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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7776176	G-T	HET	SYNONYMOUS_CODING
SBS	Chr1	28124056	G-A	HOMO	INTERGENIC
SBS	Chr1	40152355	T-A	HET	INTERGENIC
SBS	Chr2	4771986	C-T	HET	INTERGENIC
SBS	Chr2	15057506	T-A	HET	INTERGENIC
SBS	Chr2	32472234	T-A	HET	INTRON
SBS	Chr3	4609325	G-T	HET	INTRON
SBS	Chr3	12369760	C-T	HOMO	INTERGENIC
SBS	Chr3	20195633	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36460
SBS	Chr3	20195638	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36460
SBS	Chr3	27054328	T-A	HOMO	INTERGENIC
SBS	Chr4	47915	C-T	HET	INTRON
SBS	Chr4	12040014	C-T	HET	INTERGENIC
SBS	Chr4	13700692	G-A	HET	INTERGENIC
SBS	Chr4	28678826	G-T	HET	INTERGENIC
SBS	Chr4	32454540	A-T	HET	INTRON
SBS	Chr5	5509857	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g09724
SBS	Chr5	12801365	C-T	HET	INTRON
SBS	Chr5	25829495	G-T	HET	INTERGENIC
SBS	Chr5	27677405	A-T	HET	INTRON
SBS	Chr6	604482	C-T	HET	INTERGENIC
SBS	Chr6	27308310	T-G	HET	INTERGENIC
SBS	Chr7	5035594	G-C	HET	INTERGENIC
SBS	Chr7	10246334	C-T	HET	INTERGENIC
SBS	Chr7	10483236	G-A	HET	INTERGENIC
SBS	Chr7	14724395	T-C	HET	INTRON
SBS	Chr7	15159477	C-A	HET	INTERGENIC
SBS	Chr7	22240526	G-A	HOMO	INTERGENIC
SBS	Chr7	22665573	C-A	HOMO	INTERGENIC
SBS	Chr9	11971250	C-T	HOMO	INTERGENIC
SBS	Chr9	18821938	T-C	HET	INTERGENIC
SBS	Chr10	12206886	T-C	HOMO	INTERGENIC
SBS	Chr11	12788717	G-A	HOMO	STOP_GAINED	LOC_Os11g22310
SBS	Chr12	22007103	C-T	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	759517	759549	32
Deletion	Chr6	1395994	1396008	14
Deletion	Chr5	1542031	1542047	16
Deletion	Chr12	3444259	3444260	1
Deletion	Chr8	8685024	8685029	5
Deletion	Chr8	9017537	9017546	9	LOC_Os08g14950
Deletion	Chr11	9481168	9481170	2	LOC_Os11g17090
Deletion	Chr5	9613001	9623000	9999	3
Deletion	Chr4	19147788	19147790	2
Deletion	Chr8	19826502	19826515	13
Deletion	Chr5	20603982	20603998	16
Deletion	Chr12	24421222	24421231	9	LOC_Os12g39580
Deletion	Chr1	25680717	25680742	25
Deletion	Chr1	25818540	25818547	7
Deletion	Chr1	26131884	26131886	2
Deletion	Chr1	28916713	28916714	1
Deletion	Chr1	31542201	31542204	3

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27134019	27134020	2
Insertion	Chr2	20509365	20509366	2
Insertion	Chr5	28989315	28989316	2
Insertion	Chr6	18870148	18870148	1	LOC_Os06g32450
Insertion	Chr8	6082318	6082318	1
Insertion	Chr9	58947	58947	1
Insertion	Chr9	1255024	1255029	6
Insertion	Chr9	9711261	9711261	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9051074	9051391
Inversion	Chr10	10589404	10662785	2
Inversion	Chr10	10589407	10662802	2
Inversion	Chr5	25529883	25532301
Inversion	Chr5	25529888	25532298

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5022234	Chr2	25341988
Translocation	Chr11	5026077	Chr8	3815136
Translocation	Chr10	8142033	Chr4	16264617
Translocation	Chr9	10353479	Chr5	14533928
Translocation	Chr9	10898070	Chr8	12123008	LOC_Os09g17810
Translocation	Chr8	12720752	Chr5	27404610
Translocation	Chr3	20751017	Chr2	5356666
Translocation	Chr10	21733824	Chr2	18290254	LOC_Os02g30700
Translocation	Chr6	23608265	Chr2	20852148
Translocation	Chr6	23615509	Chr2	29578892
Translocation	Chr6	23615606	Chr2	29578899

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