DeletionChr1122930012332000389997
DeletionChr102296001230800011999LOC_Os10g05560
DeletionChr624030012420000169994
DeletionChr2244000124890004899910
DeletionChr924500012494000439996
DeletionChr926680012687000189994
DeletionChr1226890012707000179994
DeletionChr92808001285900050999
DeletionChr828350012883000479998
DeletionChr228890012919000299994
DeletionChr328900012904000139993
DeletionChr8305100130920004099911
DeletionChr430890013152000629998
DeletionChr931120013125000129992
DeletionChr1231230013148000249993
DeletionChr232290013248000189995
DeletionChr632400013251000109992
DeletionChr532580013277000189994
DeletionChr10326700133080004099910
DeletionChr932970013335000379994
DeletionChr233600013374000139992
DeletionChr1233670013390000229993
DeletionChr733760013443000669998
DeletionChr434390013456000169992
DeletionChr434700013485000149993
DeletionChr8350200135120009999LOC_Os08g07080
DeletionChr1135500013590000399997
DeletionChr1136310013671000399997
DeletionChr1036380013666000279993
DeletionChr1036820013720000379994
DeletionChr637170013763000459999
DeletionChr10382600138360009999LOC_Os10g08002
DeletionChr238690013900000309996
DeletionChr338750013887000119992
DeletionChr11391100139570004599912
DeletionChr839550014001000459996
DeletionChr1139930014005000119993
DeletionChr940000014034000339994
DeletionChr940700014088000179993
DeletionChr1241330014159000259992
DeletionChr341430014162000189995
DeletionChr941720014187000149992
DeletionChr942320014250000179992
DeletionChr742450014262000169992
DeletionChr842480014280000319996
DeletionChr12428700143340004699910
DeletionChr104297001443900014199927
DeletionChr743740014397000229993
DeletionChr11438800144640007599914
DeletionChr1044560014485000289995
DeletionChr744600014480000199995
DeletionChr844760014505000289993
DeletionChr114525001455700031999LOC_Os11g10250
DeletionChr10453600145460009999LOC_Os10g08440
DeletionChr445640014613000489995
DeletionChr1045830014604000209994
DeletionChr10468500147380005299911
DeletionChr547510014769000179993
DeletionChr947630014794000309995
DeletionChr748340014881000469998
DeletionChr348900014914000239996
DeletionChr948920014912000199993
DeletionChr1049200014933000129992
DeletionChr349310014947000159993
DeletionChr949520014992000399997
DeletionChr750220015068000459995
DeletionChr850720015101000289995
DeletionChr55077001509200014999LOC_Os05g09220
DeletionChr1251220015148000259993
DeletionChr551530015176000229996
DeletionChr451800015209000289997
DeletionChr8519217551921772
DeletionChr1252810015309000279993
DeletionChr1053310015364000329995
DeletionChr653790015394000149993
DeletionChr454900015515000249994
DeletionChr105528001554600017999LOC_Os10g10280
DeletionChr955610015580000189993
DeletionChr1155660015580000139993
DeletionChr7556852955685367
DeletionChr755690015585000159992
DeletionChr45614001562900014999LOC_Os04g10380
DeletionChr1056470015660000129993
DeletionChr5565600156960003999910
DeletionChr1156710015699000279993
DeletionChr157280015761000329999
DeletionChr1157930015829000359997
DeletionChr55825001584100015999LOC_Os05g10660
DeletionChr758270015854000269994
DeletionChr1158850015908000229995
DeletionChr858910015907000159993
DeletionChr359120015932000199992
DeletionChr559370015955000179992
DeletionChr359560015975000189994
DeletionChr1059850016010000249994
DeletionChr65988001600200013999
DeletionChr860090016042000329993
DeletionChr660320016043000109992
DeletionChr460700016099000289995
DeletionChr1060890016109000199993
DeletionChr9612100161700004899912
DeletionChr1161760016201000249993
DeletionChr1061830016220000369995
DeletionChr461950016216000209992
DeletionChr462260016247000209994
DeletionChr262460016266000199994
DeletionChr962880016304000159993
DeletionChr163210016339000179992
