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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13923366	T-G	HET	INTRON
SBS	Chr1	21436127	T-G	HET	INTRON
SBS	Chr1	21845423	A-T	HET	INTRON
SBS	Chr2	8009443	A-T	HET	INTRON
SBS	Chr2	23663010	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g39170
SBS	Chr2	24136845	T-A	HET	UTR_5_PRIME
SBS	Chr2	32547414	T-C	HET	INTERGENIC
SBS	Chr2	35438270	C-A	HET	INTRON
SBS	Chr3	16445928	G-A	HOMO	INTRON
SBS	Chr3	35595277	A-T	HOMO	INTRON
SBS	Chr4	25567241	G-A	HET	INTERGENIC
SBS	Chr5	14312977	T-G	HET	INTERGENIC
SBS	Chr6	10840072	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g19060
SBS	Chr6	14710109	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g25140
SBS	Chr7	20335933	A-C	HET	INTERGENIC
SBS	Chr8	7011405	C-T	HOMO	INTRON
SBS	Chr8	17137899	T-A	HOMO	INTERGENIC
SBS	Chr8	20684108	T-G	HET	INTERGENIC
SBS	Chr10	5415697	G-A	HOMO	INTERGENIC
SBS	Chr10	8605251	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	9940714	A-G	HOMO	INTERGENIC
SBS	Chr12	10761471	T-C	HET	INTRON
SBS	Chr12	12769804	T-A	HET	INTERGENIC
SBS	Chr12	12769805	C-A	HET	INTERGENIC
SBS	Chr12	12769806	T-A	HET	INTERGENIC
SBS	Chr12	26822345	C-A	HOMO	INTRON

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	460922	460931	9	LOC_Os11g01869
Deletion	Chr10	1334576	1334577	1
Deletion	Chr2	4120691	4120694	3
Deletion	Chr10	10274083	10274084	1	LOC_Os10g20430
Deletion	Chr10	10984982	10984988	6
Deletion	Chr10	11005060	11005068	8
Deletion	Chr8	15328935	15328952	17
Deletion	Chr5	15419406	15419407	1
Deletion	Chr4	16974001	17034000	59999	11
Deletion	Chr7	17560456	17560479	23
Deletion	Chr11	19416594	19416598	4
Deletion	Chr5	20714043	20714051	8
Deletion	Chr6	22533471	22533475	4
Deletion	Chr6	25550955	25550957	2
Deletion	Chr3	34512959	34512981	22
Deletion	Chr1	36594930	36594931	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40421947	40421950	4
Insertion	Chr1	37427266	37427266	1
Insertion	Chr4	8157076	8157081	6
Insertion	Chr4	10172187	10172187	1
Insertion	Chr5	11580365	11580365	1
Insertion	Chr7	23025757	23025757	1
Insertion	Chr7	25178330	25178331	2	LOC_Os07g42060
Insertion	Chr10	14002198	14002198	1
Insertion	Chr11	17738803	17738811	9
Insertion	Chr11	22388538	22388543	6
Insertion	Chr12	13711232	13711232	1

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5432430	5532171	LOC_Os12g10440
Inversion	Chr12	5432441	5532179	LOC_Os12g10440
Inversion	Chr6	14679346	14713263
Inversion	Chr10	15536814	15542108
Inversion	Chr4	16649706	16972493
Inversion	Chr7	17738797	18670933
Inversion	Chr7	18670925	18736324
Inversion	Chr5	27244486	27357333	LOC_Os05g47750
Inversion	Chr5	27357298	27361632	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3097222	Chr3	6443052
Translocation	Chr12	5124038	Chr1	8155925
Translocation	Chr9	12312643	Chr2	17968132
Translocation	Chr10	15536819	Chr9	4206121
Translocation	Chr7	18736625	Chr5	5852815
Translocation	Chr8	25853950	Chr4	16536484	2

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