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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21190438	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g37860
SBS	Chr1	28906157	C-T	HET	INTERGENIC
SBS	Chr1	32570228	A-G	HET	INTERGENIC
SBS	Chr1	8146677	A-T	HOMO	UTR_3_PRIME
SBS	Chr1	8857408	A-T	HOMO	INTERGENIC
SBS	Chr11	10752594	G-A	HET	INTRON
SBS	Chr11	17742647	C-T	HET	INTERGENIC
SBS	Chr11	2197842	C-T	HET	INTERGENIC
SBS	Chr11	5785518	C-T	HOMO	INTRON
SBS	Chr11	9985118	G-A	HET	INTERGENIC
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	5021885	A-G	HET	INTRON
SBS	Chr12	6691932	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g12190
SBS	Chr12	6691933	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	28492086	C-A	HET	INTRON
SBS	Chr2	8121376	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g14720
SBS	Chr2	9093184	C-A	HET	INTRON
SBS	Chr3	7900689	G-A	HOMO	INTRON
SBS	Chr3	8536373	C-G	HOMO	INTERGENIC
SBS	Chr4	3749247	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07070
SBS	Chr4	9571247	C-T	HOMO	INTERGENIC
SBS	Chr5	1844545	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	13710812	G-A	HET	INTRON
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr6	31199284	G-A	HOMO	INTERGENIC
SBS	Chr6	5061877	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g09930
SBS	Chr6	5413710	T-A	HET	INTERGENIC
SBS	Chr7	19135873	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32190
SBS	Chr7	24044283	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	9446152	A-C	HOMO	INTRON
SBS	Chr8	9446153	C-T	HOMO	INTRON

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1505729	1505743	14
Deletion	Chr10	4566881	4566894	13
Deletion	Chr1	4961944	4961952	8
Deletion	Chr5	6082375	6082376	1
Deletion	Chr6	6273653	6273654	1
Deletion	Chr9	6312370	6312379	9
Deletion	Chr6	6390954	6390964	10
Deletion	Chr5	7615570	7615571	1	LOC_Os05g13740
Deletion	Chr6	8679783	8679808	25
Deletion	Chr2	9264620	9264621	1
Deletion	Chr7	9407154	9407155	1
Deletion	Chr4	9633809	9633824	15
Deletion	Chr9	10375433	10375474	41	LOC_Os09g16970
Deletion	Chr4	11919744	11919755	11
Deletion	Chr4	12180464	12180465	1
Deletion	Chr11	12595172	12595173	1
Deletion	Chr2	13032346	13032347	1
Deletion	Chr5	13871527	13871528	1
Deletion	Chr5	13948039	13948098	59
Deletion	Chr2	14730535	14730537	2
Deletion	Chr12	15733344	15733348	4	LOC_Os12g26850
Deletion	Chr10	15809001	15846000	36999	6
Deletion	Chr6	16047945	16047967	22
Deletion	Chr2	16439674	16439675	1
Deletion	Chr6	16517917	16517925	8	LOC_Os06g28980
Deletion	Chr12	16910114	16910117	3	LOC_Os12g28590
Deletion	Chr2	18782842	18782879	37
Deletion	Chr3	20246870	20246872	2
Deletion	Chr9	20274111	20274114	3	LOC_Os09g34340
Deletion	Chr3	20810676	20810677	1	LOC_Os03g37500
Deletion	Chr4	21212730	21212731	1
Deletion	Chr10	22408168	22408169	1
Deletion	Chr11	24200200	24200206	6
Deletion	Chr11	26705709	26705710	1
Deletion	Chr11	27065427	27065430	3
Deletion	Chr5	28885194	28885197	3
Deletion	Chr6	29639996	29640003	7
Deletion	Chr3	32187619	32187637	18	LOC_Os03g56480

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14535519	14535519	1
Insertion	Chr11	14181427	14181427	1
Insertion	Chr12	11636664	11636664	1
Insertion	Chr3	18343558	18343558	1
Insertion	Chr7	27303830	27303830	1
Insertion	Chr7	4253332	4253332	1
Insertion	Chr8	25987762	25987762	1
Insertion	Chr9	19195374	19195374	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2642983	3249893	LOC_Os03g05380
Inversion	Chr3	2647456	3250004
Inversion	Chr8	8582395	8865174	LOC_Os08g14320
Inversion	Chr8	8582399	8624298	2
Inversion	Chr10	15137651	15336193
Inversion	Chr10	15315791	15336189	LOC_Os10g29490

Translocations: 20

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4131080	Chr2	24389251
Translocation	Chr10	4528653	Chr5	5203626
Translocation	Chr9	4945340	Chr7	10938238
Translocation	Chr10	5039112	Chr5	15327794
Translocation	Chr8	6079397	Chr7	19805110	2
Translocation	Chr5	6098903	Chr4	5793780
Translocation	Chr6	7782063	Chr1	32154696
Translocation	Chr9	10898021	Chr1	13547187
Translocation	Chr10	15137662	Chr3	2642998	LOC_Os03g05380
Translocation	Chr12	15684244	Chr9	7416630
Translocation	Chr10	15810800	Chr2	25422835	LOC_Os10g30410
Translocation	Chr10	15846308	Chr4	22418587
Translocation	Chr10	15865228	Chr4	22418575
Translocation	Chr8	15958057	Chr2	610890	LOC_Os02g02080
Translocation	Chr7	16998626	Chr4	22551334	LOC_Os04g37920
Translocation	Chr10	18185378	Chr9	3032276	LOC_Os09g06440
Translocation	Chr12	18397016	Chr4	35416079
Translocation	Chr8	28197584	Chr3	1961324
Translocation	Chr11	28436131	Chr4	22510409	LOC_Os11g47290
Translocation	Chr2	29427397	Chr1	37455144

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