DeletionChr963520016382000299994
DeletionChr465240016542000179992
DeletionChr565520016580000279994
DeletionChr1066000016620000199993
DeletionChr966500016733000829999
DeletionChr566660016703000369995
DeletionChr9669935566993561
DeletionChr106754001676400099993
DeletionChr967570016789000319994
DeletionChr767630016823000599999
DeletionChr1268610016886000249994
DeletionChr106907001692100013999LOC_Os10g12520
DeletionChr169090016935000259996
DeletionChr769330016949000159992
DeletionChr1069540017021000669999
DeletionChr76981001700700025999LOC_Os07g12350
DeletionChr570460017092000459996
DeletionChr870510017090000389992
DeletionChr970930017110000169993
DeletionChr171160017143000269992
DeletionChr471180017135000169993
DeletionChr1272060017220000139992
DeletionChr1072200017268000479997
DeletionChr1072720017330000579997
DeletionChr772850017302000169992
DeletionChr774250017447000219993
DeletionChr9742800174370008999LOC_Os09g13770
DeletionChr7747800175380005999910
DeletionChr374910017515000239994
DeletionChr775900017653000629998
DeletionChr1176670017687000199993
DeletionChr677090017737000279993
DeletionChr1177160017738000219993
DeletionChr278020017814000119992
DeletionChr3783800178720003399910
DeletionChr7786300179150005199910
DeletionChr578700017894000239994
DeletionChr47926001794000013999LOC_Os04g14210
DeletionChr379590017974000149992
DeletionChr479750018014000389998
DeletionChr679760018008000319996
DeletionChr880280018042000139994
DeletionChr880470018074000269996
DeletionChr1080690018088000189993
DeletionChr780950018108000129995
DeletionChr1181100018126000159992
DeletionChr481500018169000189992
DeletionChr5815868781586881
DeletionChr181680018185000169994
DeletionChr781730018188000149992
DeletionChr11822100182740005299911
DeletionChr58225001825600030999LOC_Os05g14540
DeletionChr482850018303000179993
DeletionChr982950018357000619998
DeletionChr783880018405000169992
DeletionChr284030018438000349997
DeletionChr584050018419000139992
DeletionChr1284290018446000169994
DeletionChr1184660018499000329996
DeletionChr685030018546000429997
DeletionChr185080018520000119992
DeletionChr585210018539000179992
DeletionChr1185810018610000289994
DeletionChr11874100188340009299915
DeletionChr687690018794000249996
DeletionChr487760018817000409997
DeletionChr787930018813000199994
DeletionChr488810018926000449998
DeletionChr11888400189290004499910
DeletionChr989900019014000239992
DeletionChr6899300190030009999LOC_Os06g15850
DeletionChr590040019032000279994
DeletionChr1190340019055000209992
DeletionChr8904000190490008999LOC_Os08g15290
DeletionChr1090500019078000279993
DeletionChr490660019078000119992
DeletionChr1090830019110000269993
DeletionChr790870019117000299993
DeletionChr691110019162000509998
DeletionChr99116001913600019999LOC_Os09g15070
DeletionChr791390019180000409997
DeletionChr591960019250000539998
DeletionChr1191970019213000159993
DeletionChr119230001935600012599920
DeletionChr692610019278000169992
DeletionChr79295001931400018999LOC_Os07g16070
DeletionChr892970019318000209994
DeletionChr793750019394000189994
DeletionChr4945218294521842
DeletionChr894570019477000199995
DeletionChr495020019516000139995
DeletionChr1195030019553000499995
DeletionChr895330019558000249997
DeletionChr895710019617000459994
DeletionChr295720019590000179995
DeletionChr796050019625000199993
DeletionChr1296180019641000229994
DeletionChr896420019679000369994
DeletionChr119658001966800099992
DeletionChr796630019679000159993
DeletionChr1197020019727000249995
DeletionChr5971200197500003799911
DeletionChr397750019813000379995
DeletionChr59778001979600017999LOC_Os05g17120
DeletionChr698200019852000319994
DeletionChr898490019873000239994
DeletionChr49860782986082543
DeletionChr898820019909000269994
