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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19119092	C-T	HET	INTRON
SBS	Chr1	21235000	G-A	HOMO	INTERGENIC
SBS	Chr1	24854656	G-A	HET	INTERGENIC
SBS	Chr2	14558900	T-C	HET	UTR_3_PRIME
SBS	Chr2	28521984	G-A	HET	INTERGENIC
SBS	Chr3	13144606	G-A	HET	INTERGENIC
SBS	Chr3	31794543	C-T	HOMO	INTRON
SBS	Chr4	17564056	G-A	HET	INTERGENIC
SBS	Chr5	7213239	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g12570
SBS	Chr5	17599197	T-A	HOMO	INTRON
SBS	Chr5	17599198	G-T	HOMO	INTRON
SBS	Chr5	24707040	T-C	HET	INTERGENIC
SBS	Chr6	3015851	A-T	HET	INTERGENIC
SBS	Chr6	7946936	T-A	HET	INTRON
SBS	Chr6	19578803	C-T	HET	INTERGENIC
SBS	Chr7	28706966	T-A	HOMO	INTERGENIC
SBS	Chr8	15591285	C-A	HET	INTERGENIC
SBS	Chr8	19087666	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30910
SBS	Chr8	21686149	C-A	HET	INTERGENIC
SBS	Chr9	3259814	G-A	HET	INTERGENIC
SBS	Chr9	17998327	A-T	HET	INTERGENIC
SBS	Chr10	745064	G-A	HET	INTERGENIC
SBS	Chr10	2726479	A-T	HET	INTERGENIC
SBS	Chr10	2907559	G-A	HET	INTRON
SBS	Chr10	8312645	C-A	HET	INTERGENIC
SBS	Chr10	8721937	T-C	HET	INTERGENIC
SBS	Chr10	13481766	C-T	HET	INTERGENIC
SBS	Chr10	22180982	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	6428680	A-T	HET	INTERGENIC
SBS	Chr11	8565160	C-T	HET	INTERGENIC
SBS	Chr11	19184207	G-C	HET	UTR_3_PRIME
SBS	Chr12	5690982	T-A	HOMO	INTERGENIC
SBS	Chr12	11613192	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g19930

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2407838	2407844	6
Deletion	Chr2	3054001	3062000	7999	2
Deletion	Chr12	3207102	3207103	1
Deletion	Chr6	3345256	3345262	6
Deletion	Chr10	5931523	5931526	3
Deletion	Chr7	7129582	7129584	2
Deletion	Chr11	7525201	7525239	38
Deletion	Chr2	9139118	9139124	6	LOC_Os02g16060
Deletion	Chr10	11178806	11178816	10
Deletion	Chr8	12553001	12576000	22999	4
Deletion	Chr8	12579001	12645000	65999	8
Deletion	Chr7	12633419	12633420	1
Deletion	Chr8	12700689	12700690	1	LOC_Os08g21280
Deletion	Chr2	13871695	13871696	1
Deletion	Chr8	15721001	15779000	57999	9
Deletion	Chr8	15785001	15848000	62999	10
Deletion	Chr12	16012200	16012244	44
Deletion	Chr9	16649893	16649904	11
Deletion	Chr8	16782711	16782712	1
Deletion	Chr4	17957444	17957445	1
Deletion	Chr8	19093433	19093434	1
Deletion	Chr8	19194749	19194755	6
Deletion	Chr12	20209674	20209685	11
Deletion	Chr12	20878415	20878428	13
Deletion	Chr12	20940032	20940033	1
Deletion	Chr2	23498106	23498114	8
Deletion	Chr7	24421928	24421941	13
Deletion	Chr12	26413455	26413458	3
Deletion	Chr2	35343442	35343447	5
Deletion	Chr3	35583898	35583905	7

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	24282882	24282883	2
Insertion	Chr1	18410398	18410398	1
Insertion	Chr1	22388032	22388049	18
Insertion	Chr2	34738868	34738879	12
Insertion	Chr6	1338433	1338454	22
Insertion	Chr8	16637174	16637193	20
Insertion	Chr8	20285311	20285326	16
Insertion	Chr9	18313692	18313697	6
Insertion	Chr11	21680991	21681028	38

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17965141	17965414	LOC_Os01g32750

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2265803	Chr2	3963114
Translocation	Chr9	2266140	Chr2	3963117
Translocation	Chr8	16262939	Chr7	12110042	LOC_Os07g20930
Translocation	Chr8	19194684	Chr7	9565481	LOC_Os07g16364
Translocation	Chr7	23450743	Chr1	35181308
Translocation	Chr7	23450749	Chr1	35182412

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