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Mutant Information

Mutant Name	FN3146-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3146-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13803024	G-C	HOMO	INTRON
SBS	Chr1	16607559	T-C	HET	INTERGENIC
SBS	Chr1	38389887	G-A	HOMO	SPLICE_SITE_REGION
SBS	Chr1	38771375	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g66760
SBS	Chr1	38771376	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	42413270	C-T	HOMO	INTERGENIC
SBS	Chr10	21441833	A-G	HOMO	INTRON
SBS	Chr11	4621986	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08660
SBS	Chr11	5389960	C-T	HET	INTERGENIC
SBS	Chr12	10699968	G-C	HET	INTERGENIC
SBS	Chr12	14049546	A-T	HET	INTERGENIC
SBS	Chr12	15530007	G-C	HET	INTERGENIC
SBS	Chr12	16403888	A-G	HET	INTERGENIC
SBS	Chr12	4409273	G-T	HET	INTERGENIC
SBS	Chr3	17627872	A-G	HET	INTERGENIC
SBS	Chr3	20553510	G-A	HET	INTRON
SBS	Chr3	20553511	G-A	HET	INTRON
SBS	Chr4	16662239	G-T	HET	INTERGENIC
SBS	Chr4	28856401	G-A	HOMO	INTERGENIC
SBS	Chr4	7003448	T-C	HET	SPLICE_SITE_REGION
SBS	Chr5	8493807	G-A	HOMO	INTRON
SBS	Chr6	11046324	C-T	HOMO	INTERGENIC
SBS	Chr6	17718346	G-C	HOMO	INTERGENIC
SBS	Chr6	25765958	G-A	HET	INTERGENIC
SBS	Chr6	4040818	C-G	HET	INTERGENIC
SBS	Chr7	16704958	G-A	HOMO	INTERGENIC
SBS	Chr7	18841793	A-G	HET	INTRON
SBS	Chr8	5966937	A-T	HOMO	INTRON
SBS	Chr8	5966938	G-T	HOMO	INTRON

Deletions: 61

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	79181	79182	1
Deletion	Chr9	83131	83132	1
Deletion	Chr9	106441	106442	1
Deletion	Chr9	106498	106499	1
Deletion	Chr9	218385	218386	1
Deletion	Chr9	517116	517132	16
Deletion	Chr3	587433	587434	1
Deletion	Chr9	783128	783129	1
Deletion	Chr10	1040328	1040329	1
Deletion	Chr9	1651315	1651327	12
Deletion	Chr10	2174975	2174979	4
Deletion	Chr5	2282713	2282714	1
Deletion	Chr9	2623773	2623828	55
Deletion	Chr10	3168477	3168478	1
Deletion	Chr5	4011866	4011867	1
Deletion	Chr9	4752951	4752980	29
Deletion	Chr2	5097571	5097573	2
Deletion	Chr10	5102176	5102177	1
Deletion	Chr4	5348461	5348465	4
Deletion	Chr9	5425176	5425220	44
Deletion	Chr9	6887630	6887636	6
Deletion	Chr8	6945174	6945175	1
Deletion	Chr8	7014505	7014506	1	LOC_Os08g11960
Deletion	Chr7	7016089	7016133	44	LOC_Os07g12360
Deletion	Chr11	7525201	7525239	38
Deletion	Chr10	7703766	7703768	2
Deletion	Chr10	7745591	7745592	1
Deletion	Chr3	8268304	8268305	1
Deletion	Chr8	8545415	8545416	1
Deletion	Chr6	8970001	8994000	23999	4
Deletion	Chr6	9002001	9064000	61999	9
Deletion	Chr9	9056858	9056859	1
Deletion	Chr6	9076001	9224000	147999	24
Deletion	Chr2	9331731	9331732	1
Deletion	Chr7	9847424	9847425	1
Deletion	Chr9	9932392	9932393	1
Deletion	Chr4	10014698	10014724	26
Deletion	Chr5	10472043	10472073	30	LOC_Os05g18200
Deletion	Chr1	10788053	10788056	3	LOC_Os01g19090
Deletion	Chr6	12550132	12550150	18
Deletion	Chr3	13471849	13471851	2
Deletion	Chr7	14413575	14413578	3
Deletion	Chr12	14813678	14813705	27
Deletion	Chr8	15155874	15155934	60	LOC_Os08g24990
Deletion	Chr3	16642652	16642654	2
Deletion	Chr12	16841767	16841770	3
Deletion	Chr12	16890436	16890438	2
Deletion	Chr8	17025543	17025544	1
Deletion	Chr4	20056133	20056134	1
Deletion	Chr10	20234052	20234070	18
Deletion	Chr2	22487980	22488022	42
Deletion	Chr5	22850177	22850178	1
Deletion	Chr7	22905918	22905944	26
Deletion	Chr7	23941077	23941078	1
Deletion	Chr5	25137321	25137336	15	LOC_Os05g43220
Deletion	Chr3	26762712	26762713	1
Deletion	Chr4	28330252	28330253	1
Deletion	Chr7	29088086	29088087	1
Deletion	Chr6	30706646	30706647	1
Deletion	Chr3	30924138	30924139	1
Deletion	Chr1	43027902	43027903	1	LOC_Os01g74260