DeletionChr129898001990800099993
DeletionChr8992600199340007999LOC_Os08g16410
DeletionChr8993101999310223
DeletionChr11998500110008000229993
DeletionChr81003400110047000129992
DeletionChr41010600110123000169996
DeletionChr91014700110174000269994
DeletionChr111014900110167000179992
DeletionChr21015300110183000299995
DeletionChr81019900110211000119993
DeletionChr410208001102660005799911
DeletionChr11022900110259000299993
DeletionChr4102295081022953729LOC_Os04g18500
DeletionChr51023200110281000489999
DeletionChr111029400110346000519996
DeletionChr9103127121031272816LOC_Os09g16880
DeletionChr51032000110357000369995
DeletionChr71033900110367000279994
DeletionChr810406001104640005799911
DeletionChr41049200110515000229995
DeletionChr11105460011069300014699916
DeletionChr41058400110617000329995
DeletionChr71061400110654000399996
DeletionChr41064800110671000229994
DeletionChr41075300110775000219994
DeletionChr111083900110857000179994
DeletionChr81085800110876000179992
DeletionChr41086100110882000209994
DeletionChr1010865784108657851
DeletionChr31086700110899000319992
DeletionChr81089100110916000249992
DeletionChr31091600110929000129993
DeletionChr7109480011108100013299922
DeletionChr91095700110979000219993
DeletionChr81098100110994000129994
DeletionChr11101300111041000279992
DeletionChr91101900111052000329992
DeletionChr101106900111099000299994
DeletionChr31110100111126000249992
DeletionChr101113100111178000469997
DeletionChr51115700111180000229993
DeletionChr121116300111174000109993
DeletionChr121121200111243000309992
DeletionChr12112630011128300019999LOC_Os12g19530
DeletionChr91127100111313000419999
DeletionChr101128500111302000169992
DeletionChr111130500111330000249996
DeletionChr41131000111340000299993
DeletionChr3113300011135400023999LOC_Os03g20190
DeletionChr91133200111350000179993
DeletionChr1113329911133306069LOC_Os01g19960
DeletionChr101134100111355000139992
DeletionChr121135200111365000129992
DeletionChr5113960011140900012999LOC_Os05g19930
DeletionChr31141100111435000239996
DeletionChr111141900111434000149992
DeletionChr121144800111466000179995
DeletionChr111147800111538000599999
DeletionChr11151300111543000299994
DeletionChr811528373115283752
DeletionChr41159100111634000429995
DeletionChr81161100111633000219994
DeletionChr51162900111655000259992
DeletionChr2116660011167600099992
DeletionChr11171600111739000229994
DeletionChr121175900111783000239993
DeletionChr21179900111816000169993
DeletionChr81180200111830000279995
DeletionChr121182700111860000329994
DeletionChr61183900111860000209994
DeletionChr101185000111867000169993
DeletionChr121188000111891000109992
DeletionChr61189500111906000109992
DeletionChr5119130011201500010199915
DeletionChr612002458120024591
DeletionChr31200500112016000109993
DeletionChr11203400112056000219993
DeletionChr101204800112070000219993
DeletionChr61205100112074000229993
DeletionChr41206900112096000269994
DeletionChr612114001121740005999912
DeletionChr11211900112144000249993
DeletionChr101213300112170000369995
DeletionChr31216300112189000259993
DeletionChr12121740011218300089993
DeletionChr11218300112197000139992
DeletionChr612216316122163193
DeletionChr61228200112318000359998
DeletionChr512287001123590007199911
DeletionChr41230500112322000169993
DeletionChr121236900112387000179993
DeletionChr11247300112490000169993
DeletionChr41249300112514000209994
DeletionChr4125550011272100016599932
DeletionChr81260600112638000319995
DeletionChr101268500112709000239993
DeletionChr111275600112774000179995
DeletionChr41276100112779000179994
DeletionChr41280000112828000279995
DeletionChr121281300112837000239996
DeletionChr91284500112871000259994
DeletionChr31287100112889000179993
DeletionChr10129060011291900012999LOC_Os10g25200
DeletionChr111292700112963000359995
