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Mutant Information |
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Mutant Name | FN3135-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3135-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 47
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 11177484 | A-C | HET | INTRON | |
SBS | Chr1 | 28356261 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 29814868 | T-C | HOMO | INTERGENIC | |
SBS | Chr1 | 34514306 | G-A | HET | INTRON | |
SBS | Chr1 | 35133415 | A-G | HET | INTRON | |
SBS | Chr1 | 41396385 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 7974337 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g14220 |
SBS | Chr10 | 21292186 | A-G | HET | INTERGENIC | |
SBS | Chr10 | 8377240 | C-G | HOMO | INTRON | |
SBS | Chr11 | 1412943 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g03640 |
SBS | Chr11 | 15041502 | A-G | HET | INTERGENIC | |
SBS | Chr11 | 21229349 | A-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr11 | 3017837 | C-G | HOMO | INTERGENIC | |
SBS | Chr11 | 5729896 | G-A | HET | INTRON | |
SBS | Chr12 | 5362248 | A-T | HET | INTERGENIC | |
SBS | Chr12 | 8036992 | G-A | HET | INTERGENIC | |
SBS | Chr12 | 9941469 | C-T | HET | INTRON | |
SBS | Chr2 | 17782643 | G-T | HET | INTRON | |
SBS | Chr2 | 26059812 | G-A | HET | INTRON | |
SBS | Chr2 | 32444736 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 3322595 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 3322596 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 1708255 | C-T | HET | UTR_3_PRIME | |
SBS | Chr3 | 18699629 | G-C | HOMO | INTERGENIC | |
SBS | Chr3 | 2219091 | G-A | HET | INTRON | |
SBS | Chr3 | 23329281 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g41990 |
SBS | Chr3 | 23329282 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g41990 |
SBS | Chr3 | 23905928 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 28984926 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 11101440 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g19910 |
SBS | Chr4 | 22001786 | G-T | HET | INTERGENIC | |
SBS | Chr4 | 24428796 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 10941960 | T-C | HET | INTERGENIC | |
SBS | Chr5 | 14301024 | A-C | HET | SPLICE_SITE_REGION | |
SBS | Chr5 | 15306126 | C-A | HET | SPLICE_SITE_REGION | |
SBS | Chr5 | 27089445 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 3252867 | A-G | HET | INTRON | |
SBS | Chr6 | 14407681 | G-A | HET | INTRON | |
SBS | Chr6 | 22218954 | C-A | HET | INTERGENIC | |
SBS | Chr6 | 22218955 | T-A | HET | INTERGENIC | |
SBS | Chr6 | 24086522 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 24311091 | C-G | HET | INTERGENIC | |
SBS | Chr6 | 28170942 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 3790932 | C-A | HET | INTERGENIC | |
SBS | Chr7 | 28680618 | A-T | HOMO | INTERGENIC | |
SBS | Chr8 | 744329 | G-A | HET | INTRON | |
SBS | Chr9 | 4237063 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g08180 |
Deletions: 34
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 139163 | 139173 | 10 | |
Deletion | Chr4 | 566557 | 566558 | 1 | LOC_Os04g01900 |
Deletion | Chr2 | 2359559 | 2359560 | 1 | |
Deletion | Chr4 | 2657832 | 2657868 | 36 | LOC_Os04g05340 |
Deletion | Chr5 | 3720001 | 3744000 | 23999 | 3 |
Deletion | Chr5 | 3749001 | 3792000 | 42999 | 5 |
Deletion | Chr3 | 4932893 | 4932894 | 1 | |
Deletion | Chr6 | 5489249 | 5489252 | 3 | |
Deletion | Chr1 | 6167515 | 6167521 | 6 | |
Deletion | Chr10 | 7264602 | 7264612 | 10 | |
Deletion | Chr10 | 7671058 | 7671061 | 3 | |
Deletion | Chr6 | 9304704 | 9304708 | 4 | |
Deletion | Chr6 | 9538138 | 9538146 | 8 | |
Deletion | Chr1 | 11333649 | 11333652 | 3 | LOC_Os01g19960 |
Deletion | Chr1 | 11333937 | 11333939 | 2 | |
Deletion | Chr6 | 11795824 | 11795827 | 3 | LOC_Os06g20530 |
Deletion | Chr7 | 13127262 | 13127263 | 1 | |
Deletion | Chr8 | 13336429 | 13336430 | 1 | |
Deletion | Chr3 | 13817225 | 13817226 | 1 | LOC_Os03g24270 |
Deletion | Chr4 | 17226888 | 17226897 | 9 | |
Deletion | Chr1 | 20693277 | 20693301 | 24 | LOC_Os01g37080 |
Deletion | Chr3 | 20923362 | 20923363 | 1 | |
Deletion | Chr3 | 21028257 | 21028267 | 10 | |
Deletion | Chr11 | 21229322 | 21229323 | 1 | |
Deletion | Chr3 | 23329001 | 23407000 | 77999 | 8 |
Deletion | Chr3 | 23393302 | 23393303 | 1 | |
Deletion | Chr8 | 24221303 | 24221320 | 17 | |
Deletion | Chr8 | 24362837 | 24362847 | 10 | |
Deletion | Chr8 | 25036039 | 25036047 | 8 | LOC_Os08g39570 |
Deletion | Chr11 | 26698918 | 26698919 | 1 | |
Deletion | Chr11 | 27707151 | 27707152 | 1 | LOC_Os11g45790 |
Deletion | Chr2 | 31628130 | 31628133 | 3 | |
Deletion | Chr3 | 32661047 | 32661063 | 16 | |
Deletion | Chr4 | 32872059 | 32872064 | 5 | LOC_Os04g55300 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 11626559 | 11626559 | 1 | |
Insertion | Chr12 | 9856110 | 9856110 | 1 | |
Insertion | Chr3 | 34214120 | 34214121 | 2 | |
Insertion | Chr6 | 16927413 | 16927413 | 1 | LOC_Os06g29540![]() |
No Inversion
Translocations: 14
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr6 | 634833 | Chr2 | 17757429 | LOC_Os06g02130 |
Translocation | Chr11 | 1814570 | Chr5 | 2083393 | |
Translocation | Chr8 | 4172132 | Chr6 | 24569078 | |
Translocation | Chr4 | 7871807 | Chr2 | 34491837 | |
Translocation | Chr8 | 9895352 | Chr7 | 18139935 | LOC_Os07g30650 |
Translocation | Chr9 | 11111373 | Chr3 | 23330135 | LOC_Os03g41990 |
Translocation | Chr9 | 11111500 | Chr3 | 23404452 | |
Translocation | Chr12 | 11388048 | Chr7 | 1638446 | LOC_Os07g03910 |
Translocation | Chr10 | 15253217 | Chr5 | 14410538 | |
Translocation | Chr10 | 15253459 | Chr9 | 11335718 | LOC_Os09g18490 |
Translocation | Chr10 | 15253466 | Chr9 | 11111503 | |
Translocation | Chr12 | 15321139 | Chr11 | 16186543 | |
Translocation | Chr10 | 18184005 | Chr9 | 16564128 | |
Translocation | Chr12 | 18942606 | Chr10 | 15253635 |