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Mutant Information

Mutant NameFN3135-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3135-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 47
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr111177484A-CHETINTRON
SBSChr128356261G-AHETINTERGENIC
SBSChr129814868T-CHOMOINTERGENIC
SBSChr134514306G-AHETINTRON
SBSChr135133415A-GHETINTRON
SBSChr141396385A-GHETINTERGENIC
SBSChr17974337T-CHETNON_SYNONYMOUS_CODINGLOC_Os01g14220
SBSChr1021292186A-GHETINTERGENIC
SBSChr108377240C-GHOMOINTRON
SBSChr111412943A-THOMONON_SYNONYMOUS_CODINGLOC_Os11g03640
SBSChr1115041502A-GHETINTERGENIC
SBSChr1121229349A-THOMOSYNONYMOUS_CODING
SBSChr113017837C-GHOMOINTERGENIC
SBSChr115729896G-AHETINTRON
SBSChr125362248A-THETINTERGENIC
SBSChr128036992G-AHETINTERGENIC
SBSChr129941469C-THETINTRON
SBSChr217782643G-THETINTRON
SBSChr226059812G-AHETINTRON
SBSChr232444736C-THOMOINTERGENIC
SBSChr23322595T-CHETINTERGENIC
SBSChr23322596C-THETINTERGENIC
SBSChr31708255C-THETUTR_3_PRIME
SBSChr318699629G-CHOMOINTERGENIC
SBSChr32219091G-AHETINTRON
SBSChr323329281G-AHETNON_SYNONYMOUS_CODINGLOC_Os03g41990
SBSChr323329282C-THETNON_SYNONYMOUS_CODINGLOC_Os03g41990
SBSChr323905928G-AHETINTERGENIC
SBSChr328984926A-GHETINTERGENIC
SBSChr411101440C-THOMONON_SYNONYMOUS_CODINGLOC_Os04g19910
SBSChr422001786G-THETINTERGENIC
SBSChr424428796G-AHETINTERGENIC
SBSChr510941960T-CHETINTERGENIC
SBSChr514301024A-CHETSPLICE_SITE_REGION
SBSChr515306126C-AHETSPLICE_SITE_REGION
SBSChr527089445C-THETINTERGENIC
SBSChr53252867A-GHETINTRON
SBSChr614407681G-AHETINTRON
SBSChr622218954C-AHETINTERGENIC
SBSChr622218955T-AHETINTERGENIC
SBSChr624086522G-AHETINTERGENIC
SBSChr624311091C-GHETINTERGENIC
SBSChr628170942A-GHETINTERGENIC
SBSChr63790932C-AHETINTERGENIC
SBSChr728680618A-THOMOINTERGENIC
SBSChr8744329G-AHETINTRON
SBSChr94237063G-AHETNON_SYNONYMOUS_CODINGLOC_Os09g08180

Deletions: 34
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr213916313917310
DeletionChr45665575665581LOC_Os04g01900
DeletionChr2235955923595601
DeletionChr42657832265786836LOC_Os04g05340
DeletionChr537200013744000239993
DeletionChr537490013792000429995
DeletionChr3493289349328941
DeletionChr6548924954892523
DeletionChr1616751561675216
DeletionChr107264602726461210
DeletionChr10767105876710613
DeletionChr6930470493047084
DeletionChr6953813895381468
DeletionChr111333649113336523LOC_Os01g19960
DeletionChr111333937113339392
DeletionChr611795824117958273LOC_Os06g20530
DeletionChr713127262131272631
DeletionChr813336429133364301
DeletionChr313817225138172261LOC_Os03g24270
DeletionChr417226888172268979
DeletionChr1206932772069330124LOC_Os01g37080
DeletionChr320923362209233631
DeletionChr3210282572102826710
DeletionChr1121229322212293231
DeletionChr32332900123407000779998
DeletionChr323393302233933031
DeletionChr8242213032422132017
DeletionChr8243628372436284710
DeletionChr825036039250360478LOC_Os08g39570
DeletionChr1126698918266989191
DeletionChr1127707151277071521LOC_Os11g45790
DeletionChr231628130316281333
DeletionChr3326610473266106316
DeletionChr432872059328720645LOC_Os04g55300

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1211626559116265591
InsertionChr12985611098561101
InsertionChr334214120342141212
InsertionChr616927413169274131LOC_Os06g29540image

No Inversion

Translocations: 14
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr6634833Chr217757429LOC_Os06g02130
TranslocationChr111814570Chr52083393
TranslocationChr84172132Chr624569078
TranslocationChr47871807Chr234491837
TranslocationChr89895352Chr718139935LOC_Os07g30650
TranslocationChr911111373Chr323330135LOC_Os03g41990
TranslocationChr911111500Chr323404452
TranslocationChr1211388048Chr71638446LOC_Os07g03910
TranslocationChr1015253217Chr514410538
TranslocationChr1015253459Chr911335718LOC_Os09g18490
TranslocationChr1015253466Chr911111503
TranslocationChr1215321139Chr1116186543
TranslocationChr1018184005Chr916564128
TranslocationChr1218942606Chr1015253635