DeletionChr31297000113005000349993
DeletionChr8129860011300700020999LOC_Os08g22610
DeletionChr111299200113010000179995
DeletionChr10130100011301900089993
DeletionChr613030001130930006299911
DeletionChr51303400113070000359993
DeletionChr71308600113118000319994
DeletionChr41313200113164000319993
DeletionChr61316900113183000139994
DeletionChr11321400113231000169994
DeletionChr101323500113252000169992
DeletionChr61325600113272000159993
DeletionChr1132930011330200089992
DeletionChr121329500113309000139992
DeletionChr91331900113341000219994
DeletionChr71334800113375000269998
DeletionChr713353497133534992
DeletionChr913389001134560006699913
DeletionChr1113426452134264531
DeletionChr51343900113465000259992
DeletionChr21345300113469000159993
DeletionChr41345500113531000759999
DeletionChr713474001135710009699911
DeletionChr21352600113561000349998
DeletionChr41354400113562000179994
DeletionChr513547806135478126
DeletionChr6135690011357800089993
DeletionChr41357000113607000369994
DeletionChr121358300113610000269994
DeletionChr71358700113615000279994
DeletionChr81360500113621000159994
DeletionChr61363000113649000189996
DeletionChr51368700113717000299995
DeletionChr61371500113726000109992
DeletionChr111372700113755000279992
DeletionChr10137300011375400023999LOC_Os10g28420
DeletionChr51374300113755000119992
DeletionChr51378700113801000139992
DeletionChr1113797001138060008999LOC_Os11g24810
DeletionChr71382500113862000369995
DeletionChr61383400113870000359994
DeletionChr11388400113900000159994
DeletionChr61392700113950000229994
DeletionChr913938001140040006599910
DeletionChr5139720011398900016999LOC_Os05g24410
DeletionChr71407000114108000379998
DeletionChr5141090011411700079993
DeletionChr61412300114179000559997
DeletionChr121413400114163000289993
DeletionChr11141370011424300010599918
DeletionChr61423000114258000279992
DeletionChr121423200114254000219995
DeletionChr41424200114257000149992
DeletionChr111427200114308000359995
DeletionChr61427500114338000629998
DeletionChr11431000114329000189994
DeletionChr71431300114337000239993
DeletionChr1143690011438300013999LOC_Os01g25450
DeletionChr214372001144190004699910
DeletionChr314394001144190002499910
DeletionChr121439700114437000399998
DeletionChr1144240011443700012999LOC_Os01g25710
DeletionChr61442500114447000219992
DeletionChr51442900114448000189994
DeletionChr71443800114453000149994
DeletionChr121444300114475000319994
DeletionChr31447800114501000229993
DeletionChr51448500114521000359997
DeletionChr121452500114565000399993
DeletionChr11457700114601000239996
DeletionChr71461200114625000129992
DeletionChr111463500114671000359997
DeletionChr71467100114708000369996
DeletionChr61470700114729000219994
DeletionChr51474400114771000269992
DeletionChr101478200114797000149992
DeletionChr61480400114853000489998
DeletionChr21482500114859000339992
DeletionChr414858156148581571LOC_Os04g25640
DeletionChr61488800114939000509997
DeletionChr21492200114937000149993
DeletionChr7149780011499900020999LOC_Os07g26160
DeletionChr21499100115014000229992
DeletionChr111501800115035000169992
DeletionChr21504700115064000169992
DeletionChr41505000115086000359995
DeletionChr51505100115078000269999
DeletionChr61509600115122000259994
DeletionChr515125001151940006899912
DeletionChr61514200115159000169992
DeletionChr111519600115210000139993
DeletionChr121523800115313000749999
DeletionChr51531600115354000379996
DeletionChr11532400115352000279995
DeletionChr121533100115379000479995
DeletionChr31534100115358000169993
DeletionChr11540700115426000189993
DeletionChr81544600115460000139992
DeletionChr51551000115538000279998
DeletionChr12155252891552529910LOC_Os12g26560
DeletionChr3155650011557800012999LOC_Os03g27560
DeletionChr121558100115633000519996
