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Mutant Information

Mutant Name	FN3142-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3142-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13733220	G-A	HET	INTERGENIC
SBS	Chr1	16279541	T-C	HOMO	INTERGENIC
SBS	Chr1	33068416	A-G	HET	INTERGENIC
SBS	Chr1	7629086	C-T	HET	INTERGENIC
SBS	Chr10	13465883	A-T	HET	INTERGENIC
SBS	Chr10	6651082	G-A	HET	INTERGENIC
SBS	Chr10	9442503	G-A	HET	INTERGENIC
SBS	Chr11	16491822	T-A	HET	INTERGENIC
SBS	Chr11	16608607	A-C	HOMO	INTERGENIC
SBS	Chr12	13667914	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr12	23018245	G-T	HET	INTERGENIC
SBS	Chr12	3969536	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g07840
SBS	Chr12	8569554	G-A	HET	INTRON
SBS	Chr2	1381721	A-C	HET	SPLICE_SITE_REGION
SBS	Chr2	18324830	G-A	HOMO	START_LOST	LOC_Os02g30750
SBS	Chr2	30042744	C-T	HET	INTERGENIC
SBS	Chr2	4760785	G-C	HET	INTERGENIC
SBS	Chr3	6025843	G-C	HET	INTERGENIC
SBS	Chr4	14540639	T-C	HET	INTERGENIC
SBS	Chr4	15294663	G-T	HET	INTERGENIC
SBS	Chr4	15294894	A-C	HET	INTERGENIC
SBS	Chr4	15946949	T-C	HET	INTRON
SBS	Chr4	17272864	T-C	HET	INTERGENIC
SBS	Chr4	33008963	A-G	HET	INTRON
SBS	Chr4	5700871	G-C	HET	INTERGENIC
SBS	Chr5	17475322	A-T	HOMO	INTERGENIC
SBS	Chr5	23854042	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40680
SBS	Chr6	13233905	C-T	HET	INTERGENIC
SBS	Chr6	13233906	A-C	HET	INTERGENIC
SBS	Chr6	13233911	C-T	HET	INTERGENIC
SBS	Chr6	17050255	A-C	HET	INTERGENIC
SBS	Chr6	30632948	G-A	HET	INTERGENIC
SBS	Chr6	30632949	G-A	HET	INTERGENIC
SBS	Chr7	19038416	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32010
SBS	Chr7	2305201	G-A	HET	INTERGENIC
SBS	Chr7	5167436	C-A	HET	INTERGENIC
SBS	Chr7	5829004	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g10740
SBS	Chr7	7205373	C-T	HET	INTERGENIC
SBS	Chr7	9544270	C-T	HET	INTERGENIC
SBS	Chr7	9544271	C-T	HET	INTERGENIC
SBS	Chr8	16018975	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g26280
SBS	Chr9	13357949	G-A	HET	INTERGENIC
SBS	Chr9	17675659	G-T	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	580001	710000	129999	25
Deletion	Chr5	1508747	1508748	1
Deletion	Chr4	3325195	3325207	12
Deletion	Chr9	3882147	3882148	1
Deletion	Chr7	4531044	4531048	4
Deletion	Chr4	4850244	4850267	23
Deletion	Chr12	5197001	5293000	95999	16
Deletion	Chr11	5331010	5331019	9
Deletion	Chr7	6412755	6412766	11
Deletion	Chr8	7854022	7854023	1
Deletion	Chr11	8180483	8180487	4
Deletion	Chr9	8621564	8621566	2
Deletion	Chr6	9295863	9295875	12	LOC_Os06g16310
Deletion	Chr12	10956077	10956094	17
Deletion	Chr4	11441474	11441516	42
Deletion	Chr9	12994086	12994091	5
Deletion	Chr4	13163610	13163612	2
Deletion	Chr8	14560175	14560235	60
Deletion	Chr12	16750297	16750298	1
Deletion	Chr2	24542078	24542079	1
Deletion	Chr6	26052825	26052827	2	LOC_Os06g43340
Deletion	Chr3	33451374	33451375	1
Deletion	Chr1	35286794	35286802	8
Deletion	Chr1	36043972	36043975	3

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1213458	1213463	6
Insertion	Chr1	30178145	30178156	12
Insertion	Chr10	17922537	17922538	2
Insertion	Chr11	18372525	18372572	48
Insertion	Chr12	13522740	13522746	7
Insertion	Chr12	5275877	5275877	1
Insertion	Chr2	34048036	34048041	6
Insertion	Chr3	4963721	4963724	4
Insertion	Chr4	19161913	19161922	10
Insertion	Chr4	24591265	24591265	1
Insertion	Chr6	26628737	26628737	1
Insertion	Chr7	1345208	1345216	9
Insertion	Chr7	29628361	29628372	12
Insertion	Chr9	12703076	12703077	2
Insertion	Chr9	14334102	14334102	1
Insertion	Chr9	4919476	4919476	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11736055	12167309
Inversion	Chr3	23662304	23789663	LOC_Os03g42730

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4089015	Chr7	28750046
Translocation	Chr12	13690092	Chr6	13664716	LOC_Os06g23400
Translocation	Chr12	13690437	Chr6	13664719	LOC_Os06g23400
Translocation	Chr8	22804004	Chr3	5888256

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