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Mutant Information

Mutant Name	FN3145-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3145-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 54

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32130880	T-A	HET	INTRON
SBS	Chr1	32130881	C-T	HET	INTRON
SBS	Chr1	39812491	C-T	HET	INTRON
SBS	Chr10	13397231	C-A	HET	INTRON
SBS	Chr11	11009084	G-A	HET	INTERGENIC
SBS	Chr11	13468555	G-A	HET	INTERGENIC
SBS	Chr11	15422684	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26850
SBS	Chr11	15567450	G-T	HET	INTERGENIC
SBS	Chr11	16096578	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28000
SBS	Chr11	18691573	G-C	HET	INTRON
SBS	Chr11	24776877	G-A	HET	INTERGENIC
SBS	Chr12	1181824	C-T	HET	INTERGENIC
SBS	Chr12	14305335	C-T	HET	INTERGENIC
SBS	Chr12	17797590	C-T	HET	INTERGENIC
SBS	Chr12	17797595	A-T	HET	INTERGENIC
SBS	Chr12	4550555	G-A	HET	INTERGENIC
SBS	Chr2	27589543	A-G	HET	INTERGENIC
SBS	Chr2	32185943	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	8709225	C-T	HET	INTERGENIC
SBS	Chr3	16247530	A-G	HET	INTERGENIC
SBS	Chr3	17921864	G-A	HOMO	INTERGENIC
SBS	Chr3	2251712	T-C	HOMO	INTERGENIC
SBS	Chr3	35224924	G-T	HET	INTERGENIC
SBS	Chr3	35224925	C-T	HET	INTERGENIC
SBS	Chr4	10966771	T-G	HOMO	INTERGENIC
SBS	Chr4	1920041	A-T	HOMO	STOP_GAINED	LOC_Os04g04150
SBS	Chr4	30216305	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51040
SBS	Chr4	34569086	T-C	HET	INTRON
SBS	Chr4	9250514	G-C	HET	INTRON
SBS	Chr5	11597718	C-T	HET	INTRON
SBS	Chr5	17227409	A-T	HET	INTERGENIC
SBS	Chr5	28426516	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	4324974	A-T	HET	INTERGENIC
SBS	Chr6	16596526	A-T	HET	INTRON
SBS	Chr6	20485794	G-C	HOMO	INTERGENIC
SBS	Chr6	28036444	A-G	HET	INTERGENIC
SBS	Chr6	500126	C-A	HET	INTRON
SBS	Chr6	8549498	G-T	HET	INTERGENIC
SBS	Chr7	13184355	T-C	HET	INTERGENIC
SBS	Chr7	13337529	G-T	HET	INTERGENIC
SBS	Chr7	14047645	G-A	HET	INTERGENIC
SBS	Chr7	17743065	C-T	HET	INTERGENIC
SBS	Chr7	18752786	G-A	HET	INTERGENIC
SBS	Chr7	23443523	C-T	HET	INTERGENIC
SBS	Chr8	10804908	G-T	HET	UTR_3_PRIME
SBS	Chr8	10804909	C-G	HET	UTR_3_PRIME
SBS	Chr8	14613361	C-A	HET	INTERGENIC
SBS	Chr8	18621274	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30270
SBS	Chr8	23425182	G-A	HET	INTERGENIC
SBS	Chr8	23530689	G-A	HET	INTERGENIC
SBS	Chr8	27607640	G-A	HET	INTERGENIC
SBS	Chr8	4036661	G-A	HET	INTERGENIC
SBS	Chr9	5877833	G-A	HET	INTRON
SBS	Chr9	8083789	T-C	HOMO	SYNONYMOUS_CODING

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	924906	924907	1
Deletion	Chr3	3518715	3518716	1
Deletion	Chr5	4419569	4419570	1
Deletion	Chr10	5909001	5936000	26999	2
Deletion	Chr7	7677868	7677869	1
Deletion	Chr3	8597692	8597702	10
Deletion	Chr2	8652774	8652780	6
Deletion	Chr12	8980210	8980211	1
Deletion	Chr12	9527765	9527767	2
Deletion	Chr5	9578481	9578482	1
Deletion	Chr1	10076290	10076293	3	LOC_Os01g18000
Deletion	Chr12	10315826	10315827	1
Deletion	Chr3	11044541	11044546	5
Deletion	Chr4	11158336	11158337	1
Deletion	Chr1	11348001	11381000	32999	7
Deletion	Chr3	11684262	11684265	3	LOC_Os03g20650
Deletion	Chr5	12065517	12065519	2
Deletion	Chr2	12143001	12158000	14999	4
Deletion	Chr2	12162001	12254000	91999	9
Deletion	Chr4	13538990	13538991	1
Deletion	Chr7	14844217	14844218	1
Deletion	Chr10	17061001	17083000	21999	5
Deletion	Chr4	17143631	17143654	23
Deletion	Chr10	17375154	17375165	11
Deletion	Chr1	17774692	17774693	1
Deletion	Chr10	18925465	18925489	24	LOC_Os10g35400
Deletion	Chr2	19419067	19419144	77
Deletion	Chr6	20127119	20127120	1
Deletion	Chr5	22512001	22530000	17999	2
Deletion	Chr11	22843747	22843748	1
Deletion	Chr5	23712726	23712727	1
Deletion	Chr4	23946267	23946268	1
Deletion	Chr3	25927164	25927170	6
Deletion	Chr11	26202358	26202361	3	LOC_Os11g43400
Deletion	Chr2	27577232	27577234	2
Deletion	Chr2	28591406	28591407	1	LOC_Os02g46870
Deletion	Chr1	32403175	32403179	4
Deletion	Chr1	33448001	33462000	13999	3

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	39492207	39492208	2
Insertion	Chr12	17835352	17835355	4
Insertion	Chr2	26840177	26840177	1
Insertion	Chr3	18175295	18175295	1	LOC_Os03g31770
Insertion	Chr3	22297805	22297806	2
Insertion	Chr3	25195675	25195690	16
Insertion	Chr4	1516055	1516055	1
Insertion	Chr6	18108651	18108651	1
Insertion	Chr7	9604084	9604084	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	381977	1200592	LOC_Os05g03070
Inversion	Chr1	11102823	11349742

Translocations: 19

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	1239290	Chr2	32366705
Translocation	Chr4	2085576	Chr1	27847897
Translocation	Chr12	6215708	Chr2	1697512
Translocation	Chr8	7289747	Chr5	11351938	2
Translocation	Chr10	7831329	Chr2	17726625	2
Translocation	Chr12	7872156	Chr4	17768577
Translocation	Chr10	10314347	Chr4	24024459
Translocation	Chr12	11006322	Chr5	7925394
Translocation	Chr11	14753919	Chr6	9352429
Translocation	Chr5	16247996	Chr1	3244571
Translocation	Chr8	16273605	Chr6	18063972	LOC_Os08g26760
Translocation	Chr3	17857625	Chr1	27257035
Translocation	Chr3	17857630	Chr1	27257180
Translocation	Chr3	23107666	Chr1	3221995
Translocation	Chr12	25748407	Chr4	21768486	LOC_Os04g35720
Translocation	Chr12	26979106	Chr8	17178919
Translocation	Chr11	28094151	Chr3	1075626
Translocation	Chr2	29291335	Chr1	11102806	LOC_Os02g47880
Translocation	Chr2	29291358	Chr1	11101343	2

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