DeletionChr5155990011561300013999LOC_Os05g27130
DeletionChr111564100115700000589998
DeletionChr121572000115734000139993
DeletionChr71573000115755000249994
DeletionChr61574300115771000279994
DeletionChr111578400115811000269993
DeletionChr51578500115796000109992
DeletionChr71579900115824000249994
DeletionChr21583400115854000199992
DeletionChr121586100115893000319992
DeletionChr115922001159890006699912
DeletionChr2159280011594500016999LOC_Os02g27110
DeletionChr41593900115979000399994
DeletionChr121595000115973000229995
DeletionChr71596700116002000349995
DeletionChr81600300116026000229995
DeletionChr111601300116036000229995
DeletionChr41602700116072000449998
DeletionChr51605100116083000319996
DeletionChr61607800116098000199993
DeletionChr81608900116100000109992
DeletionChr121610000116144000439995
DeletionChr11611100116142000309996
DeletionChr41615000116174000239995
DeletionChr41620200116225000229992
DeletionChr31621700116235000179994
DeletionChr61630800116332000239992
DeletionChr21631000116336000259995
DeletionChr11635400116383000289995
DeletionChr11641100116425000139995
DeletionChr2164338201643385232LOC_Os02g27750
DeletionChr121645400116480000259994
DeletionChr11646200116473000109993
DeletionChr111646300116518000549997
DeletionChr11649000116514000239993
DeletionChr51651700116535000179993
DeletionChr12165230011653700013999LOC_Os12g28270
DeletionChr616530001166210009099911
DeletionChr101655800116574000159993
DeletionChr11659800116615000169992
DeletionChr3166110011662100099992
DeletionChr116636001167010006499911
DeletionChr31671300116725000119993
DeletionChr1116748001167580009999LOC_Os11g29190
DeletionChr101678800116802000139992
DeletionChr81682300116837000139995
DeletionChr21683600116854000179992
DeletionChr71684100116860000189993
DeletionChr61686400116879000149992
DeletionChr31689600116915000189992
DeletionChr11169210011693600014999LOC_Os11g29520
DeletionChr81692900116963000339994
DeletionChr716955631169556332
DeletionChr71699200117011000189993
DeletionChr61699300117006000129993
DeletionChr61703600117067000309994
DeletionChr21705800117079000209992
DeletionChr31706100117078000169993
DeletionChr11708900117109000199993
DeletionChr111712800117150000219995
DeletionChr31714400117172000279994
DeletionChr21715600117190000339995
DeletionChr1172050011721700011999LOC_Os01g31714
DeletionChr21721500117228000129993
DeletionChr61722100117236000149994
DeletionChr81722900117265000359995
DeletionChr71729200117315000229993
DeletionChr31731400117328000139993
DeletionChr61731500117336000209993
DeletionChr71734700117388000409995
DeletionChr21735600117382000259993
DeletionChr11736200117419000569998
DeletionChr41736500117422000569994
DeletionChr51740700117428000209992
DeletionChr101741400117456000419994
DeletionChr417437001175310009399911
DeletionChr81746100117477000159992
DeletionChr71754000117574000339992
DeletionChr41754800117563000149993
DeletionChr11755900117578000189995
DeletionChr81758900117610000209995
DeletionChr71769900117736000369995
DeletionChr81777600117809000329996
DeletionChr101786400117877000129992
DeletionChr31804000118084000439997
DeletionChr81810600118122000159993
DeletionChr121816100118189000279994
DeletionChr91822400118235000109992
DeletionChr11826800118283000149992
DeletionChr41828300118301000179993
DeletionChr118336001183880005199910
DeletionChr101845300118509000559998
DeletionChr71848100118506000249997
DeletionChr41856500118593000279992
DeletionChr71859300118610000169994
DeletionChr81864800118673000249993
DeletionChr418657001187080005099910
DeletionChr51866400118691000269994
DeletionChr9187190011873200012999
DeletionChr71881800118840000219993
DeletionChr81883700118864000269993
DeletionChr21885800118873000149995
DeletionChr3188770011889100013999LOC_Os03g33230
