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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13500769	A-C	HET	SYNONYMOUS_CODING
SBS	Chr1	19671802	G-A	HOMO	INTERGENIC
SBS	Chr1	29195752	C-T	HOMO	INTERGENIC
SBS	Chr2	5253649	C-T	HOMO	UTR_3_PRIME
SBS	Chr2	12882235	C-T	HOMO	INTERGENIC
SBS	Chr2	25591930	T-C	HET	UTR_3_PRIME
SBS	Chr2	25670334	C-G	HET	INTRON
SBS	Chr2	33541610	T-A	HET	INTERGENIC
SBS	Chr3	967144	G-A	HET	INTERGENIC
SBS	Chr3	3032084	T-A	HET	INTERGENIC
SBS	Chr3	7860161	G-A	HET	INTERGENIC
SBS	Chr3	8942714	T-C	HET	INTERGENIC
SBS	Chr3	12643994	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g22060
SBS	Chr3	21024279	G-A	HET	INTERGENIC
SBS	Chr3	21529027	C-T	HET	STOP_GAINED	LOC_Os03g38764
SBS	Chr3	24198597	A-G	HET	INTERGENIC
SBS	Chr3	26484048	T-G	HOMO	INTERGENIC
SBS	Chr4	18993863	C-T	HET	INTERGENIC
SBS	Chr4	23590517	C-T	HET	INTERGENIC
SBS	Chr4	25939468	C-T	HET	INTRON
SBS	Chr5	6909701	G-T	HOMO	INTERGENIC
SBS	Chr5	14050171	A-G	HOMO	INTERGENIC
SBS	Chr5	16643172	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g28420
SBS	Chr6	23742599	T-C	HET	INTERGENIC
SBS	Chr7	4184960	G-C	HET	INTERGENIC
SBS	Chr7	4184967	G-A	HET	INTERGENIC
SBS	Chr7	11306933	G-A	HOMO	INTERGENIC
SBS	Chr8	1019623	T-A	HOMO	INTERGENIC
SBS	Chr8	26027774	G-A	HOMO	INTRON
SBS	Chr9	2674439	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04970
SBS	Chr9	4091276	C-T	HET	INTRON
SBS	Chr9	8659848	A-G	HET	INTERGENIC
SBS	Chr9	9200364	C-A	HET	INTERGENIC
SBS	Chr10	247487	C-A	HET	INTERGENIC
SBS	Chr11	20269828	T-A	HET	INTRON
SBS	Chr11	22248546	T-C	HET	INTERGENIC
SBS	Chr12	11773163	A-T	HET	INTERGENIC
SBS	Chr12	19310802	G-A	HOMO	INTERGENIC
SBS	Chr12	21133387	C-A	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	288207	288208	1
Deletion	Chr11	1332141	1332147	6
Deletion	Chr2	2526397	2526402	5
Deletion	Chr2	6760636	6760643	7
Deletion	Chr11	7217400	7217408	8
Deletion	Chr1	7821787	7821789	2
Deletion	Chr2	8034957	8034958	1	LOC_Os02g14570
Deletion	Chr11	8984001	9000000	15999	LOC_Os11g16370
Deletion	Chr3	10728416	10728422	6
Deletion	Chr12	13170112	13170114	2
Deletion	Chr6	14634524	14634565	41
Deletion	Chr12	14971531	14971532	1
Deletion	Chr10	16708385	16708394	9
Deletion	Chr9	16805818	16805820	2
Deletion	Chr12	18322328	18322331	3
Deletion	Chr1	18977615	18977617	2
Deletion	Chr9	22867317	22867318	1
Deletion	Chr5	23224399	23224400	1
Deletion	Chr4	23234997	23234998	1
Deletion	Chr8	23803935	23803948	13
Deletion	Chr6	24414618	24414620	2
Deletion	Chr12	26393472	26393473	1
Deletion	Chr1	26582459	26582461	2
Deletion	Chr3	26964001	26997000	32999	4

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	4342927	4342931	5
Insertion	Chr3	28548899	28548900	2
Insertion	Chr5	404964	404965	2
Insertion	Chr10	5167946	5167949	4
Insertion	Chr8	2169998	2169999	2
Insertion	Chr8	16691406	16691406	1
Insertion	Chr9	6144438	6144438	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	17607724	17869188
Inversion	Chr7	17607758	18209414
Inversion	Chr7	17673125	18025942	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr10	4969564	Chr6	5102122
Translocation	Chr10	4969565	Chr7	18007963
Translocation	Chr4	27007926	Chr2	28383914
Translocation	Chr11	27925424	Chr10	15149102

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