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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19171498	T-C	HOMO	INTERGENIC
SBS	Chr1	21673211	C-A	HOMO	INTERGENIC
SBS	Chr1	24563964	A-G	HET	INTRON
SBS	Chr1	30467802	G-A	HET	INTERGENIC
SBS	Chr1	31311517	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g54420
SBS	Chr1	37051310	C-T	HET	INTERGENIC
SBS	Chr10	17461092	A-G	HET	INTERGENIC
SBS	Chr10	17619515	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33460
SBS	Chr10	17619526	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33460
SBS	Chr11	16654678	A-G	HET	INTERGENIC
SBS	Chr11	25383038	G-A	HOMO	INTRON
SBS	Chr12	14915973	G-A	HET	INTRON
SBS	Chr2	17151179	G-T	HET	SYNONYMOUS_CODING
SBS	Chr2	20282309	T-A	HET	INTERGENIC
SBS	Chr2	5808896	C-A	HET	INTERGENIC
SBS	Chr3	29962688	G-A	HET	INTRON
SBS	Chr3	337641	A-T	HOMO	INTRON
SBS	Chr3	34345407	C-T	HET	INTRON
SBS	Chr4	1214492	G-A	HET	INTRON
SBS	Chr4	25587586	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g43250
SBS	Chr4	27821386	A-C	HET	INTRON
SBS	Chr4	32523044	C-T	HET	INTERGENIC
SBS	Chr5	16655202	T-C	HOMO	INTERGENIC
SBS	Chr5	17434756	A-G	HOMO	INTERGENIC
SBS	Chr6	17273608	C-T	HET	INTRON
SBS	Chr6	17534062	C-T	HET	INTERGENIC
SBS	Chr6	20462834	A-T	HET	INTERGENIC
SBS	Chr6	6168588	T-A	HET	INTERGENIC
SBS	Chr7	20515939	G-A	HOMO	INTERGENIC
SBS	Chr8	28390844	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g45210
SBS	Chr9	1567425	T-G	HET	INTERGENIC
SBS	Chr9	8046391	A-C	HOMO	INTRON

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	885040	885074	34
Deletion	Chr1	1259504	1259923	419
Deletion	Chr4	2627645	2627646	1
Deletion	Chr6	4304251	4304259	8
Deletion	Chr4	4853057	4853143	86
Deletion	Chr7	7281586	7281647	61
Deletion	Chr4	8158805	8158806	1
Deletion	Chr11	8689441	8689533	92
Deletion	Chr10	8748930	8748931	1	LOC_Os10g17360
Deletion	Chr6	9599772	9599773	1
Deletion	Chr10	9660742	9660746	4
Deletion	Chr2	10331673	10331685	12
Deletion	Chr4	11945405	11945406	1
Deletion	Chr7	12154985	12154986	1
Deletion	Chr11	12533012	12533013	1
Deletion	Chr7	14189955	14189956	1
Deletion	Chr10	14797291	14797302	11
Deletion	Chr8	14820167	14820232	65	LOC_Os08g24540
Deletion	Chr5	15242374	15242375	1
Deletion	Chr8	17964425	17964451	26
Deletion	Chr4	18479384	18479385	1
Deletion	Chr11	20263500	20263506	6
Deletion	Chr5	21626190	21626191	1
Deletion	Chr7	23404504	23404505	1
Deletion	Chr11	25063526	25063576	50
Deletion	Chr12	26542753	26542754	1
Deletion	Chr8	27143959	27143961	2
Deletion	Chr5	28982946	28982948	2
Deletion	Chr2	30240549	30240550	1
Deletion	Chr1	31954509	31954512	3

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11844458	11844458	1
Insertion	Chr10	5412334	5412334	1
Insertion	Chr11	26147165	26147165	1
Insertion	Chr12	14518922	14518922	1
Insertion	Chr2	17551991	17551991	1
Insertion	Chr4	15266164	15266164	1
Insertion	Chr4	32912475	32912475	1
Insertion	Chr5	10007414	10007414	1
Insertion	Chr8	24138366	24138366	1	LOC_Os08g38100
Insertion	Chr8	6843935	6843935	1
Insertion	Chr9	5748486	5748486	1

No Inversion

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3655572	Chr1	35235637
Translocation	Chr8	6761169	Chr5	8422521
Translocation	Chr8	8561243	Chr1	14847279	LOC_Os08g14290
Translocation	Chr5	8695387	Chr4	20317846	LOC_Os05g15360
Translocation	Chr9	9371551	Chr7	4204682
Translocation	Chr9	11379209	Chr6	7774338
Translocation	Chr11	13397516	Chr2	2470221
Translocation	Chr10	22550420	Chr1	2473716
Translocation	Chr11	26960166	Chr5	27709523	LOC_Os11g44590
Translocation	Chr4	33803295	Chr1	34719682

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