Insertions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	29750561	29750561	1
Insertion	Chr1	31933798	31933798	1
Insertion	Chr10	15059864	15059865	2
Insertion	Chr10	7129462	7129462	1
Insertion	Chr11	23663207	23663207	1
Insertion	Chr12	13964221	13964221	1
Insertion	Chr12	17096932	17096932	1	LOC_Os12g28920
Insertion	Chr12	2146851	2146851	1
Insertion	Chr12	25131894	25131894	1
Insertion	Chr2	25918777	25918777	1
Insertion	Chr2	28634162	28634165	4
Insertion	Chr2	3945717	3945718	2
Insertion	Chr3	15054868	15054868	1
Insertion	Chr3	18305786	18305786	1
Insertion	Chr4	12266110	12266110	1
Insertion	Chr4	25990439	25990440	2
Insertion	Chr5	10732324	10732324	1
Insertion	Chr5	15920240	15920240	1
Insertion	Chr5	15980109	15980109	1	LOC_Os05g27480
Insertion	Chr5	26009614	26009614	1
Insertion	Chr5	29179565	29179565	1
Insertion	Chr5	9509534	9509534	1
Insertion	Chr5	9998349	9998350	2
Insertion	Chr6	18868762	18868762	1
Insertion	Chr6	8582650	8582650	1
Insertion	Chr7	2834866	2834866	1
Insertion	Chr7	8587516	8587516	1
Insertion	Chr8	20336371	20336371	1
Insertion	Chr9	228192	228192	1
Insertion	Chr9	4080964	4080964	1

No Inversion

Translocations: 27

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	4162628	Chr1	20756020	LOC_Os01g37160
Translocation	Chr11	5513624	Chr7	25234185
Translocation	Chr10	5559531	Chr7	10762025
Translocation	Chr6	5754105	Chr2	28969990
Translocation	Chr11	6942814	Chr6	2813614
Translocation	Chr12	8230194	Chr1	26332708
Translocation	Chr9	8410946	Chr7	28606426
Translocation	Chr7	8430062	Chr2	20809530	LOC_Os07g14760
Translocation	Chr7	8862383	Chr3	31102197	LOC_Os07g15360
Translocation	Chr7	8953433	Chr4	11550325
Translocation	Chr6	9286134	Chr4	6080062	LOC_Os04g11180
Translocation	Chr12	10274729	Chr2	28453106
Translocation	Chr12	10661954	Chr8	6838425
Translocation	Chr8	14570054	Chr3	19272405
Translocation	Chr9	15722973	Chr2	27810256
Translocation	Chr7	16050263	Chr6	16985200
Translocation	Chr8	16384197	Chr7	15520368
Translocation	Chr12	16443905	Chr7	11773467
Translocation	Chr12	16452519	Chr9	11596738
Translocation	Chr2	19180318	Chr1	33391489	LOC_Os02g32440
Translocation	Chr11	19390524	Chr2	23245299
Translocation	Chr11	26252007	Chr7	13389362
Translocation	Chr7	26539945	Chr3	18111952
Translocation	Chr12	27144999	Chr2	30406213
Translocation	Chr11	27716852	Chr10	528945
Translocation	Chr6	28266870	Chr1	17070688	2
Translocation	Chr11	28368125	Chr8	2141387	LOC_Os11g47150

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