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Mutant Information

Mutant Name	FN3164-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3164-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13779648	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24440
SBS	Chr1	18337566	G-A	HET	INTERGENIC
SBS	Chr1	31060495	G-A	HET	INTERGENIC
SBS	Chr1	41721380	A-T	HOMO	INTRON
SBS	Chr1	41721381	C-A	HOMO	INTRON
SBS	Chr1	41811128	G-A	HOMO	INTERGENIC
SBS	Chr10	1352561	A-C	HOMO	INTERGENIC
SBS	Chr10	19084243	C-A	HET	INTERGENIC
SBS	Chr11	13406399	T-G	HET	SYNONYMOUS_CODING
SBS	Chr11	17364108	A-T	HOMO	INTRON
SBS	Chr11	17364109	C-T	HOMO	INTRON
SBS	Chr11	23199386	T-G	HOMO	INTERGENIC
SBS	Chr11	9689970	G-T	HET	INTRON
SBS	Chr12	18268721	C-T	HET	INTERGENIC
SBS	Chr12	20076114	C-T	HET	INTERGENIC
SBS	Chr12	9525483	A-G	HET	INTERGENIC
SBS	Chr2	13703459	G-C	HET	INTERGENIC
SBS	Chr2	13713552	C-T	HET	INTERGENIC
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	29569074	T-A	HET	INTERGENIC
SBS	Chr2	30661181	C-A	HET	INTERGENIC
SBS	Chr2	33182031	G-T	HET	INTERGENIC
SBS	Chr2	6545319	G-A	HET	INTERGENIC
SBS	Chr3	10396003	T-C	HET	INTERGENIC
SBS	Chr3	25981579	G-A	HOMO	INTRON
SBS	Chr3	30512905	T-A	HET	INTERGENIC
SBS	Chr3	30512907	T-A	HET	INTERGENIC
SBS	Chr3	32123966	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g56360
SBS	Chr4	20311928	T-C	HET	INTERGENIC
SBS	Chr4	30937043	T-A	HET	INTERGENIC
SBS	Chr4	34058907	C-T	HET	INTERGENIC
SBS	Chr5	10703618	T-C	HET	INTERGENIC
SBS	Chr5	11557312	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19850
SBS	Chr5	18051069	G-A	HET	INTERGENIC
SBS	Chr5	19451109	G-A	HET	INTERGENIC
SBS	Chr5	20785899	A-G	HOMO	INTERGENIC
SBS	Chr5	29886601	T-A	HOMO	INTRON
SBS	Chr5	3467269	C-T	HOMO	INTRON
SBS	Chr5	4151752	C-T	HET	INTERGENIC
SBS	Chr6	22016114	T-A	HET	INTERGENIC
SBS	Chr6	26111661	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g43450
SBS	Chr6	3089866	T-C	HET	INTERGENIC
SBS	Chr6	4756172	G-T	HOMO	INTERGENIC
SBS	Chr7	2609366	C-A	HET	INTERGENIC
SBS	Chr8	5664274	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g09800
SBS	Chr9	15655367	T-G	HET	INTERGENIC
SBS	Chr9	15655368	G-T	HET	INTERGENIC

Deletions: 45

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1463122	1463123	1	LOC_Os07g03630
Deletion	Chr4	2821675	2821680	5	LOC_Os04g05570
Deletion	Chr1	3441738	3441746	8
Deletion	Chr8	6054409	6054410	1
Deletion	Chr7	6076771	6076853	82
Deletion	Chr12	6176575	6176576	1
Deletion	Chr4	6840520	6840592	72	LOC_Os04g12390
Deletion	Chr4	7149537	7149549	12
Deletion	Chr3	8290593	8290595	2
Deletion	Chr5	8296306	8296307	1
Deletion	Chr1	8615204	8615205	1
Deletion	Chr8	9574971	9574972	1
Deletion	Chr1	10263001	10287000	23999	2
Deletion	Chr4	10480252	10480341	89	LOC_Os04g18840
Deletion	Chr5	10614402	10614491	89
Deletion	Chr4	10720330	10720331	1	LOC_Os04g19270
Deletion	Chr3	10735738	10735739	1
Deletion	Chr1	11100160	11100164	4
Deletion	Chr5	14803613	14803616	3
Deletion	Chr11	14868648	14868649	1
Deletion	Chr10	15524602	15524611	9	LOC_Os10g29880
Deletion	Chr7	15533982	15533983	1
Deletion	Chr5	17235001	17267000	31999	4
Deletion	Chr11	17706471	17706499	28
Deletion	Chr9	18632402	18632403	1
Deletion	Chr4	19255663	19255744	81
Deletion	Chr12	21129441	21129443	2
Deletion	Chr6	21739120	21739124	4
Deletion	Chr8	22474645	22474679	34
Deletion	Chr8	22509008	22509009	1
Deletion	Chr6	22880828	22880882	54
Deletion	Chr2	23136471	23136472	1
Deletion	Chr5	23265857	23265859	2
Deletion	Chr11	23783077	23783079	2
Deletion	Chr1	25255238	25255244	6
Deletion	Chr8	25298963	25298964	1
Deletion	Chr3	26131464	26131470	6	LOC_Os03g46220
Deletion	Chr4	26418614	26418615	1
Deletion	Chr11	26537400	26537401	1
Deletion	Chr1	27552136	27552139	3
Deletion	Chr5	28410535	28410540	5
Deletion	Chr11	28877434	28877436	2
Deletion	Chr1	30210595	30210677	82
Deletion	Chr2	32366555	32366556	1
Deletion	Chr2	32933001	32944000	10999	LOC_Os02g53930

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	31772635	31772635	1
Insertion	Chr11	25113040	25113049	10
Insertion	Chr11	25983201	25983201	1
Insertion	Chr2	9264158	9264158	1
Insertion	Chr4	18552929	18552929	1
Insertion	Chr4	6206068	6206068	1
Insertion	Chr4	8179003	8179003	1
Insertion	Chr5	11023918	11023918	1
Insertion	Chr6	10303215	10303215	1
Insertion	Chr7	12414826	12414826	1
Insertion	Chr9	3286018	3286018	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	16853076	17132093	2
Inversion	Chr5	17132084	17287963

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3634200	Chr2	4744445
Translocation	Chr12	4980290	Chr2	3401992
Translocation	Chr8	6367663	Chr7	9689858
Translocation	Chr11	8196313	Chr4	13912159
Translocation	Chr11	8480179	Chr6	19235413
Translocation	Chr3	8639609	Chr2	18421769
Translocation	Chr5	8774612	Chr4	16101853	LOC_Os04g27250
Translocation	Chr3	10613119	Chr1	23075437
Translocation	Chr12	11272885	Chr8	25751367
Translocation	Chr12	13512467	Chr2	18912678	LOC_Os12g23780
Translocation	Chr12	13545230	Chr4	6233509	LOC_Os04g11410
Translocation	Chr12	15658464	Chr8	15380701
Translocation	Chr11	19878349	Chr3	1946824	LOC_Os03g04230
Translocation	Chr6	24355870	Chr2	22003094
Translocation	Chr8	28403329	Chr7	4246458

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