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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12594402	G-C	HET	SYNONYMOUS_CODING
SBS	Chr11	21572406	T-C	HET	INTERGENIC
SBS	Chr11	9624967	T-A	HET	INTRON
SBS	Chr12	13563359	G-A	HOMO	INTERGENIC
SBS	Chr12	13563363	G-A	HOMO	INTERGENIC
SBS	Chr12	13563367	T-A	HOMO	INTERGENIC
SBS	Chr12	15396107	G-T	HET	INTERGENIC
SBS	Chr12	26242690	C-A	HET	INTERGENIC
SBS	Chr12	26985460	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	3262814	C-T	HOMO	INTERGENIC
SBS	Chr12	9790711	A-C	HET	INTERGENIC
SBS	Chr2	17691419	C-G	HOMO	INTRON
SBS	Chr2	18373464	C-T	HOMO	INTERGENIC
SBS	Chr3	10543935	T-A	HET	INTRON
SBS	Chr3	10543936	C-A	HET	INTRON
SBS	Chr3	33059227	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g58060
SBS	Chr4	1896600	C-A	HET	INTERGENIC
SBS	Chr4	6243780	A-G	HET	INTERGENIC
SBS	Chr5	10083649	C-A	HET	INTERGENIC
SBS	Chr5	7164129	A-G	HET	UTR_3_PRIME
SBS	Chr6	12543041	C-T	HET	INTRON
SBS	Chr6	26024059	A-T	HET	INTRON
SBS	Chr6	7398168	A-G	HET	INTERGENIC
SBS	Chr7	18872348	A-T	HOMO	INTERGENIC
SBS	Chr7	23290897	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38820
SBS	Chr8	20929493	T-C	HET	INTERGENIC
SBS	Chr8	3780296	G-A	HOMO	INTERGENIC
SBS	Chr8	7893821	G-C	HOMO	UTR_3_PRIME
SBS	Chr9	15309605	T-C	HOMO	INTRON
SBS	Chr9	16421330	C-A	HET	INTERGENIC
SBS	Chr9	19867390	C-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2449308	2449334	26
Deletion	Chr12	2792546	2792547	1
Deletion	Chr7	4570015	4570016	1
Deletion	Chr8	4793562	4793563	1
Deletion	Chr7	5987335	5987346	11
Deletion	Chr7	7492773	7492796	23
Deletion	Chr8	8739977	8739978	1
Deletion	Chr12	9719739	9719768	29	LOC_Os12g16970
Deletion	Chr12	13675150	13675151	1
Deletion	Chr12	13726513	13726514	1
Deletion	Chr9	14188837	14188838	1	LOC_Os09g23810
Deletion	Chr4	14599392	14599393	1
Deletion	Chr8	16705185	16705186	1
Deletion	Chr11	18081494	18081495	1
Deletion	Chr7	20316728	20316750	22
Deletion	Chr11	22108205	22108207	2
Deletion	Chr5	24205051	24205061	10
Deletion	Chr12	24547203	24547204	1
Deletion	Chr5	27409864	27409869	5
Deletion	Chr2	28494364	28494437	73
Deletion	Chr4	29347256	29347257	1
Deletion	Chr4	29710723	29710724	1
Deletion	Chr3	35510392	35510395	3

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23145025	23145025	1
Insertion	Chr10	2038423	2038423	1
Insertion	Chr10	4962632	4962643	12
Insertion	Chr5	21167599	21167599	1
Insertion	Chr5	25869146	25869146	1
Insertion	Chr5	8194568	8194568	1
Insertion	Chr6	4290180	4290180	1
Insertion	Chr8	26700460	26700460	1
Insertion	Chr8	6938082	6938083	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14186359	14360711
Inversion	Chr6	14186364	14360719

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr6	633974	Chr5	25587829
Translocation	Chr7	4538627	Chr3	19557666
Translocation	Chr7	4539876	Chr3	19562475
Translocation	Chr8	10913923	Chr5	9160325
Translocation	Chr9	11292416	Chr4	27474044
Translocation	Chr10	12627915	Chr3	20025980
Translocation	Chr7	13460055	Chr4	18033014
Translocation	Chr12	17844585	Chr8	11127999
Translocation	Chr8	18695990	Chr4	405567
Translocation	Chr12	22023465	Chr8	27373381
Translocation	Chr9	22299752	Chr4	3249327
Translocation	Chr3	25799421	Chr1	34369740

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