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Mutant Information

Mutant Name	FN3132-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3132-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10360688	A-G	HOMO	INTERGENIC
SBS	Chr1	2527332	C-T	HET	INTERGENIC
SBS	Chr1	3438530	A-G	HET	INTERGENIC
SBS	Chr1	43213370	G-T	HOMO	INTRON
SBS	Chr10	12407415	C-T	HOMO	INTERGENIC
SBS	Chr10	14420073	A-C	HOMO	INTERGENIC
SBS	Chr10	15893826	A-G	HOMO	UTR_3_PRIME
SBS	Chr10	17196175	C-T	HET	INTERGENIC
SBS	Chr10	2923535	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05790
SBS	Chr10	692051	C-A	HET	INTRON
SBS	Chr11	11179822	G-A	HOMO	INTERGENIC
SBS	Chr11	503407	A-C	HET	INTERGENIC
SBS	Chr11	636343	G-A	HET	INTERGENIC
SBS	Chr12	2882360	T-G	HOMO	INTERGENIC
SBS	Chr2	25311755	G-A	HOMO	INTERGENIC
SBS	Chr2	26392004	C-T	HOMO	INTERGENIC
SBS	Chr2	28264979	G-A	HET	INTERGENIC
SBS	Chr2	9762694	G-A	HET	INTERGENIC
SBS	Chr3	29779159	A-G	HOMO	INTERGENIC
SBS	Chr3	4470467	A-G	HET	INTERGENIC
SBS	Chr3	7100797	T-A	HET	INTRON
SBS	Chr3	8489585	G-A	HOMO	INTERGENIC
SBS	Chr4	18989030	C-A	HOMO	INTRON
SBS	Chr4	22286402	C-T	HOMO	INTERGENIC
SBS	Chr4	26216887	C-T	HET	INTERGENIC
SBS	Chr4	26928713	G-A	HET	INTERGENIC
SBS	Chr4	33593427	T-G	HOMO	INTERGENIC
SBS	Chr4	9445501	C-T	HOMO	INTERGENIC
SBS	Chr5	13475397	T-A	HET	INTERGENIC
SBS	Chr5	13475398	C-T	HET	INTERGENIC
SBS	Chr5	27992134	A-G	HET	INTERGENIC
SBS	Chr5	7193104	G-A	HET	INTRON
SBS	Chr5	7940170	A-G	HET	INTERGENIC
SBS	Chr6	12656488	C-G	HET	INTRON
SBS	Chr6	23066967	G-A	HET	INTRON
SBS	Chr7	16126345	A-G	HET	INTERGENIC
SBS	Chr7	18226425	G-A	HET	INTRON
SBS	Chr7	19309344	A-T	HET	UTR_3_PRIME
SBS	Chr7	8921462	A-C	HOMO	INTERGENIC
SBS	Chr7	9890367	C-T	HET	INTERGENIC
SBS	Chr8	14169693	A-T	HOMO	INTRON
SBS	Chr8	1894288	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	27733481	G-A	HET	UTR_3_PRIME
SBS	Chr8	4068135	T-A	HET	INTRON
SBS	Chr8	7021900	C-A	HET	INTERGENIC
SBS	Chr9	13874133	G-A	HET	INTERGENIC
SBS	Chr9	14077814	T-G	HET	INTERGENIC
SBS	Chr9	4789703	C-T	HET	SYNONYMOUS_CODING

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1207891	1207896	5
Deletion	Chr12	3246954	3246963	9
Deletion	Chr6	5006634	5006641	7
Deletion	Chr2	5348110	5348112	2
Deletion	Chr7	5829124	5829125	1
Deletion	Chr3	6214489	6214491	2
Deletion	Chr5	7658697	7658703	6
Deletion	Chr3	9177569	9177570	1
Deletion	Chr4	11039949	11039963	14	LOC_Os04g19760
Deletion	Chr12	11290147	11290154	7
Deletion	Chr5	13220001	13464000	243999	36
Deletion	Chr7	13363615	13363616	1
Deletion	Chr5	13892651	13892656	5
Deletion	Chr10	14421597	14421611	14
Deletion	Chr7	14622473	14622474	1
Deletion	Chr2	16066376	16066378	2
Deletion	Chr7	16886672	16886673	1
Deletion	Chr9	17919458	17919464	6
Deletion	Chr8	18315316	18315317	1
Deletion	Chr12	20762965	20762966	1
Deletion	Chr6	20809362	20809364	2	LOC_Os06g35650
Deletion	Chr11	21364706	21364712	6
Deletion	Chr6	24442161	24442162	1
Deletion	Chr2	25920001	25975000	54999	9
Deletion	Chr2	35408079	35408089	10

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20797926	20797927	2	LOC_Os01g37240
Insertion	Chr2	13374696	13374696	1
Insertion	Chr2	360680	360680	1
Insertion	Chr5	12748341	12748369	29
Insertion	Chr5	346092	346093	2
Insertion	Chr6	9003437	9003490	54
Insertion	Chr9	13250037	13250042	6
Insertion	Chr9	1383674	1383674	1	LOC_Os09g02950

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23312769	23564908
Inversion	Chr7	23312781	23564909

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	1001714	Chr2	15292875
Translocation	Chr7	1188610	Chr4	18475332
Translocation	Chr7	5440325	Chr6	7372684
Translocation	Chr12	8348298	Chr10	15364393

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