DeletionChr71889400118912000179994
DeletionChr11894800118971000229993
DeletionChr31900000119025000249993
DeletionChr7190080011902300014999LOC_Os07g31980
DeletionChr31902700119045000179995
DeletionChr81907200119114000419996
DeletionChr111909000119112000219994
DeletionChr21911000119126000159992
DeletionChr11913900119161000219993
DeletionChr3191790011919500015999LOC_Os03g33640
DeletionChr3192220011923400011999LOC_Os03g33828
DeletionChr1192630011927700013999LOC_Os01g34910
DeletionChr121926600119284000179992
DeletionChr51926900119300000309996
DeletionChr11928600119316000299993
DeletionChr111928900119303000139994
DeletionChr1219329001194170008799912
DeletionChr31933100119350000189996
DeletionChr21945500119468000129993
DeletionChr71951600119530000139993
DeletionChr21952700119566000389997
DeletionChr121954900119577000279994
DeletionChr121960800119620000119992
DeletionChr11962400119649000249994
DeletionChr31964800119664000159992
DeletionChr219671001196780006999
DeletionChr11970100119718000169994
DeletionChr11976700119801000339994
DeletionChr61979300119810000169993
DeletionChr61987300119895000219992
DeletionChr619930001200110008099917
DeletionChr32000200120019000169993
DeletionChr122004700120080000329996
DeletionChr320097423200974241LOC_Os03g36239
DeletionChr320103001201480004499910
DeletionChr120181202201812031
DeletionChr102029800120335000369994
DeletionChr32034400120370000259995
DeletionChr82037200120416000439997
DeletionChr32039200120408000159993
DeletionChr5204000012041200011999LOC_Os05g35160
DeletionChr112040400120420000159993
DeletionChr22041100120462000509999
DeletionChr12042100120434000129993
DeletionChr72045700120469000119992
DeletionChr12049400120576000819999
DeletionChr32069600120737000409995
DeletionChr52088200120893000109992
DeletionChr92091200120947000349996
DeletionChr1120913259209132612
DeletionChr8209280012094200013999LOC_Os08g33850
DeletionChr3209760012099300016999LOC_Os03g37900
DeletionChr62100400121024000199993
DeletionChr112100800121026000179994
DeletionChr32104700121062000149994
DeletionChr112108300121111000279994
DeletionChr1221113001211200006999
DeletionChr32112800121142000139993
DeletionChr42113500121149000139992
DeletionChr102113900121159000199992
DeletionChr12118400121201000169993
DeletionChr82119800121219000209996
DeletionChr22120000121219000189992
DeletionChr32123300121269000359998
DeletionChr1221247509212475112
DeletionChr82126000121296000359994
DeletionChr62126100121294000329994
DeletionChr11213510012136900017999LOC_Os11g36280
DeletionChr3214310012145200020999LOC_Os03g38710
DeletionChr32148400121531000469997
DeletionChr92149700121516000189992
DeletionChr92155300121573000199996
DeletionChr921648001216690002099911
DeletionChr92169200121705000129994
DeletionChr122173300121762000289993
DeletionChr122178300121842000589995
DeletionChr112180000121846000459995
DeletionChr5218030012190400010099916
DeletionChr92183500121850000149993
DeletionChr621857896218578971
DeletionChr122186100121924000629996
DeletionChr32192700121951000239995
DeletionChr72201700122044000269995
DeletionChr12220200012204000019999
DeletionChr3220290012204400014999LOC_Os03g40194
DeletionChr8220790012209700017999LOC_Os08g36500
DeletionChr22211500122140000249994
DeletionChr12214300122173000299995
DeletionChr62216900122188000189992
DeletionChr92225500122273000179996
DeletionChr22229700122339000419997
DeletionChr32235000122376000259996
DeletionChr122248700122507000199993
DeletionChr6225087342250880470
DeletionChr42256700122594000269992
DeletionChr32258200122596000139992
DeletionChr72268200122715000329996
DeletionChr122268800122719000309997
DeletionChr12270500122731000259993
DeletionChr32272300122755000319996
DeletionChr322813473228134785
DeletionChr52293300122950000169993
