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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41106524	G-A	HET	INTERGENIC
SBS	Chr10	15804469	C-T	HET	INTERGENIC
SBS	Chr10	15804470	C-T	HET	INTERGENIC
SBS	Chr10	16020973	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g30750
SBS	Chr10	16020974	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g30750
SBS	Chr10	4198383	C-G	HET	INTERGENIC
SBS	Chr11	9857555	A-G	HET	INTERGENIC
SBS	Chr2	26103768	T-A	HOMO	INTERGENIC
SBS	Chr3	30785315	T-A	HET	INTERGENIC
SBS	Chr3	31800664	A-G	HET	INTERGENIC
SBS	Chr3	33038089	C-T	HET	UTR_3_PRIME
SBS	Chr3	34586365	G-T	HET	INTERGENIC
SBS	Chr4	20162424	C-T	HOMO	INTERGENIC
SBS	Chr4	25345431	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g42820
SBS	Chr4	25919625	T-A	HET	INTERGENIC
SBS	Chr4	2654663	G-A	HET	INTERGENIC
SBS	Chr4	29372487	A-G	HET	INTERGENIC
SBS	Chr4	34604070	A-T	HET	INTRON
SBS	Chr5	17899782	A-G	HOMO	INTERGENIC
SBS	Chr5	5600933	T-A	HET	INTERGENIC
SBS	Chr5	7611148	G-A	HET	INTERGENIC
SBS	Chr6	3468251	C-T	HET	INTERGENIC
SBS	Chr6	6959951	C-T	HOMO	INTERGENIC
SBS	Chr6	7075672	A-G	HOMO	INTERGENIC
SBS	Chr7	14088476	C-T	HET	INTERGENIC
SBS	Chr7	15450152	T-A	HET	INTRON
SBS	Chr7	20396762	G-A	HET	INTERGENIC
SBS	Chr8	18808807	C-T	HET	INTRON
SBS	Chr8	449893	A-T	HOMO	UTR_3_PRIME
SBS	Chr8	6304858	C-A	HET	INTERGENIC
SBS	Chr8	9191549	C-T	HET	INTERGENIC
SBS	Chr9	21652881	T-G	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	314092	314094	2
Deletion	Chr11	1147053	1147055	2
Deletion	Chr5	5071078	5071079	1	LOC_Os05g09110
Deletion	Chr7	7459481	7459497	16
Deletion	Chr3	7465614	7465622	8
Deletion	Chr10	7667802	7667828	26
Deletion	Chr11	8069795	8069796	1
Deletion	Chr5	8551300	8551320	20
Deletion	Chr2	9161620	9161621	1
Deletion	Chr4	11233766	11233768	2
Deletion	Chr11	11461064	11461065	1
Deletion	Chr11	12161722	12161725	3
Deletion	Chr7	13475180	13475183	3
Deletion	Chr1	13972882	13972883	1
Deletion	Chr6	14097797	14097800	3
Deletion	Chr1	14624001	14677000	52999	3
Deletion	Chr8	15740446	15740448	2
Deletion	Chr7	17106340	17106341	1
Deletion	Chr11	19542001	19552000	9999	LOC_Os11g33070
Deletion	Chr11	19554001	19571000	16999	2
Deletion	Chr7	21452040	21452042	2
Deletion	Chr3	21534014	21534015	1
Deletion	Chr12	24096243	24096250	7
Deletion	Chr6	26052825	26052827	2	LOC_Os06g43340
Deletion	Chr7	28371001	28389000	17999	3
Deletion	Chr3	29966319	29966320	1
Deletion	Chr2	32366699	32366705	6

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	12668293	12668293	1
Insertion	Chr11	25271686	25271686	1
Insertion	Chr2	31844652	31844652	1
Insertion	Chr3	22147578	22147579	2
Insertion	Chr4	22702973	22702973	1
Insertion	Chr6	19599	19599	1
Insertion	Chr6	22678779	22678780	2
Insertion	Chr7	15413854	15413854	1
Insertion	Chr7	8458416	8458416	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	26071640	26072003

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	687595	Chr7	11905023
Translocation	Chr10	1703886	Chr3	15891627	LOC_Os03g27730
Translocation	Chr10	1703892	Chr3	15892797
Translocation	Chr8	2233762	Chr5	28810789
Translocation	Chr12	2973692	Chr11	2085432	LOC_Os12g06250
Translocation	Chr7	3512181	Chr1	3439728
Translocation	Chr3	3604333	Chr2	16646840
Translocation	Chr9	6397177	Chr8	17892527
Translocation	Chr7	6594584	Chr4	18466064
Translocation	Chr12	8592419	Chr2	15293061	LOC_Os02g26050
Translocation	Chr8	15901663	Chr1	16530859
Translocation	Chr7	17261705	Chr4	8718617
Translocation	Chr9	21492923	Chr5	706733	LOC_Os09g37230
Translocation	Chr6	22658350	Chr1	300013

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