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Mutant Information

Mutant Name	FN3165-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3165-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14628700	C-A	HOMO	INTERGENIC
SBS	Chr1	32519950	A-T	HET	SYNONYMOUS_CODING
SBS	Chr10	16055731	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	16795333	C-T	HET	INTRON
SBS	Chr10	16795337	G-T	HET	INTRON
SBS	Chr10	20516655	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	20516656	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g38402
SBS	Chr11	10162797	G-A	HET	INTERGENIC
SBS	Chr11	12829976	A-T	HET	INTERGENIC
SBS	Chr12	11937854	C-T	HOMO	INTERGENIC
SBS	Chr12	18002467	C-T	HOMO	INTRON
SBS	Chr12	22272617	C-T	HOMO	STOP_GAINED	LOC_Os12g36380
SBS	Chr12	4311369	G-A	HOMO	INTRON
SBS	Chr12	7473375	A-T	HOMO	INTERGENIC
SBS	Chr2	14378463	C-A	HOMO	INTRON
SBS	Chr2	16911492	G-T	HOMO	INTRON
SBS	Chr2	19989165	C-T	HET	INTERGENIC
SBS	Chr2	28083502	C-T	HET	INTERGENIC
SBS	Chr2	28822167	A-C	HET	INTRON
SBS	Chr3	14149567	T-C	HET	SYNONYMOUS_CODING
SBS	Chr3	28200199	G-A	HET	INTERGENIC
SBS	Chr3	29652658	G-A	HET	INTERGENIC
SBS	Chr4	1605980	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	2095308	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04400
SBS	Chr4	33889385	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56850
SBS	Chr4	8916912	T-A	HET	INTERGENIC
SBS	Chr5	16890867	T-A	HET	INTRON
SBS	Chr5	6519464	T-A	HOMO	INTERGENIC
SBS	Chr5	7855875	G-C	HET	INTERGENIC
SBS	Chr6	12203578	A-G	HOMO	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	19580338	A-C	HOMO	INTERGENIC
SBS	Chr6	7345165	G-C	HOMO	INTERGENIC
SBS	Chr6	7782338	G-A	HET	INTRON
SBS	Chr7	1436141	A-T	HOMO	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr7	26701797	G-C	HET	INTRON
SBS	Chr7	27739298	G-A	HET	INTERGENIC
SBS	Chr9	11216690	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	6569800	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	6622486	T-A	HET	INTERGENIC
SBS	Chr9	9909398	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16230

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	769349	769358	9
Deletion	Chr11	3402958	3402959	1	LOC_Os11g06920
Deletion	Chr1	4767001	4777000	9999	LOC_Os01g09384
Deletion	Chr1	4781001	4842000	60999	11
Deletion	Chr9	7356049	7356916	867
Deletion	Chr12	7453314	7453318	4
Deletion	Chr7	8165671	8165672	1
Deletion	Chr8	8387525	8387526	1
Deletion	Chr10	9404388	9404411	23
Deletion	Chr4	11666862	11666866	4
Deletion	Chr2	11931805	11931806	1
Deletion	Chr11	12157466	12157467	1
Deletion	Chr5	13812545	13812580	35
Deletion	Chr7	13903213	13903215	2
Deletion	Chr9	15848817	15848858	41
Deletion	Chr6	16844212	16844219	7
Deletion	Chr10	20184321	20184371	50
Deletion	Chr10	20502589	20502590	1
Deletion	Chr6	20738754	20738756	2
Deletion	Chr7	21189500	21189502	2
Deletion	Chr8	22128427	22128431	4
Deletion	Chr7	24644201	24644202	1
Deletion	Chr6	24982279	24982286	7
Deletion	Chr6	25662382	25662391	9
Deletion	Chr6	25988358	25988359	1
Deletion	Chr8	26803958	26803970	12
Deletion	Chr8	28307514	28307515	1
Deletion	Chr6	28569001	28586000	16999	LOC_Os06g50960
Deletion	Chr4	28811609	28811614	5
Deletion	Chr2	30406424	30406426	2
Deletion	Chr4	32893831	32893832	1
Deletion	Chr1	35896812	35896813	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20810863	20810863	1
Insertion	Chr1	42907856	42907859	4
Insertion	Chr12	13076843	13076843	1
Insertion	Chr12	25976035	25976036	2
Insertion	Chr5	25552582	25552582	1
Insertion	Chr5	25867602	25867602	1
Insertion	Chr7	12087805	12087805	1
Insertion	Chr7	17965031	17965031	1
Insertion	Chr7	24854156	24854157	2
Insertion	Chr8	14868290	14868290	1
Insertion	Chr8	6483063	6483063	1
Insertion	Chr9	225378	225378	1

No Inversion

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	34037	Chr3	16882320
Translocation	Chr3	4463815	Chr2	2674139	LOC_Os02g05530
Translocation	Chr9	5118424	Chr1	26919364
Translocation	Chr9	5118428	Chr1	26927575
Translocation	Chr11	7158246	Chr10	6978185
Translocation	Chr8	10343873	Chr1	11602709
Translocation	Chr8	10388279	Chr1	11602708
Translocation	Chr11	13485820	Chr2	18272186
Translocation	Chr12	15953891	Chr9	1340903
Translocation	Chr4	16579755	Chr2	21668128
Translocation	Chr7	22010603	Chr3	8428627
Translocation	Chr11	22193654	Chr4	5327082
Translocation	Chr11	23694688	Chr1	25246388

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