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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34636409	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g59890
SBS	Chr1	35851934	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g61930
SBS	Chr10	10112130	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g20139
SBS	Chr11	11917951	T-G	HOMO	INTRON
SBS	Chr11	17757142	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g30530
SBS	Chr11	19493133	G-A	HOMO	INTERGENIC
SBS	Chr11	23997289	G-T	HET	INTERGENIC
SBS	Chr2	706438	C-T	HET	INTERGENIC
SBS	Chr3	18818890	C-G	HOMO	INTERGENIC
SBS	Chr3	36049260	G-C	HET	INTERGENIC
SBS	Chr4	13378253	T-A	HET	INTRON
SBS	Chr4	16528155	G-A	HOMO	INTERGENIC
SBS	Chr4	16528156	C-A	HOMO	INTERGENIC
SBS	Chr4	20314643	C-A	HOMO	INTERGENIC
SBS	Chr4	24413752	T-A	HOMO	INTERGENIC
SBS	Chr4	27330602	G-T	HOMO	INTERGENIC
SBS	Chr4	3256374	A-T	HOMO	INTERGENIC
SBS	Chr5	10319048	G-T	HET	INTERGENIC
SBS	Chr5	12482851	G-A	HET	INTERGENIC
SBS	Chr5	12797453	C-T	HOMO	INTERGENIC
SBS	Chr5	15277141	C-T	HOMO	INTRON
SBS	Chr5	27885983	T-A	HET	INTERGENIC
SBS	Chr5	887904	C-A	HOMO	INTERGENIC
SBS	Chr6	11347405	G-A	HET	INTERGENIC
SBS	Chr6	21768071	A-G	HET	INTERGENIC
SBS	Chr6	28117153	A-G	HOMO	INTERGENIC
SBS	Chr7	1218070	T-C	HET	INTERGENIC
SBS	Chr7	14248359	C-G	HET	INTERGENIC
SBS	Chr7	19070183	T-C	HET	INTERGENIC
SBS	Chr7	457330	G-A	HET	INTRON
SBS	Chr7	7202184	C-T	HET	INTERGENIC
SBS	Chr7	7296632	C-T	HET	INTERGENIC
SBS	Chr8	11002016	G-A	HOMO	INTERGENIC
SBS	Chr8	7976934	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	8172301	A-T	HET	INTERGENIC
SBS	Chr9	113095	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01100
SBS	Chr9	113096	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01100
SBS	Chr9	13623692	G-T	HOMO	INTERGENIC
SBS	Chr9	676200	T-A	HET	INTERGENIC
SBS	Chr9	7930710	C-A	HOMO	INTRON

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	983508	983510	2
Deletion	Chr8	2528942	2528943	1
Deletion	Chr4	3170060	3170083	23
Deletion	Chr4	3251001	3331000	79999	11
Deletion	Chr4	3350476	3350499	23
Deletion	Chr12	5146485	5146499	14
Deletion	Chr3	5878807	5878812	5
Deletion	Chr8	5933067	5933068	1
Deletion	Chr10	6421361	6421363	2
Deletion	Chr2	6834363	6834367	4
Deletion	Chr10	8253274	8253275	1
Deletion	Chr10	8646076	8646077	1
Deletion	Chr8	8869889	8869904	15
Deletion	Chr9	9619287	9619295	8
Deletion	Chr11	9697248	9697352	104	LOC_Os11g17390
Deletion	Chr12	11141520	11141604	84
Deletion	Chr12	12042521	12042523	2
Deletion	Chr11	14760152	14760154	2
Deletion	Chr5	16447666	16447691	25
Deletion	Chr10	16541943	16541944	1
Deletion	Chr1	16644005	16644008	3
Deletion	Chr1	17176615	17176628	13
Deletion	Chr6	17293178	17293194	16
Deletion	Chr5	19149008	19149009	1	LOC_Os05g32700
Deletion	Chr12	20336751	20336752	1	LOC_Os12g33690
Deletion	Chr12	21281690	21281695	5
Deletion	Chr7	21625925	21625926	1
Deletion	Chr9	21903222	21903224	2
Deletion	Chr5	24952707	24952708	1
Deletion	Chr4	27343770	27343777	7
Deletion	Chr1	30128807	30128808	1
Deletion	Chr4	31571148	31571149	1
Deletion	Chr4	33953954	33953960	6

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	8357868	8357868	1
Insertion	Chr11	20080915	20080916	2
Insertion	Chr11	2651684	2651684	1
Insertion	Chr3	31990768	31990768	1
Insertion	Chr4	3005547	3005547	1
Insertion	Chr4	3005728	3005728	1
Insertion	Chr4	3248300	3248301	2
Insertion	Chr4	3366271	3366271	1
Insertion	Chr6	5344770	5344771	2
Insertion	Chr7	23377254	23377254	1
Insertion	Chr7	23752157	23752164	8
Insertion	Chr7	6425782	6425782	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr6	6586703	6762451
Inversion	Chr6	6586708	6762454
Inversion	Chr11	6641828	6832561

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3359896	Chr6	22814703	LOC_Os10g06540
Translocation	Chr4	4247532	Chr3	25764638	LOC_Os04g07980
Translocation	Chr8	7565191	Chr6	15609133
Translocation	Chr6	8399582	Chr1	17298369
Translocation	Chr6	9420334	Chr5	18398179	2
Translocation	Chr6	10428823	Chr4	742415
Translocation	Chr6	10442600	Chr3	22985988
Translocation	Chr10	11400136	Chr2	17608408
Translocation	Chr8	11903632	Chr1	21598870
Translocation	Chr10	13273511	Chr3	36164375
Translocation	Chr12	14276140	Chr7	29018361
Translocation	Chr8	20336255	Chr4	3256367
Translocation	Chr6	22514562	Chr4	3026470	LOC_Os04g05880
Translocation	Chr4	25271417	Chr2	27312666
Translocation	Chr11	27705540	Chr5	23588478	2

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