DeletionChr8229400012295500014999
DeletionChr22295400122977000229995
DeletionChr82305900123072000129994
DeletionChr32315300123167000139994
DeletionChr42315600123171000149994
DeletionChr12319800123216000179992
DeletionChr42320400123239000349995
DeletionChr12326300123274000109993
DeletionChr112327200123317000449998
DeletionChr82329900123313000139993
DeletionChr32330300123327000239993
DeletionChr122330800123327000189993
DeletionChr62331600123336000199994
DeletionChr52354600123561000149993
DeletionChr72363000123656000259994
DeletionChr12363200123646000139993
DeletionChr223645001237000005499910
DeletionChr12366900123693000239993
DeletionChr52370200123719000169993
DeletionChr82376300123794000309996
DeletionChr11237730952377313338LOC_Os11g39880
DeletionChr72381400123841000269996
DeletionChr62391800123940000219993
DeletionChr2239220012393800015999
DeletionChr32394800123964000159994
DeletionChr72396500123984000189993
DeletionChr82399100124003000119993
DeletionChr32408200124112000299999
DeletionChr42419200124216000239994
DeletionChr6244180012442900010999LOC_Os06g41150
DeletionChr122442600124452000259993
DeletionChr32448900124503000139992
DeletionChr52450400124517000129992
DeletionChr82450600124522000159993
DeletionChr32456000124579000189993
DeletionChr62464400124664000199992
DeletionChr112466200124694000319992
DeletionChr112472300124771000479999
DeletionChr2248460012486200015999LOC_Os02g41720
DeletionChr112491400124936000219993
DeletionChr524924001249840005999910
DeletionChr1250510012506100099992
DeletionChr225069001250780008999LOC_Os02g44320
DeletionChr4250850012509700011999LOC_Os04g43020
DeletionChr112540500125427000219994
DeletionChr62544200125489000469996
DeletionChr42545800125481000229994
DeletionChr82554200125565000229995
DeletionChr42558200125601000189995
DeletionChr112567000125697000269994
DeletionChr42570000125741000409998
DeletionChr825714001257810006699913
DeletionChr72583500125846000109992
DeletionChr42599700126014000169993
DeletionChr112606900126108000389996
DeletionChr426073001261090003599910
DeletionChr32615900126182000229992
DeletionChr12262420012626500022999
DeletionChr62632700126348000209993
DeletionChr52637200126396000239998
DeletionChr32639000126405000149993
DeletionChr72641900126452000329996
DeletionChr112643300126445000119992
DeletionChr82645400126479000249992
DeletionChr112661900126643000239996
DeletionChr726639001267340009499915
DeletionChr32665700126671000139992
DeletionChr4268060012681900012999LOC_Os04g46550
DeletionChr22680900126834000249994
DeletionChr52682300126861000379999
DeletionChr6270010012701000089992
DeletionChr6273050012731500099992
DeletionChr72730600127321000149993
DeletionChr12273110012731800069993
DeletionChr727372001274540008199913
DeletionChr82740000127432000319994
DeletionChr32766200127681000189993
DeletionChr62768100127699000179995
DeletionChr42769000127710000199995
DeletionChr52778100127801000199996
DeletionChr22788100127911000299995
DeletionChr12788400127899000149993
DeletionChr32797400127991000169995
DeletionChr32804300128060000169995
DeletionChr12807700128096000189994
DeletionChr42822200128259000369992
DeletionChr32822500128247000219995
DeletionChr32826500128281000159993
DeletionChr42837000128394000239994
DeletionChr72838700128408000209992
DeletionChr12853400128558000239997
DeletionChr72865300128675000219995
DeletionChr12870100128720000189994
DeletionChr42883400128853000189992
DeletionChr22891400128936000219996
DeletionChr22901500129037000219995
DeletionChr72909600129111000149992
DeletionChr52917000129194000239993
DeletionChr3292470012927200024999LOC_Os03g51550
DeletionChr22929800129317000189992
DeletionChr12940100129413000119992
DeletionChr42941200129437000249995
DeletionChr12944200129464000219994
