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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14258265	T-G	HOMO	INTERGENIC
SBS	Chr1	24089903	T-A	HET	INTERGENIC
SBS	Chr1	24776029	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g43340
SBS	Chr1	35032151	C-A	HET	INTERGENIC
SBS	Chr1	7612057	G-A	HET	INTERGENIC
SBS	Chr1	9910432	G-A	HOMO	INTERGENIC
SBS	Chr11	27201548	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g44940
SBS	Chr12	11407707	T-C	HOMO	INTERGENIC
SBS	Chr12	6818486	T-A	HET	STOP_GAINED	LOC_Os12g12380
SBS	Chr2	2144828	T-C	HOMO	INTERGENIC
SBS	Chr2	6653368	C-T	HET	INTERGENIC
SBS	Chr3	19282442	C-T	HOMO	INTERGENIC
SBS	Chr3	35542269	T-A	HET	INTERGENIC
SBS	Chr4	24444641	G-A	HET	INTERGENIC
SBS	Chr4	33037971	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g55530
SBS	Chr4	35219069	C-T	HOMO	INTERGENIC
SBS	Chr4	35219076	A-T	HOMO	INTERGENIC
SBS	Chr4	35219077	C-T	HOMO	INTERGENIC
SBS	Chr5	17848937	G-A	HET	INTERGENIC
SBS	Chr5	23760472	G-A	HOMO	INTRON
SBS	Chr6	16164125	C-T	HET	INTRON
SBS	Chr7	22336532	A-T	HOMO	INTRON
SBS	Chr7	26494207	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr7	4513023	A-C	HET	INTRON
SBS	Chr8	17787038	G-T	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2646234	2646235	1	LOC_Os05g05354
Deletion	Chr8	8497625	8497629	4
Deletion	Chr12	9194535	9194558	23	LOC_Os12g16100
Deletion	Chr8	9456138	9456139	1
Deletion	Chr10	10067467	10067472	5
Deletion	Chr12	10602216	10602217	1
Deletion	Chr10	11067001	11132000	64999	7
Deletion	Chr11	12113202	12113205	3
Deletion	Chr11	14281294	14281295	1
Deletion	Chr8	14735495	14735505	10
Deletion	Chr12	15479564	15479595	31
Deletion	Chr6	16378114	16378120	6
Deletion	Chr2	16826013	16826018	5
Deletion	Chr12	17190586	17190587	1
Deletion	Chr12	18233857	18233858	1
Deletion	Chr9	18623572	18623573	1
Deletion	Chr10	19553001	19579000	25999	3
Deletion	Chr5	21819200	21819211	11
Deletion	Chr6	24473281	24473286	5
Deletion	Chr12	25137936	25137937	1
Deletion	Chr6	25334415	25334416	1
Deletion	Chr12	27369172	27369173	1
Deletion	Chr3	27574144	27574145	1
Deletion	Chr5	28360014	28360019	5
Deletion	Chr2	28701737	28701753	16
Deletion	Chr4	31706754	31706757	3
Deletion	Chr2	34129325	34129332	7
Deletion	Chr1	35168001	35281000	112999	16
Deletion	Chr1	36911402	36911403	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	5132357	5132358	2
Insertion	Chr11	8574326	8574327	2
Insertion	Chr12	11627775	11627775	1
Insertion	Chr12	23655329	23655329	1
Insertion	Chr12	7075554	7075554	1
Insertion	Chr3	12760119	12760119	1
Insertion	Chr4	10997482	10997482	1
Insertion	Chr5	4005290	4005293	4
Insertion	Chr6	7390721	7390721	1	LOC_Os06g13430
Insertion	Chr7	17075242	17075242	1
Insertion	Chr7	20854229	20854229	1
Insertion	Chr8	11235992	11235992	1
Insertion	Chr8	12820254	12820254	1
Insertion	Chr8	6990611	6990611	1	LOC_Os08g11920
Insertion	Chr9	21429693	21429693	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	34684085	35165282

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	2846545	Chr1	5089752
Translocation	Chr12	2846555	Chr8	6395195
Translocation	Chr4	2988805	Chr1	29749623
Translocation	Chr7	5440087	Chr6	7372783
Translocation	Chr12	7151544	Chr7	5718372
Translocation	Chr8	12007575	Chr3	25764424
Translocation	Chr11	15949080	Chr7	18864237
Translocation	Chr11	16997641	Chr2	474781
Translocation	Chr5	19880114	Chr4	13327661
Translocation	Chr11	23449558	Chr8	16435221
Translocation	Chr11	25273903	Chr7	5261743
Translocation	Chr11	29010110	Chr3	31102190

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