DeletionChr32948900129511000219992
DeletionChr2297600012977400013999LOC_Os02g48990
DeletionChr12978400129800000159994
DeletionChr22995500129976000209993
DeletionChr630018549300185534LOC_Os06g49570
DeletionChr13002000130047000269998
DeletionChr43005700130079000219996
DeletionChr13006900130088000189994
DeletionChr43018000130224000439996
DeletionChr430363698303637002
DeletionChr33078500130802000169993
DeletionChr23079100130808000169994
DeletionChr63084000130865000249994
DeletionChr23094100130968000269994
DeletionChr33095500130968000129994
DeletionChr13118700131244000569998
DeletionChr23146500131477000119993
DeletionChr43178300131806000229993
DeletionChr13206300132091000279996
DeletionChr33221800132232000139993
DeletionChr13222500132249000239996
DeletionChr23237600132390000139994
DeletionChr432415973324159741
DeletionChr23246000132478000179995
DeletionChr13246500132513000479996
DeletionChr432470009324700101
DeletionChr23250100132519000179992
DeletionChr13257800132598000199994
DeletionChr1326280013265000021999LOC_Os01g56870
DeletionChr43272800132743000149994
DeletionChr13284500132880000349994
DeletionChr43297300132984000109992
DeletionChr23301800133044000259994
DeletionChr23310500133126000209993
DeletionChr13328800133309000209993
DeletionChr23381500133826000109994
DeletionChr33389000133905000149994
DeletionChr13390100133916000149994
DeletionChr433981001340360005499912
DeletionChr33436200134384000219995
DeletionChr33449000134534000439999
DeletionChr43461600134629000129992
DeletionChr33467800134702000239994
DeletionChr13497300134991000179993
DeletionChr3353289503532904292
DeletionChr13561900135645000259992
DeletionChr13590200135924000219995
DeletionChr33604600136063000169992
DeletionChr13626800136284000159993
DeletionChr13660500136621000159993
DeletionChr13674600136783000369995
DeletionChr13711100137139000279994
DeletionChr13805500138072000169992
DeletionChr1403410014036700025999LOC_Os01g69850
DeletionChr14106200141074000119993
DeletionChr14197900141996000169993
DeletionChr1420880014210900020999LOC_Os01g72570
DeletionChr14220800142226000179992
DeletionChr14226500142278000129993

Insertions: 13
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr810302305103023084
InsertionChr115750005157500051
InsertionChr119526477195264771
InsertionChr220566809205668102
InsertionChr617037014170370141
InsertionChr621857133218571331
InsertionChr7966716796671671
InsertionChr726578056265780561
InsertionChr9279017327901731
InsertionChr1122777172227771732
InsertionChr127533907533901
InsertionChr127533947533941
InsertionChr1223189364231893641

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr111025794410566733
InversionChr111025795910658723LOC_Os11g18780
InversionChr121335525613395518
InversionChr61452217814901827

Translocations: 23
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr81840443Chr330508218
TranslocationChr123253666Chr8174925122
TranslocationChr84306956Chr625086803
TranslocationChr116257316Chr627345984
TranslocationChr97178168Chr139124942
TranslocationChr78139843Chr328718061
TranslocationChr128402035Chr613377163
TranslocationChr119031542Chr723098305
TranslocationChr69352429Chr211966171
TranslocationChr1211561156Chr229427397
TranslocationChr711611713Chr58422024
TranslocationChr412290072Chr334340975LOC_Os03g60380
TranslocationChr1213408963Chr124842225
TranslocationChr1213410191Chr412546166LOC_Os04g22130
TranslocationChr813684513Chr4102130722
TranslocationChr613715301Chr118683563
TranslocationChr815295524Chr616332387
TranslocationChr919123707Chr728591519LOC_Os09g32040
TranslocationChr919123719Chr7285904572
TranslocationChr1119300785Chr423930569
TranslocationChr1124623041Chr89667642
TranslocationChr1227102488Chr41112365LOC_Os04g02850
TranslocationChr728636084Chr23868966